EMLSAG00000004295, EMLSAG00000004295-687061 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004295
Unique NameEMLSAG00000004295-687061
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000004295 vs. L. salmonis peptides
Match: EMLSAP00000004295 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2258:48464:49380:-1 gene:EMLSAG00000004295 transcript:EMLSAT00000004295 description:"maker-LSalAtl2s2258-augustus-gene-0.1")

HSP 1 Score: 253.447 bits (646), Expect = 2.314e-87
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query:    1 MHNRMDVSQNPGGVSKKESLTEESFSHKPNCSSNSISSPATTGTCVVSLSVSSGSSSXPIMATXTATTTSTKSSTSSTNSSXTTGXTTHAEKKRGPGRPSGSTRQNIDNQRNPGAGNNQSSKGNNHHIKDGSGPP 135
            MHNRMDVSQNPGGVSKKESLTEESFSHKPNCSSNSISSPATTGTCVVSLSVSSGSSSXPIMATXTATTTSTKSSTSSTNSSXTTGXTTHAEKKRGPGRPSGSTRQNIDNQRNPGAGNNQSSKGNNHHIKDGSGPP
Sbjct:    1 MHNRMDVSQNPGGVSKKESLTEESFSHKPNCSSNSISSPATTGTCVVSLSVSSGSSSXPIMATXTATTTSTKSSTSSTNSSXTTGXTTHAEKKRGPGRPSGSTRQNIDNQRNPGAGNNQSSKGNNHHIKDGSGPP 135          
BLAST of EMLSAG00000004295 vs. L. salmonis peptides
Match: EMLSAP00000003750 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2015:18932:23770:1 gene:EMLSAG00000003750 transcript:EMLSAT00000003750 description:"maker-LSalAtl2s2015-snap-gene-0.5")

HSP 1 Score: 150.984 bits (380), Expect = 1.632e-43
Identity = 119/130 (91.54%), Postives = 122/130 (93.85%), Query Frame = 0
Query:    6 DVSQNPGGVSKKESLTEESFSHKPNCSSNSISSPATTGTCVVSLSVSSGSSSXPIMATXTATTTSTKSSTSSTNSSXTTGXTTHAEKKRGPGRPSGSTRQNIDNQRNPGAGNNQSSKGNNHHIKDGSGPP 135
            D +QNPGGV KKESLTEESFSHK N SSNSISSPATTGTCVVSLSVSSGSSS PIM T TATTTSTKS+TSSTNSS TTGXTTHAEKKRGPGRPSGSTRQNIDNQRNPG+GNNQSSKGNNHHIKDGSGPP
Sbjct:  516 DKAQNPGGVPKKESLTEESFSHKHNSSSNSISSPATTGTCVVSLSVSSGSSSTPIMTTTTATTTSTKSNTSSTNSSVTTGXTTHAEKKRGPGRPSGSTRQNIDNQRNPGSGNNQSSKGNNHHIKDGSGPP 645          
BLAST of EMLSAG00000004295 vs. L. salmonis peptides
Match: EMLSAP00000005267 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2819:7389:12032:-1 gene:EMLSAG00000005267 transcript:EMLSAT00000005267 description:"maker-LSalAtl2s2819-snap-gene-0.4")

HSP 1 Score: 150.214 bits (378), Expect = 1.874e-43
Identity = 119/130 (91.54%), Postives = 121/130 (93.08%), Query Frame = 0
Query:    6 DVSQNPGGVSKKESLTEESFSHKPNCSSNSISSPATTGTCVVSLSVSSGSSSXPIMATXTATTTSTKSSTSSTNSSXTTGXTTHAEKKRGPGRPSGSTRQNIDNQRNPGAGNNQSSKGNNHHIKDGSGPP 135
            D +QNPGGV KKESLTEESFSHK N SSNSISSPATTGTCVVSLSVSSGSSSXP MA XTATTTSTKSST STNSS TTG TTHAEKKRGPGRPSGSTRQNIDNQRNPG+GNNQSSKGNNHHIKDGSGPP
Sbjct:  408 DKAQNPGGVPKKESLTEESFSHKHNSSSNSISSPATTGTCVVSLSVSSGSSSXPXMAXXTATTTSTKSSTPSTNSSVTTGTTTHAEKKRGPGRPSGSTRQNIDNQRNPGSGNNQSSKGNNHHIKDGSGPP 537          
BLAST of EMLSAG00000004295 vs. L. salmonis peptides
Match: EMLSAP00000001495 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1256:67687:72293:-1 gene:EMLSAG00000001495 transcript:EMLSAT00000001495 description:"maker-LSalAtl2s1256-augustus-gene-0.21")

HSP 1 Score: 144.821 bits (364), Expect = 9.002e-41
Identity = 119/130 (91.54%), Postives = 121/130 (93.08%), Query Frame = 0
Query:    6 DVSQNPGGVSKKESLTEESFSHKPNCSSNSISSPATTGTCVVSLSVSSGSSSXPIMATXTATTTSTKSSTSSTNSSXTTGXTTHAEKKRGPGRPSGSTRQNIDNQRNPGAGNNQSSKGNNHHIKDGSGPP 135
            D +QNPGGV KKESLTEESFSHK N SSNSISSPATTGTCVVSLSVSSGSSSXPIM   TATTTSTKSSTSSTNSS TTG TTHAEKKRGPGRPSGSTRQNIDNQRNPG+GNNQSSKGNNHHIKDGSGPP
Sbjct:  624 DKAQNPGGVPKKESLTEESFSHKHNSSSNSISSPATTGTCVVSLSVSSGSSSXPIMTXTTATTTSTKSSTSSTNSSVTTGTTTHAEKKRGPGRPSGSTRQNIDNQRNPGSGNNQSSKGNNHHIKDGSGPP 753          
BLAST of EMLSAG00000004295 vs. L. salmonis peptides
Match: EMLSAP00000003450 (pep:novel supercontig:LSalAtl2s:LSalAtl2s188:819370:821796:-1 gene:EMLSAG00000003450 transcript:EMLSAT00000003450 description:"maker-LSalAtl2s188-snap-gene-7.31")

HSP 1 Score: 131.339 bits (329), Expect = 3.467e-38
Identity = 104/130 (80.00%), Postives = 113/130 (86.92%), Query Frame = 0
Query:    6 DVSQNPGGVSKKESLTEESFSHKPNCSSNSISSPATTGTCVVSLSVSSGSSSXPIMATXTATTTSTKSSTSSTNSSXTTGXTTHAEKKRGPGRPSGSTRQNIDNQRNPGAGNNQSSKGNNHHIKDGSGPP 135
            D +QNPGGV KKE  TEESFSHK N SSNSISSPATTGTCVVSLSVSSGSSS PIM T TATT++  S++S+ +S  T   TTHAEKKRGPGRPSGSTRQNIDNQRNPG+GNNQSSKGN+HHIKDGSGPP
Sbjct:   22 DKAQNPGGVPKKEFSTEESFSHKHNSSSNSISSPATTGTCVVSLSVSSGSSSTPIMXTTTATTSTKSSTSSTNSSVTTG-TTTHAEKKRGPGRPSGSTRQNIDNQRNPGSGNNQSSKGNSHHIKDGSGPP 150          
BLAST of EMLSAG00000004295 vs. L. salmonis peptides
Match: EMLSAP00000003449 (pep:novel supercontig:LSalAtl2s:LSalAtl2s188:708922:714137:-1 gene:EMLSAG00000003449 transcript:EMLSAT00000003449 description:"snap_masked-LSalAtl2s188-processed-gene-7.17")

HSP 1 Score: 84.3445 bits (207), Expect = 1.132e-20
Identity = 77/119 (64.71%), Postives = 83/119 (69.75%), Query Frame = 0
Query:   15 SKKESLTEESFSHKPNCSSNSISSPATTGTCVVSLSVSSGSSSXPIMATXTATTTSTKSSTSSTNSSXTTGXTTHAEKKRGPGRPSGSTRQNIDNQRNPGAGNNQSSKGNNHHIKDGSG 133
            S KES  E+SF H  N SSNS +SPATTG  VVSLS SSG S  P        +TS+KSSTSSTNSS TTG T H EKKRGP RPSGSTRQNIDNQR PG+GN +SS       KDGSG
Sbjct:   20 STKESSMEDSFLHHRNSSSNSSNSPATTGAGVVSLSTSSGRSITP----TMTISTSSKSSTSSTNSSATTGSTMHVEKKRGPIRPSGSTRQNIDNQRIPGSGNIKSS-------KDGSG 127          
BLAST of EMLSAG00000004295 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold959_size76551-snap-gene-0.22 (protein:Tk01218 transcript:maker-scaffold959_size76551-snap-gene-0.22-mRNA-1 annotation:"polyhomeotic-like protein 1")

HSP 1 Score: 45.4394 bits (106), Expect = 5.827e-7
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 0
Query:   65 TATTTSTKSSTSSTNSSXTTGXTTHAEKKRGPGRPSGSTRQNIDNQRNPGAGNNQSSKGNNHHIKDGSGPP 135
            T T TS+ +  +S+++   +  T   EKKRGPGRP GSTRQ+I+ QR        + K  NH    G GPP
Sbjct:   62 TPTITSSHNGLTSSHNGKKSDGTPATEKKRGPGRPPGSTRQSIEQQR------LNADKAKNH----GDGPP 122          
BLAST of EMLSAG00000004295 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1856_size26313-snap-gene-0.1 (protein:Tk01980 transcript:maker-scaffold1856_size26313-snap-gene-0.1-mRNA-1 annotation:"polyhomeotic-like protein 1")

HSP 1 Score: 46.2098 bits (108), Expect = 5.874e-7
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 0
Query:   65 TATTTSTKSSTSSTNSSXTTGXTTHAEKKRGPGRPSGSTRQNIDNQRNPGAGNNQSSKGNNHHIKDGSGPP 135
            T T TS+ +  +S+++   +  T   EKKRGPGRP GSTRQ+I+ QR        + K  NH    G GPP
Sbjct:   62 TPTITSSHNGLTSSHNGKKSDGTPATEKKRGPGRPPGSTRQSIEQQR------LNADKAKNH----GDGPP 122          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004295 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004295 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004295 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 6
Match NameE-valueIdentityDescription
EMLSAP000000042952.314e-87100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s2258:4846... [more]
EMLSAP000000037501.632e-4391.54pep:novel supercontig:LSalAtl2s:LSalAtl2s2015:1893... [more]
EMLSAP000000052671.874e-4391.54pep:novel supercontig:LSalAtl2s:LSalAtl2s2819:7389... [more]
EMLSAP000000014959.002e-4191.54pep:novel supercontig:LSalAtl2s:LSalAtl2s1256:6768... [more]
EMLSAP000000034503.467e-3880.00pep:novel supercontig:LSalAtl2s:LSalAtl2s188:81937... [more]
EMLSAP000000034491.132e-2064.71pep:novel supercontig:LSalAtl2s:LSalAtl2s188:70892... [more]
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BLAST of EMLSAG00000004295 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004295 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004295 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004295 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold959_size76551-snap-gene-0.225.827e-742.25protein:Tk01218 transcript:maker-scaffold959_size7... [more]
maker-scaffold1856_size26313-snap-gene-0.15.874e-742.25protein:Tk01980 transcript:maker-scaffold1856_size... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s2258supercontigLSalAtl2s2258:48464..49380 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s2258-augustus-gene-0.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004295 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004295EMLSAT00000004295-700142Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s2258:48464..49380-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004295-687061 ID=EMLSAG00000004295-687061|Name=EMLSAG00000004295|organism=Lepeophtheirus salmonis|type=gene|length=917bp|location=Sequence derived from alignment at LSalAtl2s2258:48464..49380- (Lepeophtheirus salmonis)
ATGCATAATAGGATGGATGTTTGTAATGATGTTGATTGATAGGTTTAATA ATAATTGAAAGTTTCTCAAAAACTGTTTTTCTTTTCCCTTTTCATAACCA TAAGAAGTAACTAGGTGGAGTGATGATGAAAAATGTAATGTACTACACCT CATGTTTGACGGAGATCGAATTAAACCTCTTATTTATTTATTTCTAATAC GAAAAAAGCTCTTCCATTTCGTCATTCCTTCCTCTATAAGTTCATTCTTT TCGTTTCCTTCTTGCCTGCATTAATGAAATTCCTGCTACTAGCTACTATT AAAAGAAGGGACAAAGTATCTTACAAATCTTAGTACAAACACAAACCATT TCCAGATGTTTTCCTTCACAGAAGAAAAAAAAGTTTTTCTCCTAAACAAA TATATGTACATAGATAATGGAAAGAAAGACTGAATAATTTTAACATATTC CTTTTTTTTATATCTTCCAGCTCAAAATCCCGGAGGTGTATCCAAAAAGG AGTCTTTGACGGAAGAGTCCTTCTCCCACAAACCTAATTGTTCTTCAAAC AGTATTAGCTCCCCCGCTACCACTGGCACATGCGTTGTTTCTCTGAGTGT CTCTTCTGGGAGCAGTAGTKCTCCTATAATGGCCACCKCCACCGCCACCA CCACATCTACAAAATCAAGTACTTCCTCGACCAACTCCTCAGNGACTACA GGAKCCACCACGCATGCCGAGAAAAAGCGTGGTCCTGGTCGACCGTCCGG TAGTACGCGTCAAAACATTGATAATCAACGCAACCCTGGTGCTGGGAACA ATCAGAGTAGTAAAGGTATTATGAAACATACTCATTGTATCTTGAATCAT TCTTAATTATGCATTGATTTGTTTTGTAGGAAATAATCACCACATCAAAG ATGGGAGTGGTCCACCC
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