EMLSAT00000004269, EMLSAT00000004269-700116 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000004269
Unique NameEMLSAT00000004269-700116
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
AQ F373 EMLSAG00000004269 female
  1. PreAdult2
 No visible phenotype
no visible phenotype 		16.04.2018 - 09:00
23.05.2018 - 09:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s224supercontigLSalAtl2s224:170363..172901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000004269 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000004269EMLSAG00000004269-687035Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000018529EMLSAE00000018529-727457Lepeophtheirus salmonisexon
EMLSAE00000018530EMLSAE00000018530-727458Lepeophtheirus salmonisexon
EMLSAE00000018531EMLSAE00000018531-727459Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto773783auto773783Lepeophtheirus salmonispolypeptide
EMLSAP00000004269EMLSAP00000004269Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000004269

>EMLSAP00000004269 ID=EMLSAP00000004269|Name=EMLSAP00000004269|organism=Lepeophtheirus salmonis|type=polypeptide|length=145bp
MAFVYCGFLKEPTGLMKIFLLCLSIINVCLARAGFHLVPYIETVDARWLA
YVTSGGYVLILSVLVLSMIFSNEMSMSADILFSLVGTALYLATGTMAXMA
YDDTEDDYRRNEGMAFGGMCIVTGIIYFIHLVLLLKKLRSNKSTI
back to top

mRNA from alignment at LSalAtl2s224:170363..172901+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000004269-700116 ID=EMLSAT00000004269-700116|Name=EMLSAT00000004269|organism=Lepeophtheirus salmonis|type=mRNA|length=2539bp|location=Sequence derived from alignment at LSalAtl2s224:170363..172901+ (Lepeophtheirus salmonis)
AAAAAAATAAAGAAATATTTTATATTCTACTACTACACGCTCTAAGTTTC
AGTCAAGTATTCCGTTTGAGTCAGTTTAGACACGTGAAGCAGTTCCTGAA
CTTTTTTTTGCTAGTTGCGAGTTTGTTTCCTGATCGTTCATCACTTTGTG
CTCCCTTTTTATAATAATCTATTATCCCTAAAAGAAAATGGCTTTTGTTT
ACTGTGGATTCCTTAAAGAGCCTACGGGTCTCATGAAGATTTTCTTACTC
GTAAGTAGAGAACGAATAATAATCTTGTGAAGTGGGCGCTAAGGATCAAT
GGATAATATCTGCAAAAAGTGGGTGTCGCACGCCTGAATGTTATGACTGT
AATAATGAGTTAAGTGAGAGGAAATCTATTCGTAGATTAATGTTAGGACG
GAGTTTGTGATCAGATGGGGTTTTATTTATATACATTTCTTATTTAATGG
GGGTTGCAGAATAATTAATTATTGCCAGTTAGACGGATCCGAGATCTGTA
CATGGTGTAGTAGTAGTGGATATTACGAATATGACGCTTGCAGGTACAGA
GAGGGTGAGTGGAGGYCGCAGMGCTTTGCTGTTGTGTGTCGTAGNTGAGT
TGGACWAAGAGGAGCAGCGGCTTTGCGTATTAATAGTTACAACAAATMTT
ATASCTGCCATTTTTTACTACTACAACTAATAATAAGTAGTATAATATAC
CTCCTCCTCCTTGTGTAATTTGACATGGAACTTTCATAATAAAAATAGCG
TCTATATAAATGCTATGTTGTACGTACGTACGACAAGGGAGGAAGAAAAG
AGAGCGGGAAATATAGGAGAAATGAAACTATGATGATATGCGACCTTGAT
TTTAGCACAGAAATGTTTTTTCACAACTAAAGCATTTGTATTTTAGAGGA
AAAGAGGAACGCTGCGACAGAGGGGGGGGGGGCGTGCAAAAAAAAGAAAA
AAAGATCAAATATTCTTACTATTAGGACTAAAAAATGAGAAAAAATCCTG
ATTTTTCCTACATTTCAGTGCCTCAGCATTATCAACGTATGCCTAGCCCG
TGCTGGATTTCATTTGGTTCCTTACATTGAGACTGTAGATGCTCGATGGC
TCGCTTATGTAACATCTGGTGGATATGTTCTCATTCTCTCAGTCCTTGTT
CTCTCCATGATCTTCTCGAATGAGATGTCCATGAGTGCGGTAAGATTGAA
TGCGCCATCTCTTAAACAACATTTACTATTCTTTTTATTTATTTATTTTC
AGGATATTCTCTTTAGTTTGGTTGGAACTGCCCTTTATCTTGCCACAGGA
ACCATGGCTGMTATGGCCTATGATGATACCGAGGATGATTACCGACGAAA
CGAGGGAATGGCTTTTGGAGGGATGTGCATCGTGACTGGGATCATTTACT
TTATTCATTTAGTACTACTATTAAAGAAATTGAGGAGTAACAAATCAACA
ATCTAAGTCGTCATTTGTTATTAAATCAAATCTTCTACATTGATTATAAT
ATCTTTAAATTGTAATTTTCTCTTTCTGTGTATCAAAAAACCCCTGAAAC
TGTTTCTTTATGAAAGAAAGGGGACCAAAGCCTTATAAATAAACTATCCC
GCCCAAATCATAGCTTTTAATTCAATTTTTCCCCAAATTTAAATTTTAAT
TTATATATCAATATAAATATATATATATATTTCATTATTTAAATGCTTTT
TTTTTCATTATCTTTATTAGAGCCAAAGTTTGGTGTATTTCTGTGTTCAG
CTTATTCAACCCCATTTCGATGGGAGACAAACAATATTTATTCACTTTAT
GGCATTAAGAGATATGTTGATTTTTTTTTAAATTCAAATCTAATAAAAGT
TGCACTGCAATTAGATTGCTTTATTTTACAAATGAAGGCGTTGTAACGCC
CCCCCCCCCCCCTCCCTACCTCTTATTATAAATAAGCTCATCAGCAAACT
CCTTCCCACCCAATAATGTAGTATCCTCTATAATAATATTACCCTCCATT
CTTTTATATATTCATGAAAGTAATTTGGTTTATTATGTGTTACCCCCGGG
CTATTTTTTATATACATTGTAATACGCTTCACTAACTTAAGTATTAGACT
TTATTTTCATGTTATAGATACTATTATGTGGAAGGTCGCCCAAAAAAATA
ATAAACGACAAAAAAATACGCAAAGACATGATCACGCAACTATTGACATT
TCAAAAAAGAATCCGTCTTTAACTCTTATATTCAGTGAGTCATTTATTTT
TCATTAAGGACAAGAAACTTTCTTATGTTGAATAAATATTGTTGTCTATT
TATCATCGAAGGTGTGATAATAATGATTGTTAAAATTTCTGCTAACAAAT
AATGTGCTAAAGTAAACCTTTCGTAGGCAGGATTGTTATCTTGAAGTATT
TGAATATCTAATGTATAACTTTTTAAGGGAGGAAGAGCGATGCATATTAG
TGTTGCCTCAACTCGACCAATTATCCACTCTGCTCAGTTTGAATCGAGTA
GATTTTCAAATTCAAAAAAGCCAGTCACCTTGATTTTAA
back to top
Add to Basket