EMLSAG00000004269, EMLSAG00000004269-687035 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004269 vs. C. finmarchicus
Match: gi|592802545|gb|GAXK01152023.1| (TSA: Calanus finmarchicus comp927091_c0_seq1 transcribed RNA sequence) HSP 1 Score: 71.2478 bits (173), Expect = 6.671e-15 Identity = 47/128 (36.72%), Postives = 74/128 (57.81%), Query Frame = 0 Query: 14 GLMKIFLLCLSIINVCLARAGF--HLVPYIETVDARWLAYVTSGGYXXXXXXXXXXMIFSNEMSMSADILFSLVGTALYLATGTMAXMAYDD--TEDDYRRNEGMAFGGMCIVTGIIYFIHLVLLLKK 137 GL KIF L L +I LAR G+ + + +VD WL Y+T GG+++I +++ ++ + MS D LFS+VG LY+A+G+ A + Y+ T R+ G+A G CI+TGI+ + L+ K Sbjct: 87 GLFKIFELVLIVITFLLARIGYGGNHALFGTSVDEIWLGYLTVGGWLIITPAIIVGIVLEDPMSWKLDSLFSIVGAFLYIASGSCA-IDYNTSLTLAKESRDSGLALGSFCIITGIVLLMDAAFLVTK 467
BLAST of EMLSAG00000004269 vs. C. finmarchicus
Match: gi|592864015|gb|GAXK01093547.1| (TSA: Calanus finmarchicus comp3269073_c0_seq1 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 4.764e-4 Identity = 22/59 (37.29%), Postives = 35/59 (59.32%), Query Frame = 0 Query: 1 MAFVYCGFLKEPTGLMKIFLLCLSIINVCLARAGF--HLVPYIETVDARWLAYVTSGGY 57 MA + G L +G++KI L L+I LAR GF + P+ +++ WL Y+T+GG+ Sbjct: 44 MALHFKGLLTT-SGMLKILELILAITTFVLARVGFDGYTAPFGYSLNHTWLGYLTTGGW 217
BLAST of EMLSAG00000004269 vs. C. finmarchicus
Match: gi|592759298|gb|GAXK01195115.1| (TSA: Calanus finmarchicus comp88665_c0_seq1 transcribed RNA sequence) HSP 1 Score: 40.4318 bits (93), Expect = 6.259e-4 Identity = 22/65 (33.85%), Postives = 36/65 (55.38%), Query Frame = 0 Query: 81 LFSLVGTALYLATGTMAXMAYDD------------TEDDYRRN--EGMAFGGMCIVTGIIYFIHL 131 +++L+G +++ +G+MA + + D TE +Y RN MA G MCI+ G+IY I L Sbjct: 337 IWNLLGAFMFMGSGSMAIITWKDEQALKTSSSTSLTEMEYHRNISSAMAMGAMCIIIGLIYLIDL 531
BLAST of EMLSAG00000004269 vs. C. finmarchicus
Match: gi|592768702|gb|GAXK01185866.1| (TSA: Calanus finmarchicus comp44758_c1_seq6 transcribed RNA sequence) HSP 1 Score: 37.3502 bits (85), Expect = 7.756e-3 Identity = 21/63 (33.33%), Postives = 37/63 (58.73%), Query Frame = 0 Query: 79 DILFSLVGTALYLATGTMAXMAYDDTED-DYR-RNEGMAFGGMCIVTGIIYFIHLVLLLKKLR 139 ++L +LVG L L G++A + D +YR EG+A G + I+ GI++ I +L L+ ++ Sbjct: 459 EVLINLVGAILLLTAGSLAISYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLSLRHMK 647
BLAST of EMLSAG00000004269 vs. C. finmarchicus
Match: gi|592768703|gb|GAXK01185865.1| (TSA: Calanus finmarchicus comp44758_c1_seq5 transcribed RNA sequence) HSP 1 Score: 37.3502 bits (85), Expect = 7.798e-3 Identity = 21/63 (33.33%), Postives = 37/63 (58.73%), Query Frame = 0 Query: 79 DILFSLVGTALYLATGTMAXMAYDDTED-DYR-RNEGMAFGGMCIVTGIIYFIHLVLLLKKLR 139 ++L +LVG L L G++A + D +YR EG+A G + I+ GI++ I +L L+ ++ Sbjct: 459 EVLINLVGAILLLTAGSLAISYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLSLRHMK 647
BLAST of EMLSAG00000004269 vs. C. finmarchicus
Match: gi|592768704|gb|GAXK01185864.1| (TSA: Calanus finmarchicus comp44758_c1_seq4 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 1.128e-2 Identity = 21/63 (33.33%), Postives = 37/63 (58.73%), Query Frame = 0 Query: 79 DILFSLVGTALYLATGTMAXMAYDDTED-DYR-RNEGMAFGGMCIVTGIIYFIHLVLLLKKLR 139 ++L +LVG L L G++A + D +YR EG+A G + I+ GI++ I +L L+ ++ Sbjct: 598 EVLINLVGAILLLTAGSLAISYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLSLRHMK 786
BLAST of EMLSAG00000004269 vs. C. finmarchicus
Match: gi|592768705|gb|GAXK01185863.1| (TSA: Calanus finmarchicus comp44758_c1_seq3 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 1.132e-2 Identity = 21/63 (33.33%), Postives = 37/63 (58.73%), Query Frame = 0 Query: 79 DILFSLVGTALYLATGTMAXMAYDDTED-DYR-RNEGMAFGGMCIVTGIIYFIHLVLLLKKLR 139 ++L +LVG L L G++A + D +YR EG+A G + I+ GI++ I +L L+ ++ Sbjct: 598 EVLINLVGAILLLTAGSLAISYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLSLRHMK 786
BLAST of EMLSAG00000004269 vs. C. finmarchicus
Match: gi|592768706|gb|GAXK01185862.1| (TSA: Calanus finmarchicus comp44758_c1_seq2 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 1.381e-2 Identity = 21/63 (33.33%), Postives = 37/63 (58.73%), Query Frame = 0 Query: 79 DILFSLVGTALYLATGTMAXMAYDDTED-DYR-RNEGMAFGGMCIVTGIIYFIHLVLLLKKLR 139 ++L +LVG L L G++A + D +YR EG+A G + I+ GI++ I +L L+ ++ Sbjct: 635 EVLINLVGAILLLTAGSLAISYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLSLRHMK 823
BLAST of EMLSAG00000004269 vs. C. finmarchicus
Match: gi|592768707|gb|GAXK01185861.1| (TSA: Calanus finmarchicus comp44758_c1_seq1 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 1.386e-2 Identity = 21/63 (33.33%), Postives = 37/63 (58.73%), Query Frame = 0 Query: 79 DILFSLVGTALYLATGTMAXMAYDDTED-DYR-RNEGMAFGGMCIVTGIIYFIHLVLLLKKLR 139 ++L +LVG L L G++A + D +YR EG+A G + I+ GI++ I +L L+ ++ Sbjct: 635 EVLINLVGAILLLTAGSLAISYHSPRYDRNYRDSQEGLALGVIAIIAGIVFAIDFLLSLRHMK 823
BLAST of EMLSAG00000004269 vs. C. finmarchicus
Match: gi|592764203|gb|GAXK01190365.1| (TSA: Calanus finmarchicus comp1492330_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 1.905e-1 Identity = 13/35 (37.14%), Postives = 20/35 (57.14%), Query Frame = 0 Query: 14 GLMKIFLLCLSIINVCLARAGFHLVPYIETVDARW 48 G++ +F +C+SI++ CL VP I V RW Sbjct: 39 GVISVFFICVSILSFCLKTHPDMRVPVIRNVTVRW 143
BLAST of EMLSAG00000004269 vs. L. salmonis peptides
Match: EMLSAP00000004269 (pep:novel supercontig:LSalAtl2s:LSalAtl2s224:170363:172901:1 gene:EMLSAG00000004269 transcript:EMLSAT00000004269 description:"maker-LSalAtl2s224-snap-gene-2.14") HSP 1 Score: 291.582 bits (745), Expect = 5.733e-102 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 Query: 1 MAFVYCGFLKEPTGLMKIFLLCLSIINVCLARAGFHLVPYIETVDARWLAYVTSGGYVLILSVLVLSMIFSNEMSMSADILFSLVGTALYLATGTMAXMAYDDTEDDYRRNEGMAFGGMCIVTGIIYFIHLVLLLKKLRSNKSTI 145 MAFVYCGFLKEPTGLMKIFLLCLSIINVCLARAGFHLVPYIETVDARWLAYVTSGGYVLILSVLVLSMIFSNEMSMSADILFSLVGTALYLATGTMAXMAYDDTEDDYRRNEGMAFGGMCIVTGIIYFIHLVLLLKKLRSNKSTI Sbjct: 1 MAFVYCGFLKEPTGLMKIFLLCLSIINVCLARAGFHLVPYIETVDARWLAYVTSGGYVLILSVLVLSMIFSNEMSMSADILFSLVGTALYLATGTMAXMAYDDTEDDYRRNEGMAFGGMCIVTGIIYFIHLVLLLKKLRSNKSTI 145
BLAST of EMLSAG00000004269 vs. L. salmonis peptides
Match: EMLSAP00000008414 (pep:novel supercontig:LSalAtl2s:LSalAtl2s514:285134:288837:-1 gene:EMLSAG00000008414 transcript:EMLSAT00000008414 description:"maker-LSalAtl2s514-augustus-gene-2.23") HSP 1 Score: 54.6842 bits (130), Expect = 1.724e-9 Identity = 32/131 (24.43%), Postives = 68/131 (51.91%), Query Frame = 0 Query: 9 LKEPTGLMKIFLLCLSIINVCLARAGFHLVPYIETVDARWLAYVTSGGYVLILSVLVLSMIFSNEMSMSADILFSLVGTALYLATGTMAXMAYDDTEDDYRRNEGMAFGGMCIVTGIIYFIHLVLLLKKLR 139 L+ P+G +K+ + L I + L R F + D +++ T GY +I+ ++L+ + + MS+ ++ +L+G+ L++ G + Y + N+G+A G +CIV+G ++ I + ++ R Sbjct: 709 LRTPSGFLKLLEIILVFIILILVRFVFEHEYIFGSTDMKFIGIGTIVGYSIIVPCVLLTYMLGSNMSI-LELFINLIGSILFIVIGAIVIQTYSGCRRRGQCNDGLALGSLCIVSGXLFLIDFLFAIRSTR 838
BLAST of EMLSAG00000004269 vs. nr
Match: gi|936680121|ref|XP_014234970.1| (PREDICTED: uncharacterized protein LOC106657804 [Trichogramma pretiosum]) HSP 1 Score: 54.6842 bits (130), Expect = 6.772e-7 Identity = 39/123 (31.71%), Postives = 64/123 (52.03%), Query Frame = 0 Query: 15 LMKIFLLCLSIINVCLARAGFHLVPYIETVDARWLAYVTSGGYVLILSVLVLSMIFSNEMSMSADILFSLVGTALYLATGTMAXMAYDDTEDDYRRNE-GMAFGGMCIVTGIIYFIHLVLLLK 136 L+++ L+C+ I G H YI T++ L T GY++IL L + ++ D+ FSLVG AL++A+G++ + DY RN+ A G + I+ GII+FI +L + Sbjct: 12 LLELILVCVLI--------GLHYHSYIGTLNDAMLVTGTFCGYLIILVGLFAGAVMGTPVNRRVDLFFSLVGCALFIASGSLII------DHDYARNDKSTAKGSIAIIEGIIFFIDAILTFR 120
BLAST of EMLSAG00000004269 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold11_size778918-snap-gene-0.14 (protein:Tk03654 transcript:maker-scaffold11_size778918-snap-gene-0.14-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC100871751") HSP 1 Score: 79.337 bits (194), Expect = 5.343e-20 Identity = 46/135 (34.07%), Postives = 75/135 (55.56%), Query Frame = 0 Query: 9 LKEPTGLMKIFLLCLSIINVCLARAGFHL--VPYIETVDARWLAYVTSGGYVLILSVLVLSMIFSNEMSMSADILFSLVGTALYLATGTMAXMAYDDTEDDYRRNEGMAFGGMCIVTGIIYFIHLVLLLKKLRSN 141 +K P+G++K L L+I+ + LAR GF+ Y VD +WL T GGY +I +VL+ + + +I+FS VG+ L++ATG + E + G+A G + I+TGII F+ +LL K +++ Sbjct: 8 IKAPSGMIKFLCLALTIVVIILARIGFNEDETSY-RNVDHKWLTITTFGGYCIIFGAMVLTYFLGSGVPDKMEIVFSFVGSCLFIATGAI------HVEHHEGNDTGLAMGSLSIITGIILFVDCLLLAKAMKAR 135 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004269 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004269 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 12
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BLAST of EMLSAG00000004269 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000004269 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004269 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000004269 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000004269 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s224:170363..172901+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004269-687035 ID=EMLSAG00000004269-687035|Name=EMLSAG00000004269|organism=Lepeophtheirus salmonis|type=gene|length=2539bp|location=Sequence derived from alignment at LSalAtl2s224:170363..172901+ (Lepeophtheirus salmonis)back to top Add to Basket
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