EMLSAG00000004298, EMLSAG00000004298-687064 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004298
Unique NameEMLSAG00000004298-687064
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000004298 vs. C. finmarchicus
Match: gi|592853834|gb|GAXK01103710.1| (TSA: Calanus finmarchicus comp166218_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 4.097e-1
Identity = 30/110 (27.27%), Postives = 50/110 (45.45%), Query Frame = 0 
Query:   54 ESLYDIKLGRVQSSISTTQNTIETLKGLVEIQMSELEALQRSNTQLEAYKLRSYLYSMTNLNWHQKKL-----------KCYSLSSDHNDVKMFSIENTEGALEKEGALI 152
            ES++ +K  RV+ +IST + T+E      EI M         N     YK R + Y   ++++ ++ L           K +S  S H   ++F I N EG  E +G ++
Sbjct:  328 ESIFVMK--RVRLNISTKEVTVEDWPNQREIPMLNTVDFPMINENYVGYKNR-FAYGWVSIDYWRQTLVKKDLENSMNDKTWSRPS-HYPGEVFFIPNPEGEGEDDGVVV 645
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BLAST of EMLSAG00000004298 vs. C. finmarchicus
Match: gi|592924985|gb|GAXK01033430.1| (TSA: Calanus finmarchicus comp82126_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.462e+0
Identity = 18/51 (35.29%), Postives = 29/51 (56.86%), Query Frame = 0 
Query:  116 WHQKKLK----CY-SLSSDHNDVKMFSIENTEGALEKEGALIWKHMSYDPQ 161
            WH +  +    C  +LSS  + V MF +++T GA+    A IW+++S DP 
Sbjct: 3628 WHFRNFRSTLGCPQNLSSISSAVNMFCMKDT-GAIVPRPATIWENLSLDPH 3777
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BLAST of EMLSAG00000004298 vs. C. finmarchicus
Match: gi|592924986|gb|GAXK01033429.1| (TSA: Calanus finmarchicus comp82126_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.514e+0
Identity = 18/51 (35.29%), Postives = 29/51 (56.86%), Query Frame = 0 
Query:  116 WHQKKLK----CY-SLSSDHNDVKMFSIENTEGALEKEGALIWKHMSYDPQ 161
            WH +  +    C  +LSS  + V MF +++T GA+    A IW+++S DP 
Sbjct: 12509 WHFRNFRSTLGCPQNLSSISSAVNMFCMKDT-GAIVPRPATIWENLSLDPH 12658
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BLAST of EMLSAG00000004298 vs. C. finmarchicus
Match: gi|592761397|gb|GAXK01193016.1| (TSA: Calanus finmarchicus comp3358925_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 4.848e+0
Identity = 19/60 (31.67%), Postives = 32/60 (53.33%), Query Frame = 0 
Query:   43 RDNMELNLTEIESLYDIKLGRVQSSISTTQN-------TIETLKGLVEIQMSELEALQRS 95
            RD ++ NL ++E +++IK+   ++SI   Q+         E  K  +E+   ELE LQ S
Sbjct:  575 RDEIKGNLDKLEDIHEIKMSESETSIRRIQDENLLLKRQFEDQKDELELNKKELEKLQES 754
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BLAST of EMLSAG00000004298 vs. L. salmonis peptides
Match: EMLSAP00000004298 (pep:novel supercontig:LSalAtl2s:LSalAtl2s225:241289:242012:-1 gene:EMLSAG00000004298 transcript:EMLSAT00000004298 description:"maker-LSalAtl2s225-augustus-gene-2.25")

HSP 1 Score: 330.872 bits (847), Expect = 7.926e-117
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 
Query:    1 MEGMGMRDLDISSLDSRIQKXIQCKEKKEGILEKLLESQKELRDNMELNLTEIESLYDIKLGRVQSSISTTQNTIETLKGLVEIQMSELEALQRSNTQLEAYKLRSYLYSMTNLNWHQKKLKCYSLSSDHNDVKMFSIENTEGALEKEGALIWKHMSYDPQWDNL 165
            MEGMGMRDLDISSLDSRIQKXIQCKEKKEGILEKLLESQKELRDNMELNLTEIESLYDIKLGRVQSSISTTQNTIETLKGLVEIQMSELEALQRSNTQLEAYKLRSYLYSMTNLNWHQKKLKCYSLSSDHNDVKMFSIENTEGALEKEGALIWKHMSYDPQWDNL
Sbjct:    1 MEGMGMRDLDISSLDSRIQKXIQCKEKKEGILEKLLESQKELRDNMELNLTEIESLYDIKLGRVQSSISTTQNTIETLKGLVEIQMSELEALQRSNTQLEAYKLRSYLYSMTNLNWHQKKLKCYSLSSDHNDVKMFSIENTEGALEKEGALIWKHMSYDPQWDNL 165
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004298 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004298 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592853834|gb|GAXK01103710.1|4.097e-127.27TSA: Calanus finmarchicus comp166218_c1_seq1 trans... [more]
gi|592924985|gb|GAXK01033430.1|1.462e+035.29TSA: Calanus finmarchicus comp82126_c3_seq2 transc... [more]
gi|592924986|gb|GAXK01033429.1|1.514e+035.29TSA: Calanus finmarchicus comp82126_c3_seq1 transc... [more]
gi|592761397|gb|GAXK01193016.1|4.848e+031.67TSA: Calanus finmarchicus comp3358925_c0_seq1 tran... [more]
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BLAST of EMLSAG00000004298 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000042987.926e-117100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s225:24128... [more]
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BLAST of EMLSAG00000004298 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004298 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004298 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004298 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s225supercontigLSalAtl2s225:241289..242012 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s225-augustus-gene-2.25
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004298 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004298EMLSAT00000004298-700145Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s225:241289..242012-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004298-687064 ID=EMLSAG00000004298-687064|Name=EMLSAG00000004298|organism=Lepeophtheirus salmonis|type=gene|length=724bp|location=Sequence derived from alignment at LSalAtl2s225:241289..242012- (Lepeophtheirus salmonis)
ATGGAAGGMATGGGCATGAGAGATTTGGATATCTCAAGCTTAGACTCTCG
GATTCAGAAAWCTATCCAATGTAAGGAGAAAAAGGAAGGGATATTGGAGA
AGCTCCTTGAGTCTCAAAAAGAGCTACGAGACAATATGGAGCTTAATCTA
ACGGAAATTGAGTCCTTGTATGATATAAAATTGGGGCGAGTGCAAAGTAG
TATATCCACTACTCAAGTAATTAACTGACAATGTATTTGAGAGTATTTCT
AGTGGGACTAGATAGACTCTCTTTATTTCTCATTTCATAAATGTCTCTTT
CACTTCTCTACCCTATAGAACACGATAGAGACACTCAAAGGACTTGTTGA
AATTCAAATGTCCGAACTTGAAGCCCTTCAAAGATCCAATACACAGCTAG
AGGTACGAGGAAGCGAATTTCAAAGGATCCTAGAGGAAAAAAAAGGCAGA
AGCCAAATTTATACTTAACCAGAAGAAACAGTCAATTTCATTAATGGATG
AAATGTCTCCTTTTCAAACAATTCAGGCTTATAAACTCCGTTCCTACTTG
TATTCCATGACAAATCTCAACTGGCACCAAAAGAAACTCAAATGCTACTC
ACTTTCCTCTGATCACAATGATGTTAAAATGTTTAGCATTGAAAATACAG
AAGGTGCTTTGGAAAAGGAAGGGGCATTAATTTGGAAACATATGAGCTAC
GATCCGCAATGGGATAACCTATAA
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