EMLSAG00000004269, EMLSAG00000004269-687035 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004269 vs. C. finmarchicus
Match: gi|592813651|gb|GAXK01140917.1| (TSA: Calanus finmarchicus comp2629214_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 2.612e-1 Identity = 17/48 (35.42%), Postives = 23/48 (47.92%), Query Frame = 0 Query: 10 KEPTGLMKIFLLCLSIINVCLARAGFHLVPYIETVDARWLAYVTSGGY 57 +EP + KIF C + VC+ R H + V +R L Y GGY Sbjct: 285 EEPPSMPKIFYKCPACC*VCVERRSAH-----QGVSSRILYYQAPGGY 413
BLAST of EMLSAG00000004269 vs. C. finmarchicus
Match: gi|592851590|gb|GAXK01105954.1| (TSA: Calanus finmarchicus comp4839169_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 1.161e+0 Identity = 14/45 (31.11%), Postives = 25/45 (55.56%), Query Frame = 0 Query: 68 MIFSNEMSMSADILFSLVGTALYLATGTMAXMAYDDTEDDYRRNE 112 M+ +N +++ L ++ T LY++TG M MAY + + RR Sbjct: 510 MVLANLAALNTPDLILIINTTLYISTGWMMMMAYFGKQKNMRRER 644
BLAST of EMLSAG00000004269 vs. L. salmonis peptides
Match: EMLSAP00000004269 (pep:novel supercontig:LSalAtl2s:LSalAtl2s224:170363:172901:1 gene:EMLSAG00000004269 transcript:EMLSAT00000004269 description:"maker-LSalAtl2s224-snap-gene-2.14") HSP 1 Score: 291.582 bits (745), Expect = 5.733e-102 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 Query: 1 MAFVYCGFLKEPTGLMKIFLLCLSIINVCLARAGFHLVPYIETVDARWLAYVTSGGYVLILSVLVLSMIFSNEMSMSADILFSLVGTALYLATGTMAXMAYDDTEDDYRRNEGMAFGGMCIVTGIIYFIHLVLLLKKLRSNKSTI 145 MAFVYCGFLKEPTGLMKIFLLCLSIINVCLARAGFHLVPYIETVDARWLAYVTSGGYVLILSVLVLSMIFSNEMSMSADILFSLVGTALYLATGTMAXMAYDDTEDDYRRNEGMAFGGMCIVTGIIYFIHLVLLLKKLRSNKSTI Sbjct: 1 MAFVYCGFLKEPTGLMKIFLLCLSIINVCLARAGFHLVPYIETVDARWLAYVTSGGYVLILSVLVLSMIFSNEMSMSADILFSLVGTALYLATGTMAXMAYDDTEDDYRRNEGMAFGGMCIVTGIIYFIHLVLLLKKLRSNKSTI 145
BLAST of EMLSAG00000004269 vs. L. salmonis peptides
Match: EMLSAP00000008414 (pep:novel supercontig:LSalAtl2s:LSalAtl2s514:285134:288837:-1 gene:EMLSAG00000008414 transcript:EMLSAT00000008414 description:"maker-LSalAtl2s514-augustus-gene-2.23") HSP 1 Score: 54.6842 bits (130), Expect = 1.724e-9 Identity = 32/131 (24.43%), Postives = 68/131 (51.91%), Query Frame = 0 Query: 9 LKEPTGLMKIFLLCLSIINVCLARAGFHLVPYIETVDARWLAYVTSGGYVLILSVLVLSMIFSNEMSMSADILFSLVGTALYLATGTMAXMAYDDTEDDYRRNEGMAFGGMCIVTGIIYFIHLVLLLKKLR 139 L+ P+G +K+ + L I + L R F + D +++ T GY +I+ ++L+ + + MS+ ++ +L+G+ L++ G + Y + N+G+A G +CIV+G ++ I + ++ R Sbjct: 709 LRTPSGFLKLLEIILVFIILILVRFVFEHEYIFGSTDMKFIGIGTIVGYSIIVPCVLLTYMLGSNMSI-LELFINLIGSILFIVIGAIVIQTYSGCRRRGQCNDGLALGSLCIVSGXLFLIDFLFAIRSTR 838
BLAST of EMLSAG00000004269 vs. nr
Match: gi|936680121|ref|XP_014234970.1| (PREDICTED: uncharacterized protein LOC106657804 [Trichogramma pretiosum]) HSP 1 Score: 54.6842 bits (130), Expect = 6.772e-7 Identity = 39/123 (31.71%), Postives = 64/123 (52.03%), Query Frame = 0 Query: 15 LMKIFLLCLSIINVCLARAGFHLVPYIETVDARWLAYVTSGGYVLILSVLVLSMIFSNEMSMSADILFSLVGTALYLATGTMAXMAYDDTEDDYRRNE-GMAFGGMCIVTGIIYFIHLVLLLK 136 L+++ L+C+ I G H YI T++ L T GY++IL L + ++ D+ FSLVG AL++A+G++ + DY RN+ A G + I+ GII+FI +L + Sbjct: 12 LLELILVCVLI--------GLHYHSYIGTLNDAMLVTGTFCGYLIILVGLFAGAVMGTPVNRRVDLFFSLVGCALFIASGSLII------DHDYARNDKSTAKGSIAIIEGIIFFIDAILTFR 120
BLAST of EMLSAG00000004269 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold11_size778918-snap-gene-0.14 (protein:Tk03654 transcript:maker-scaffold11_size778918-snap-gene-0.14-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC100871751") HSP 1 Score: 79.337 bits (194), Expect = 5.343e-20 Identity = 46/135 (34.07%), Postives = 75/135 (55.56%), Query Frame = 0 Query: 9 LKEPTGLMKIFLLCLSIINVCLARAGFHL--VPYIETVDARWLAYVTSGGYVLILSVLVLSMIFSNEMSMSADILFSLVGTALYLATGTMAXMAYDDTEDDYRRNEGMAFGGMCIVTGIIYFIHLVLLLKKLRSN 141 +K P+G++K L L+I+ + LAR GF+ Y VD +WL T GGY +I +VL+ + + +I+FS VG+ L++ATG + E + G+A G + I+TGII F+ +LL K +++ Sbjct: 8 IKAPSGMIKFLCLALTIVVIILARIGFNEDETSY-RNVDHKWLTITTFGGYCIIFGAMVLTYFLGSGVPDKMEIVFSFVGSCLFIATGAI------HVEHHEGNDTGLAMGSLSIITGIILFVDCLLLAKAMKAR 135 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004269 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004269 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 12
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BLAST of EMLSAG00000004269 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000004269 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004269 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000004269 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000004269 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s224:170363..172901+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004269-687035 ID=EMLSAG00000004269-687035|Name=EMLSAG00000004269|organism=Lepeophtheirus salmonis|type=gene|length=2539bp|location=Sequence derived from alignment at LSalAtl2s224:170363..172901+ (Lepeophtheirus salmonis)back to top Add to Basket
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