EMLSAG00000004347, EMLSAG00000004347-687113 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004347
Unique NameEMLSAG00000004347-687113
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
AR F376 EMLSAT00000004347 EMLSAG00000004347 female
  1. PreAdult2
 shorter eggstring
-Missing- 		16.08.2018 - 09:00
20.09.2018 - 09:00
Homology
[Close]
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Match: gi|592892268|gb|GAXK01066107.1| (TSA: Calanus finmarchicus comp4960_c17_seq26 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 4.767e-4
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 0 
Query:   53 GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVE 85
            G Y+Y+DP GSLVT+ Y+ G  G YTE+R+V E
Sbjct:  163 GSYNYVDPTGSLVTVNYQAGPMG-YTETREVTE 258
[Close]
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Match: gi|592892294|gb|GAXK01066081.1| (TSA: Calanus finmarchicus comp4960_c16_seq29 transcribed RNA sequence)

HSP 1 Score: 42.3578 bits (98), Expect = 6.244e-4
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 0 
Query:   53 GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVE 85
            G Y+Y+DP GSLVT+ Y+ G  G YTE+R+V E
Sbjct:   83 GSYNYVDPTGSLVTVNYQAGPMG-YTETREVTE 178
[Close]
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Match: gi|592892303|gb|GAXK01066072.1| (TSA: Calanus finmarchicus comp4960_c16_seq20 transcribed RNA sequence)

HSP 1 Score: 42.3578 bits (98), Expect = 7.290e-4
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 0 
Query:   53 GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVE 85
            G Y+Y+DP GSLVT+ Y+ G  G YTE+R+V E
Sbjct:  132 GSYNYVDPTGSLVTVNYQAGPMG-YTETREVTE 227
[Close]
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Match: gi|592776164|gb|GAXK01178404.1| (TSA: Calanus finmarchicus comp15136_c2_seq11 transcribed RNA sequence)

HSP 1 Score: 44.669 bits (104), Expect = 8.167e-4
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 0 
Query:   53 GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDY 87
            G YSY+DPLGSL+T+ Y  G  G Y E+R V E++
Sbjct:  249 GSYSYVDPLGSLITVTYTAGPMG-YQETRNVQENF 350
[Close]
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Match: gi|592776168|gb|GAXK01178400.1| (TSA: Calanus finmarchicus comp15136_c2_seq7 transcribed RNA sequence)

HSP 1 Score: 44.669 bits (104), Expect = 8.383e-4
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 0 
Query:   53 GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDY 87
            G YSY+DPLGSL+T+ Y  G  G Y E+R V E++
Sbjct:  249 GSYSYVDPLGSLITVTYTAGPMG-YQETRNVQENF 350
[Close]
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Match: gi|592776165|gb|GAXK01178403.1| (TSA: Calanus finmarchicus comp15136_c2_seq10 transcribed RNA sequence)

HSP 1 Score: 44.669 bits (104), Expect = 8.907e-4
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 0 
Query:   53 GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDY 87
            G YSY+DPLGSL+T+ Y  G  G Y E+R V E++
Sbjct:  249 GSYSYVDPLGSLITVTYTAGPMG-YQETRNVQENF 350
[Close]
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Match: gi|592776169|gb|GAXK01178399.1| (TSA: Calanus finmarchicus comp15136_c2_seq6 transcribed RNA sequence)

HSP 1 Score: 44.669 bits (104), Expect = 9.135e-4
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 0 
Query:   53 GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDY 87
            G YSY+DPLGSL+T+ Y  G  G Y E+R V E++
Sbjct:  249 GSYSYVDPLGSLITVTYTAGPMG-YQETRNVQENF 350
[Close]
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Match: gi|592776167|gb|GAXK01178401.1| (TSA: Calanus finmarchicus comp15136_c2_seq8 transcribed RNA sequence)

HSP 1 Score: 44.2838 bits (103), Expect = 9.461e-4
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 0 
Query:   53 GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDY 87
            G YSY+DPLGSL+T+ Y  G  G Y E+R V E++
Sbjct:  249 GSYSYVDPLGSLITVTYTAGPMG-YQETRNVQENF 350
[Close]
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Match: gi|592776170|gb|GAXK01178398.1| (TSA: Calanus finmarchicus comp15136_c2_seq5 transcribed RNA sequence)

HSP 1 Score: 44.2838 bits (103), Expect = 9.695e-4
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 0 
Query:   53 GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDY 87
            G YSY+DPLGSL+T+ Y  G  G Y E+R V E++
Sbjct:  249 GSYSYVDPLGSLITVTYTAGPMG-YQETRNVQENF 350
[Close]
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Match: gi|592892316|gb|GAXK01066059.1| (TSA: Calanus finmarchicus comp4960_c16_seq7 transcribed RNA sequence)

HSP 1 Score: 43.8986 bits (102), Expect = 9.918e-4
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 0 
Query:   53 GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVE 85
            G Y+Y+DP GSLVT+ Y+ G  G YTE+R+V E
Sbjct:  385 GSYNYVDPTGSLVTVNYQAGPMG-YTETREVQE 480
[Close]
BLAST of EMLSAG00000004347 vs. L. salmonis peptides
Match: EMLSAP00000004347 (pep:novel supercontig:LSalAtl2s:LSalAtl2s229:12106:16104:-1 gene:EMLSAG00000004347 transcript:EMLSAT00000004347 description:"maker-LSalAtl2s229-snap-gene-0.4")

HSP 1 Score: 1368.6 bits (3541), Expect = 0.000e+0
Identity = 703/703 (100.00%), Postives = 703/703 (100.00%), Query Frame = 0 
Query:    1 MKHSNNLIFIMKVFIVLSLILTLSGSSFGRSEPIPTIPKGCVFITNVQTARGGEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDYASGHAGASDINVIVSQVIQEIEIETTKTIELVLRKTNVNAPNFLPSNLVQTIVKKLRPIITTTVRRIISSSGLNLNVNEVVDNVILQIEPAILQGVESAIQGNTSFNSGKNKPGKKPTGNLSGQGENSAILIDQIIAQLRPFIVEIVSKQTKIQCQNHGGSSIGSVSXTGSSXGSSKPSSGSNRPSSGSSRPSPSRPTSTTSGSSSGFGTRPSSGSNRPSSGSSSGFGSSSSSSSGFGSSNIETLTLELVEIIVQRLERDIQSAVLSEIRAHSQNDVSVLADAILTTLRPSIIKVIRSTVNSNSKFTGFKSDIESLTTKILIKLRPIIIASIESGLKKINEQSGAAEGPLIQAVVSQVEGQIEGEVNAELQGYSGSLANADTQSLVNLIIKRLRPIIISSLKNLQRSDSRFSSISPSRFNALVDEIISRLRSIIIRYIEIALQQFTSQDALIGEFVQVVIQQLNGEVQNFVITELKGLRNLNNVNQQQIVRAVINKMTPLIRQTIQTIFRXQXRFTIFSSRVEYVIEQVLSALRPVIIEAIQFNIDVLKNQAATPKPTQPPRPTRPSKPSRPSTNNSGAKPGGGNKLTSLFGISGDNNVVVETPNYNYQYAIPFAR 703
            MKHSNNLIFIMKVFIVLSLILTLSGSSFGRSEPIPTIPKGCVFITNVQTARGGEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDYASGHAGASDINVIVSQVIQEIEIETTKTIELVLRKTNVNAPNFLPSNLVQTIVKKLRPIITTTVRRIISSSGLNLNVNEVVDNVILQIEPAILQGVESAIQGNTSFNSGKNKPGKKPTGNLSGQGENSAILIDQIIAQLRPFIVEIVSKQTKIQCQNHGGSSIGSVSXTGSSXGSSKPSSGSNRPSSGSSRPSPSRPTSTTSGSSSGFGTRPSSGSNRPSSGSSSGFGSSSSSSSGFGSSNIETLTLELVEIIVQRLERDIQSAVLSEIRAHSQNDVSVLADAILTTLRPSIIKVIRSTVNSNSKFTGFKSDIESLTTKILIKLRPIIIASIESGLKKINEQSGAAEGPLIQAVVSQVEGQIEGEVNAELQGYSGSLANADTQSLVNLIIKRLRPIIISSLKNLQRSDSRFSSISPSRFNALVDEIISRLRSIIIRYIEIALQQFTSQDALIGEFVQVVIQQLNGEVQNFVITELKGLRNLNNVNQQQIVRAVINKMTPLIRQTIQTIFRXQXRFTIFSSRVEYVIEQVLSALRPVIIEAIQFNIDVLKNQAATPKPTQPPRPTRPSKPSRPSTNNSGAKPGGGNKLTSLFGISGDNNVVVETPNYNYQYAIPFAR
Sbjct:    1 MKHSNNLIFIMKVFIVLSLILTLSGSSFGRSEPIPTIPKGCVFITNVQTARGGEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDYASGHAGASDINVIVSQVIQEIEIETTKTIELVLRKTNVNAPNFLPSNLVQTIVKKLRPIITTTVRRIISSSGLNLNVNEVVDNVILQIEPAILQGVESAIQGNTSFNSGKNKPGKKPTGNLSGQGENSAILIDQIIAQLRPFIVEIVSKQTKIQCQNHGGSSIGSVSXTGSSXGSSKPSSGSNRPSSGSSRPSPSRPTSTTSGSSSGFGTRPSSGSNRPSSGSSSGFGSSSSSSSGFGSSNIETLTLELVEIIVQRLERDIQSAVLSEIRAHSQNDVSVLADAILTTLRPSIIKVIRSTVNSNSKFTGFKSDIESLTTKILIKLRPIIIASIESGLKKINEQSGAAEGPLIQAVVSQVEGQIEGEVNAELQGYSGSLANADTQSLVNLIIKRLRPIIISSLKNLQRSDSRFSSISPSRFNALVDEIISRLRSIIIRYIEIALQQFTSQDALIGEFVQVVIQQLNGEVQNFVITELKGLRNLNNVNQQQIVRAVINKMTPLIRQTIQTIFRXQXRFTIFSSRVEYVIEQVLSALRPVIIEAIQFNIDVLKNQAATPKPTQPPRPTRPSKPSRPSTNNSGAKPGGGNKLTSLFGISGDNNVVVETPNYNYQYAIPFAR 703
[Close]
BLAST of EMLSAG00000004347 vs. L. salmonis peptides
Match: EMLSAP00000009989 (pep:novel supercontig:LSalAtl2s:LSalAtl2s653:74487:76320:-1 gene:EMLSAG00000009989 transcript:EMLSAT00000009989 description:"maker-LSalAtl2s653-snap-gene-0.37")

HSP 1 Score: 341.273 bits (874), Expect = 5.391e-111
Identity = 194/272 (71.32%), Postives = 232/272 (85.29%), Query Frame = 0 
Query:   11 MKVFIVLSLILTLSGSSFGRSEPIPTIPKGCVFITNVQTARGGEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDYASGHAGA----SDINVIVSQVIQEIEIETTKTIELVLRKTNVNAPNFLPSNLVQTIVKKLRPIITTTVRRIISSSGLNLNVNEVVDNVILQIEPAILQGVESAIQGNTSFNSGKNKPGKKPTGNLSGQGENSAILIDQIIAQLRPFIVEIVSKQTKIQCQNHGGSSIGSVSXTGSSXGSSKPSSGSNRPSSGSSR 278
            +++F+ L + + L+GS FGRS+P+  IP+ CVF+TN     GGEYSYIDPLGSLVTI YEIG NG+YTE+R+VV DYASGH G+    +D+NV+++QVIQEIE++ T TIE VL  TNVNAPNF P+NLV+ I+KKLRPIITTTVRRIISSSGLNLN+NEVV+NVI QI P+ILQGVESAI+GN+ FN+GKNKPGKKPTG+LSGQGENSA+LIDQIIAQLRPFIV+ V++QTKIQCQNHGGSS G VS TGSS GSS+PS    RPS+GSSR
Sbjct:    4 VQLFVAL-VSVALTGSVFGRSQPV-AIPEKCVFLTNTINTNGGEYSYIDPLGSLVTISYEIGANGQYTETRKVVNDYASGHGGSGSASTDVNVVINQVIQEIEVQITTTIEQVLISTNVNAPNFRPNNLVEIILKKLRPIITTTVRRIISSSGLNLNINEVVENVIAQIXPSILQGVESAIKGNSDFNNGKNKPGKKPTGSLSGQGENSALLIDQIIAQLRPFIVQTVNQQTKIQCQNHGGSSSGFVSSTGSSFGSSRPS----RPSTGSSR 269
[Close]
BLAST of EMLSAG00000004347 vs. L. salmonis peptides
Match: EMLSAP00000002228 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1421:40295:41116:1 gene:EMLSAG00000002228 transcript:EMLSAT00000002228 description:"maker-LSalAtl2s1421-augustus-gene-0.15")

HSP 1 Score: 51.2174 bits (121), Expect = 1.162e-7
Identity = 49/164 (29.88%), Postives = 72/164 (43.90%), Query Frame = 0 
Query:   10 IMKVFIVLSLILTLSGSSFGRS-------EPIPTIPKGC--------VFITNVQTARG----GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDYAS---GHAGASDINVIVSQVIQEIEIETTKTIELVLRKTNVNAPNFLPSNLVQTIVKKLRPIITTTV 151
            IMK+FI L   L L+ +S  R        +P P               +I   ++  G    GEYS++DP GSL+T+ YE G  G Y+E+R V E + S    +AGA   NV+ +                  R    + P F   ++++ IV  L P+I  TV
Sbjct:   26 IMKIFICL---LALTATSLARPQQQDEFFDPNPQYNFSYKVASDLTQTYINQDESRDGDFVTGEYSFVDPNGSLITVVYEAGPEG-YSETRTVQEGFVSISPENAGAGSTNVVDT------------------RPAPRSGPGFDEDSIIRKIVGGLTPLIEETV 167
[Close]
BLAST of EMLSAG00000004347 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold776_size99073-snap-gene-0.22 (protein:Tk00567 transcript:maker-scaffold776_size99073-snap-gene-0.22-mRNA-1 annotation:"hypothetical protein")

HSP 1 Score: 65.855 bits (159), Expect = 2.916e-11
Identity = 125/561 (22.28%), Postives = 224/561 (39.93%), Query Frame = 0 
Query:   39 KGCVFITNVQTARGG----EYSYIDPLGSLVTIKYEIGGNGEYTESR--------------QVVEDYASGHAGASDINVIVSQVIQEIEIETTKTIELVLRKTNVNAPNFLPSNLVQTIVKKLRPIITTTVRRIISSSGL-NLNVNEVVDNVILQIEPAILQGVESAIQGNTSFNSGKNKPGKKPTGNLSGQGENSAILIDQIIAQLRPFIVEIVSKQTKIQCQNHGGSSIGSVSXTGSSXGSSKPSSGSNRPSSGSSRPSPSRP--TSTTSGSSSGFGTRPSSGSNRPSSGSSSGFGSSSSSSSGFGSSNIETLTLELVEIIVQRLERDIQSAVLSEIRAHSQNDVSVLADAILTTLRPSIIKVIRSTVN-----------------SNSKFTGFKSDIESLTTKILIKLRPIIIASIESGLKKINEQSGAAEGPLIQAVVSQVEGQIEGEVNAELQGYSGSLANADTQSLVNLIIKRLRPII---ISSLKNLQRSDSRFSSISPSRFNALVDEIISRLRSIIIRYIEIALQQFTSQDALIGEFVQVVIQQLNGEVQNFV 558
            + C+ +  V+  + G    EYSY+DP+GS +T+ Y  G +G Y+E R              QV    +SG + A   NV V +VI ++E     TIE +++     + +   + + Q I  +L+P I   VR  ++   + +L   ++   VI QIEP I + +E       +  +      +           N A LI QI+ +L+P I + + +    Q      SS    S    S  S+      N     S   +   P  T T   S+       S+     S   +      ++      +  I     ELV++++ RL+  I+SA+ +       +    L   ++  L P I+  + ST                     S  T F +D   L T I+  ++P I   + +     N++S   E  L+  ++S+++ +++  +     G+S +      Q L   I+  LRP++   + + + +Q  +     + P   NA++ E+      II   +E  L Q  S D  +  F    IQ    EV+  +
Sbjct:   59 ENCICLDQVKNEKDGQTQGEYSYVDPVGSKITVSYTYGVDGAYSERRRVDKNTGGMTTVIQQVKSHQSSGTSQAQRDNV-VQEVITQLE----ATIERLVKTVVTESGSSSTAEVFQRIQTQLKPTILRLVRTTLTKYEVSDLEAADITTTVISQIEPTIREQIERVTTTTQTITTTTTTNNQA--------NRNQADLIAQILFKLKPIIQKTIEETYGPQTTQFPTSSAHQDSVPMVSEVSTVIEDDVNMEKVVSEVITQITPIITETVVQSTDQVNFLSSTSDLVGSIVVTVQPHIQTAIDEVLTADQINLADGELVKLVLARLQGKIRSAIQTSTLGSGADKSLKLEYEVVKALTPIILTQVTSTKAIIFTTATKVTSTTTTSMQESGETEFSTD---LVTTIVTNIQPHIQTVVTNVFSDSNQESSNDE--LVNLMISRLDAKVDDAIRESQTGFSVT----KNQRLHTQIVLSLRPVVQATVEAFRVVQTREIHTLVLKPEFTNAVMLEV----NGIIETQVEERLGQVVS-DLDLNAFTNSFIQDFTIEVEEVI 592
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004347 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004347 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592892268|gb|GAXK01066107.1|4.767e-457.58TSA: Calanus finmarchicus comp4960_c17_seq26 trans... [more]
gi|592892294|gb|GAXK01066081.1|6.244e-457.58TSA: Calanus finmarchicus comp4960_c16_seq29 trans... [more]
gi|592892303|gb|GAXK01066072.1|7.290e-457.58TSA: Calanus finmarchicus comp4960_c16_seq20 trans... [more]
gi|592776164|gb|GAXK01178404.1|8.167e-454.29TSA: Calanus finmarchicus comp15136_c2_seq11 trans... [more]
gi|592776168|gb|GAXK01178400.1|8.383e-454.29TSA: Calanus finmarchicus comp15136_c2_seq7 transc... [more]
gi|592776165|gb|GAXK01178403.1|8.907e-454.29TSA: Calanus finmarchicus comp15136_c2_seq10 trans... [more]
gi|592776169|gb|GAXK01178399.1|9.135e-454.29TSA: Calanus finmarchicus comp15136_c2_seq6 transc... [more]
gi|592776167|gb|GAXK01178401.1|9.461e-454.29TSA: Calanus finmarchicus comp15136_c2_seq8 transc... [more]
gi|592776170|gb|GAXK01178398.1|9.695e-454.29TSA: Calanus finmarchicus comp15136_c2_seq5 transc... [more]
gi|592892316|gb|GAXK01066059.1|9.918e-457.58TSA: Calanus finmarchicus comp4960_c16_seq7 transc... [more]

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BLAST of EMLSAG00000004347 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000043470.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s229:12106... [more]
EMLSAP000000099895.391e-11171.32pep:novel supercontig:LSalAtl2s:LSalAtl2s653:74487... [more]
EMLSAP000000022281.162e-729.88pep:novel supercontig:LSalAtl2s:LSalAtl2s1421:4029... [more]
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BLAST of EMLSAG00000004347 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004347 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004347 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004347 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold776_size99073-snap-gene-0.222.916e-1122.28protein:Tk00567 transcript:maker-scaffold776_size9... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s229supercontigLSalAtl2s229:12106..16104 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s229-snap-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004347 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004347EMLSAT00000004347-700194Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s229:12106..16104-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004347-687113 ID=EMLSAG00000004347-687113|Name=EMLSAG00000004347|organism=Lepeophtheirus salmonis|type=gene|length=3999bp|location=Sequence derived from alignment at LSalAtl2s229:12106..16104- (Lepeophtheirus salmonis)
ATGAAACATTCAAATAACTTAATATTTATCATGAAGGTGAGGAACAGGAG
TCCACCACAAATGAGGAATAACATTTATCATTTCCAACTCTTTTTAGGTA
TTTATTGTTCTCTCTCTCATCCTTACTCTCAGTGGATCATCATTTGGAAG
ATCTGAAGTAAGAAAACAAAGAAGATTATAAAAACATACATTCTATCACT
TTTTTTTATATCTTCATTACAGCCCATTCCAACAATTCCTAAGGGATGTG
TATTTATCACAAATGTCCAAACGGCGCGAGGAGGTGAATACTCGTATATT
GATCCCTTGGGCTCCCTTGTAACCATCAAGTACGAAATTGGAGGAAATGG
TGAATATACTGAATCCCGTCAAGTCGTCGAAGACTATGCATCGGGCCATG
CTGGAGCCTCAGACATCAATGTTATTGTATCCCAAGTCATTCAAGAAATT
GAAATTGAAACTACAAAAACCATTGAACTGGTCTTGAGAAAAACAAATGT
CAATGCTCCTAACTTTCTTCCAAGCAATCTTGTTCAAACAATTGTGAAGA
AGCTTAGACCCATCATTACCACTACTGTTCGTAGAATCATCTCCAGTTCG
GGGTTGAATTTGAATGTGAATGAAGTTGTCGACAATGTTATTCTTCAAAT
TGAGCCTGCAATTCTTCAGGGTGTTGAATCTGCTATTCAAGGAAATACTA
GCTTCAACTCTGGAAAGAACAAGCCAGGAAAGAAACCCACCGGTAATTTG
TCTGGACAAGGAGAAAATTCTGCTATATTGATTGATCAAATCATTGCTCA
ACTCAGACCATTCATTGTTGAAATTGTTAGTAAACAAACCAAAATTCAAT
GCCAAAACCACGGAGGATCCTCAATTGGATCAGTTTCAYCCACTGGAAGC
TCTTAKGGATCTAGCAAGCCATCATCTGGTTCAAACAGACCTTCATCTGG
ATCTAGCCGTCCATCGTCTGGTTCAAACAGACCTTCATCTGGATCTAGCC
GWCCATCATCTGGTTCAAGCAGACCTTCATCTGGATCTAGCCGTCCATCA
TCTGGTTCAAGCARACCTTCATCTGGATCTAGCCGTCCATCAACAGGTTC
AAGCAGACCTTCATCTGGATCYAGCCGWCCATCAWCWGGTTCAAGCAGAC
CYTCATCTGGATCYARCCGTCCATCWWCYGGWTCAAGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATCWTCTGG
KTCAAGTKGWCCWTCWTCRGGATCKAYRCGTCCATCWTCTGGWTCAAYCA
ACCAACWTCCGTTGGTTCCYGCTCATCTTCTGGATTTGGTACTCGTCCAT
CATCTGGKTCAAGRAGACCTTCATCTGGATCCAACCGCCCATCATCTGCC
TCAAACAGACCCACATCTGGATCTAACCGTCCATCAACTGGTTCAAGCAG
ACCAACTTCTGTCGGTTCGAGCTCATCTTCTGGGTTTGGATCTAACCAAG
TAGACCAACTTCTACTGCTTCCGGATCATCTTCTGGATTTGGTACTCGTC
CATCATCTGGATCAAGCAGKCCCTCKTCMGGATCWAGCAGACCCTCKTCT
GGATCAAGCAGKCCCTCATCTGGATCAAGCCGRCCATCAACTGGTTCAAG
CAGACCAACTTCCGTTGGTTCCAGCTCATCTTCTGGATTTGGAACTCGTC
CATCATCTGGATCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCCGACCATCATCTGGTTCAAGCAGGCCCTCATCTG
GATCTAACCGTCCATCAACTGGTTCAAGCAGACCAACATCRMTRGGTTCR
YGCTCATCTTCTGGWTTTGGATCTAGACCAAGTAGGCCAACTTCTACCAC
TTCTGGATCATCTTCTGGATTTGGAACTCGCCCATCATCTGGTTCCAACC
GTCCATCCAGCGGTTCGTCTTCAGGCTTTGGCTCATCCAGCAGTTCCTCT
TCAGGTTTTGGCTCATCCAACATTGAAACTTTAACCCTTGAATTGGTTGA
AATCATTGTTCAAAGATTGGAACGTGATATTCAATCTGCTGTCCTTTCTG
AAATCAGAGCTCATTCCCAAAATGACGTAAGTGTTTTAGCTGATGCTATT
TTAACCACTCTTCGACCATCAATCATTAAAGTAATCAGAAGTACTGTAAA
CAGCAACTCTAAGTTTACTGGATTCAAATCTGATATTGAGTCCCTTACCA
CCAAAATCTTAATCAAACTCAGACCCATCATTATAGCTTCTATCGAATCT
GGATTAAAAAAGATCAATGAACAAAGTGGAGCTGCTGAGGGTCCACTCAT
TCAAGCTGTTGTTTCACAAGTTGAAGGACAAATTGAAGGTGAAGTCAATG
CTGAACTCCAAGGATATTCTGGATCTTTGGCCAATGCCGACACACAATCA
TTAGTTAATCTTATAATCAAGAGACTCAGACCTATCATTATCTCATCTTT
GAAGAATTTACAAAGGTCTGACTCTCGTTTCTCATCTATTTCCCCATCTC
GATTCAATGCCTTAGTTGATGAAATTATATCTCGTCTCCGAAGCATCATT
ATCAGATACATTGAGATTGCACTTCAACAATTTACGTCTCAAGATGCTCT
CATTGGAGAATTCGTACAAGTTGTGATTCAGCAATTGAATGGAGAAGTAC
AAAATTTTGTGATCACTGAGCTTAAGGGTCTAAGAAACCTCAACAATGTT
AACCAACAGCAAATTGTCAGAGCAGTTATCAATAAAATGACTCCCCTCAT
TCGTCAAACCATTCAAACCATATTCCGTKCCCAARCCCGGTTCACCATCT
TTTCAAGCCGAGTTGAATACGTCATTGAGCAAGTTCTTAGTGCTCTTAGA
CCCGTCATCATTGAAGCAATTCAATTCAATATTGATGTTCTTAAAAACCA
AGCTGCTACACCCAAGCCTACTCAACCCCCTAGGCCTACAAGACCATCCA
AACCTTCTCGTCCCTCAACAAATAATTCTGGTGCTAAGCCCGGAGGAGGA
AACAAATTAACTTCCTTGTTTGGAATTTCTGGAGATAACAACGTTGTTGT
TGAGACGCCTAATTATAATTATCAGTACGCCATTCCCTTTGCCCGATAA
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