EMLSAG00000004202, EMLSAG00000004202-686968 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004202 vs. C. finmarchicus
Match: gi|592782680|gb|GAXK01171888.1| (TSA: Calanus finmarchicus comp63654_c2_seq1 transcribed RNA sequence) HSP 1 Score: 110.153 bits (274), Expect = 1.113e-26 Identity = 56/155 (36.13%), Postives = 89/155 (57.42%), Query Frame = 0 Query: 158 QKDQHGILDTFSLSFAGNFDFSRSYEGLKKILQGLS----EFIDLKLIHSGVNLAFDTMAEDPSENSVYSRIGEPSPEDEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKKTMDVFVSASNNETDCRTFLCS 308 ++ + +L+T +LS+AGN DFSR+ + K I L+ +DLKL+H+ V++A D + E R E E E L+ GITTV+GA + +Q+CW KTAC G+Y+ +L K+ + IV ++ P W T+D ++ E +C + CS Sbjct: 199 EEKETSLLETLNLSYAGNMDFSRALDQAKNIGSSLATAVGSIVDLKLVHNFVSVALDKLGEADRRG----RSEEKMREQEELKSGITTVVGAALGEQQCWEKTACKAGEYAASLPGKDVIFIVLDRLVPASWIGTLDSVKESATYEQNCNRYECS 651
BLAST of EMLSAG00000004202 vs. C. finmarchicus
Match: gi|592885166|gb|GAXK01073209.1| (TSA: Calanus finmarchicus comp148187_c0_seq1 transcribed RNA sequence) HSP 1 Score: 54.6842 bits (130), Expect = 1.040e-7 Identity = 34/117 (29.06%), Postives = 57/117 (48.72%), Query Frame = 0 Query: 194 EFIDLKLIHSGVNLAFDTMAEDPSENSVYSRIGEPSPEDEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKK---TMDVFVSASNNETDCRTFLC 307 +F+D+ LI + V+LAFD + S +R E+E +R IT + ++ KQEC + C +GD +K K ++ + P W K +DV + S ++DC + C Sbjct: 421 DFVDVALIRACVDLAFDGLTS-QVRLSPLARSDVLPKENEEMRNFITYGLSGMVGKQECLNRALCQLGDLIAEVKGKSIAFMLLEGTIPASWTKLRAAIDVVEAGSEVDSDCSVYEC 768
BLAST of EMLSAG00000004202 vs. C. finmarchicus
Match: gi|592779370|gb|GAXK01175198.1| (TSA: Calanus finmarchicus comp2923_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 2.241e-2 Identity = 29/107 (27.10%), Postives = 50/107 (46.73%), Query Frame = 0 Query: 200 LIHSGVNLAFDTMAEDPSENSVYSR----IGEPSPEDEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKKTMDVFVSASNNETDC 302 LI +G+ L F PS SV R +G+ SP ++ R + + A++ +EC + AC +G + I + L ++ P ++ K M+ F N+ DC Sbjct: 393 LIIAGLALLF------PSVTSVAVRKRRDVGDESPMSNMVER-VQDMYMAVLQSEECLERVACEVGGLAEDAGISKSLTKASESFIPKKYSKMMNKF----NHGKDC 680
BLAST of EMLSAG00000004202 vs. C. finmarchicus
Match: gi|592788992|gb|GAXK01165576.1| (TSA: Calanus finmarchicus comp144_c43_seq16 transcribed RNA sequence) HSP 1 Score: 34.6538 bits (78), Expect = 1.429e-1 Identity = 14/39 (35.90%), Postives = 24/39 (61.54%), Query Frame = 0 Query: 46 SNTFTKFIHIIGGVVPLRGIASVAADIGIPGALTLQHYL 84 S+ + + + G +PLRG+A VA +G+PG+ L+ L Sbjct: 189 SSWLGRCLRLTGNYLPLRGVAGVATGLGVPGSYWLKDTL 305
BLAST of EMLSAG00000004202 vs. C. finmarchicus
Match: gi|592788857|gb|GAXK01165711.1| (TSA: Calanus finmarchicus comp144_c117_seq28 transcribed RNA sequence) HSP 1 Score: 34.6538 bits (78), Expect = 3.301e-1 Identity = 14/39 (35.90%), Postives = 24/39 (61.54%), Query Frame = 0 Query: 46 SNTFTKFIHIIGGVVPLRGIASVAADIGIPGALTLQHYL 84 S+ + + + G +PLRG+A VA +G+PG+ L+ L Sbjct: 228 SSWLGRCLRLTGNYLPLRGVAGVATGLGVPGSYWLKDTL 344
BLAST of EMLSAG00000004202 vs. L. salmonis peptides
Match: EMLSAP00000004202 (pep:novel supercontig:LSalAtl2s:LSalAtl2s221:567304:569227:-1 gene:EMLSAG00000004202 transcript:EMLSAT00000004202 description:"maker-LSalAtl2s221-augustus-gene-5.22") HSP 1 Score: 644.81 bits (1662), Expect = 0.000e+0 Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0 Query: 1 MVITYRVVLLFLLLKSTFGGRLLSETESTSLQERPSFVSKFVGSISNTFTKFIHIIGGVVPLRGIASVAADIGIPGALTLQHYLTPSKAMTRSDGSTTTDSIKRQYIQAKKTLTTALLGVLGMLRMQLFLGILFIFAQVSSSFQYRNGHHPIYYGHVQKDQHGILDTFSLSFAGNFDFSRSYEGLKKILQGLSEFIDLKLIHSGVNLAFDTMAEDPSENSVYSRIGEPSPEDEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKKTMDVFVSASNNETDCRTFLCSPKDRE 313 MVITYRVVLLFLLLKSTFGGRLLSETESTSLQERPSFVSKFVGSISNTFTKFIHIIGGVVPLRGIASVAADIGIPGALTLQHYLTPSKAMTRSDGSTTTDSIKRQYIQAKKTLTTALLGVLGMLRMQLFLGILFIFAQVSSSFQYRNGHHPIYYGHVQKDQHGILDTFSLSFAGNFDFSRSYEGLKKILQGLSEFIDLKLIHSGVNLAFDTMAEDPSENSVYSRIGEPSPEDEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKKTMDVFVSASNNETDCRTFLCSPKDRE Sbjct: 1 MVITYRVVLLFLLLKSTFGGRLLSETESTSLQERPSFVSKFVGSISNTFTKFIHIIGGVVPLRGIASVAADIGIPGALTLQHYLTPSKAMTRSDGSTTTDSIKRQYIQAKKTLTTALLGVLGMLRMQLFLGILFIFAQVSSSFQYRNGHHPIYYGHVQKDQHGILDTFSLSFAGNFDFSRSYEGLKKILQGLSEFIDLKLIHSGVNLAFDTMAEDPSENSVYSRIGEPSPEDEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKKTMDVFVSASNNETDCRTFLCSPKDRE 313
BLAST of EMLSAG00000004202 vs. Select Arthropod Genomes
Match: EFX69117.1 (hypothetical protein DAPPUDRAFT_329459 [Daphnia pulex]) HSP 1 Score: 50.447 bits (119), Expect = 6.125e-7 Identity = 26/83 (31.33%), Postives = 44/83 (53.01%), Query Frame = 0 Query: 232 DEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKKTMDVFVSASNNETDC-RTFLCSPKDRE 313 D V ++TV+GA + Q+C +AC G+Y + KE +++V + P W+ T+ F A+ + DC + F CS +E Sbjct: 54 DYVTPEVMSTVVGAALGDQDCLRYSACKAGNYVADVTGKEIVLMVLDRWVPNSWQGTLRAFKEAATYKDDCKKQFPCSNPQQE 136
BLAST of EMLSAG00000004202 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold895_size84271-snap-gene-0.34 (protein:Tk08202 transcript:maker-scaffold895_size84271-snap-gene-0.34-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_329459") HSP 1 Score: 127.487 bits (319), Expect = 1.210e-35 Identity = 66/165 (40.00%), Postives = 101/165 (61.21%), Query Frame = 0 Query: 164 ILDTFSLSFAGNFDFSRSYEGLKKILQGLSEFIDLKLIHSGVNLAFDTMAEDPS-----ENSVYSRIG----------EPSPEDEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKKTMDVFVSASNNETDCRTFLCSPKDRE 313 +LDTFSLSFAGNF+F+ + EGL KI++G+S FIDL +I + V++ D S N ++ I E + E L++ ITTV+GA+++KQEC+ +TAC+IG + + K+ + I+A+KI P WK T+D+ + S + DC F CSP+ +E Sbjct: 56 LLDTFSLSFAGNFNFANTMEGLSKIMEGISSFIDLSIIRATVDVLMDKFLPSGSGELDFSNDIHGPIPRRDMNVEEFIEKNRRQEDLKQEITTVVGAVLDKQECYQRTACMIGRKASSFAAKDVMFIMAEKIV-PSWKYTLDLIKNGSQDALDCAAFTCSPESKE 219 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004202 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004202 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 5
BLAST of EMLSAG00000004202 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000004202 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004202 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 1
BLAST of EMLSAG00000004202 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000004202 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s221:567304..569227- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004202-686968 ID=EMLSAG00000004202-686968|Name=EMLSAG00000004202|organism=Lepeophtheirus salmonis|type=gene|length=1924bp|location=Sequence derived from alignment at LSalAtl2s221:567304..569227- (Lepeophtheirus salmonis)back to top Add to Basket
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