EMLSAG00000004347, EMLSAG00000004347-687113 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Match: gi|592792729|gb|GAXK01161839.1| (TSA: Calanus finmarchicus comp35971_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.5134 bits (101), Expect = 2.079e-3 Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 0 Query: 53 GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDY 87 G YSY+DPLGSL+T+ Y G G Y+E+R+V E + Sbjct: 797 GTYSYVDPLGSLITVTYTAGPMG-YSENREVQEGF 898
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Match: gi|592792721|gb|GAXK01161847.1| (TSA: Calanus finmarchicus comp35971_c0_seq9 transcribed RNA sequence) HSP 1 Score: 42.3578 bits (98), Expect = 2.192e-3 Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 0 Query: 53 GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDY 87 G YSY+DPLGSL+T+ Y G G Y+E+R+V E + Sbjct: 235 GTYSYVDPLGSLITVTYTAGPMG-YSENREVQEGF 336
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Match: gi|592792722|gb|GAXK01161846.1| (TSA: Calanus finmarchicus comp35971_c0_seq8 transcribed RNA sequence) HSP 1 Score: 42.3578 bits (98), Expect = 2.239e-3 Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 0 Query: 53 GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDY 87 G YSY+DPLGSL+T+ Y G G Y+E+R+V E + Sbjct: 256 GTYSYVDPLGSLITVTYTAGPMG-YSENREVQEGF 357
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Match: gi|592792723|gb|GAXK01161845.1| (TSA: Calanus finmarchicus comp35971_c0_seq7 transcribed RNA sequence) HSP 1 Score: 42.3578 bits (98), Expect = 2.442e-3 Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 0 Query: 53 GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDY 87 G YSY+DPLGSL+T+ Y G G Y+E+R+V E + Sbjct: 277 GTYSYVDPLGSLITVTYTAGPMG-YSENREVQEGF 378
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Match: gi|592783044|gb|GAXK01171524.1| (TSA: Calanus finmarchicus comp63906_c1_seq1 transcribed RNA sequence) HSP 1 Score: 42.3578 bits (98), Expect = 4.398e-3 Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = 0 Query: 53 GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDY 87 G YSY+DP G+L+T+ Y G G YTE+R+ DY Sbjct: 745 GSYSYVDPTGALITVNYRAGLMG-YTETREKQADY 846
BLAST of EMLSAG00000004347 vs. L. salmonis peptides
Match: EMLSAP00000004347 (pep:novel supercontig:LSalAtl2s:LSalAtl2s229:12106:16104:-1 gene:EMLSAG00000004347 transcript:EMLSAT00000004347 description:"maker-LSalAtl2s229-snap-gene-0.4") HSP 1 Score: 1368.6 bits (3541), Expect = 0.000e+0 Identity = 703/703 (100.00%), Postives = 703/703 (100.00%), Query Frame = 0 Query: 1 MKHSNNLIFIMKVFIVLSLILTLSGSSFGRSEPIPTIPKGCVFITNVQTARGGEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDYASGHAGASDINVIVSQVIQEIEIETTKTIELVLRKTNVNAPNFLPSNLVQTIVKKLRPIITTTVRRIISSSGLNLNVNEVVDNVILQIEPAILQGVESAIQGNTSFNSGKNKPGKKPTGNLSGQGENSAILIDQIIAQLRPFIVEIVSKQTKIQCQNHGGSSIGSVSXTGSSXGSSKPSSGSNRPSSGSSRPSPSRPTSTTSGSSSGFGTRPSSGSNRPSSGSSSGFGSSSSSSSGFGSSNIETLTLELVEIIVQRLERDIQSAVLSEIRAHSQNDVSVLADAILTTLRPSIIKVIRSTVNSNSKFTGFKSDIESLTTKILIKLRPIIIASIESGLKKINEQSGAAEGPLIQAVVSQVEGQIEGEVNAELQGYSGSLANADTQSLVNLIIKRLRPIIISSLKNLQRSDSRFSSISPSRFNALVDEIISRLRSIIIRYIEIALQQFTSQDALIGEFVQVVIQQLNGEVQNFVITELKGLRNLNNVNQQQIVRAVINKMTPLIRQTIQTIFRXQXRFTIFSSRVEYVIEQVLSALRPVIIEAIQFNIDVLKNQAATPKPTQPPRPTRPSKPSRPSTNNSGAKPGGGNKLTSLFGISGDNNVVVETPNYNYQYAIPFAR 703 MKHSNNLIFIMKVFIVLSLILTLSGSSFGRSEPIPTIPKGCVFITNVQTARGGEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDYASGHAGASDINVIVSQVIQEIEIETTKTIELVLRKTNVNAPNFLPSNLVQTIVKKLRPIITTTVRRIISSSGLNLNVNEVVDNVILQIEPAILQGVESAIQGNTSFNSGKNKPGKKPTGNLSGQGENSAILIDQIIAQLRPFIVEIVSKQTKIQCQNHGGSSIGSVSXTGSSXGSSKPSSGSNRPSSGSSRPSPSRPTSTTSGSSSGFGTRPSSGSNRPSSGSSSGFGSSSSSSSGFGSSNIETLTLELVEIIVQRLERDIQSAVLSEIRAHSQNDVSVLADAILTTLRPSIIKVIRSTVNSNSKFTGFKSDIESLTTKILIKLRPIIIASIESGLKKINEQSGAAEGPLIQAVVSQVEGQIEGEVNAELQGYSGSLANADTQSLVNLIIKRLRPIIISSLKNLQRSDSRFSSISPSRFNALVDEIISRLRSIIIRYIEIALQQFTSQDALIGEFVQVVIQQLNGEVQNFVITELKGLRNLNNVNQQQIVRAVINKMTPLIRQTIQTIFRXQXRFTIFSSRVEYVIEQVLSALRPVIIEAIQFNIDVLKNQAATPKPTQPPRPTRPSKPSRPSTNNSGAKPGGGNKLTSLFGISGDNNVVVETPNYNYQYAIPFAR Sbjct: 1 MKHSNNLIFIMKVFIVLSLILTLSGSSFGRSEPIPTIPKGCVFITNVQTARGGEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDYASGHAGASDINVIVSQVIQEIEIETTKTIELVLRKTNVNAPNFLPSNLVQTIVKKLRPIITTTVRRIISSSGLNLNVNEVVDNVILQIEPAILQGVESAIQGNTSFNSGKNKPGKKPTGNLSGQGENSAILIDQIIAQLRPFIVEIVSKQTKIQCQNHGGSSIGSVSXTGSSXGSSKPSSGSNRPSSGSSRPSPSRPTSTTSGSSSGFGTRPSSGSNRPSSGSSSGFGSSSSSSSGFGSSNIETLTLELVEIIVQRLERDIQSAVLSEIRAHSQNDVSVLADAILTTLRPSIIKVIRSTVNSNSKFTGFKSDIESLTTKILIKLRPIIIASIESGLKKINEQSGAAEGPLIQAVVSQVEGQIEGEVNAELQGYSGSLANADTQSLVNLIIKRLRPIIISSLKNLQRSDSRFSSISPSRFNALVDEIISRLRSIIIRYIEIALQQFTSQDALIGEFVQVVIQQLNGEVQNFVITELKGLRNLNNVNQQQIVRAVINKMTPLIRQTIQTIFRXQXRFTIFSSRVEYVIEQVLSALRPVIIEAIQFNIDVLKNQAATPKPTQPPRPTRPSKPSRPSTNNSGAKPGGGNKLTSLFGISGDNNVVVETPNYNYQYAIPFAR 703
BLAST of EMLSAG00000004347 vs. L. salmonis peptides
Match: EMLSAP00000009989 (pep:novel supercontig:LSalAtl2s:LSalAtl2s653:74487:76320:-1 gene:EMLSAG00000009989 transcript:EMLSAT00000009989 description:"maker-LSalAtl2s653-snap-gene-0.37") HSP 1 Score: 341.273 bits (874), Expect = 5.391e-111 Identity = 194/272 (71.32%), Postives = 232/272 (85.29%), Query Frame = 0 Query: 11 MKVFIVLSLILTLSGSSFGRSEPIPTIPKGCVFITNVQTARGGEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDYASGHAGA----SDINVIVSQVIQEIEIETTKTIELVLRKTNVNAPNFLPSNLVQTIVKKLRPIITTTVRRIISSSGLNLNVNEVVDNVILQIEPAILQGVESAIQGNTSFNSGKNKPGKKPTGNLSGQGENSAILIDQIIAQLRPFIVEIVSKQTKIQCQNHGGSSIGSVSXTGSSXGSSKPSSGSNRPSSGSSR 278 +++F+ L + + L+GS FGRS+P+ IP+ CVF+TN GGEYSYIDPLGSLVTI YEIG NG+YTE+R+VV DYASGH G+ +D+NV+++QVIQEIE++ T TIE VL TNVNAPNF P+NLV+ I+KKLRPIITTTVRRIISSSGLNLN+NEVV+NVI QI P+ILQGVESAI+GN+ FN+GKNKPGKKPTG+LSGQGENSA+LIDQIIAQLRPFIV+ V++QTKIQCQNHGGSS G VS TGSS GSS+PS RPS+GSSR Sbjct: 4 VQLFVAL-VSVALTGSVFGRSQPV-AIPEKCVFLTNTINTNGGEYSYIDPLGSLVTISYEIGANGQYTETRKVVNDYASGHGGSGSASTDVNVVINQVIQEIEVQITTTIEQVLISTNVNAPNFRPNNLVEIILKKLRPIITTTVRRIISSSGLNLNINEVVENVIAQIXPSILQGVESAIKGNSDFNNGKNKPGKKPTGSLSGQGENSALLIDQIIAQLRPFIVQTVNQQTKIQCQNHGGSSSGFVSSTGSSFGSSRPS----RPSTGSSR 269
BLAST of EMLSAG00000004347 vs. L. salmonis peptides
Match: EMLSAP00000002228 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1421:40295:41116:1 gene:EMLSAG00000002228 transcript:EMLSAT00000002228 description:"maker-LSalAtl2s1421-augustus-gene-0.15") HSP 1 Score: 51.2174 bits (121), Expect = 1.162e-7 Identity = 49/164 (29.88%), Postives = 72/164 (43.90%), Query Frame = 0 Query: 10 IMKVFIVLSLILTLSGSSFGRS-------EPIPTIPKGC--------VFITNVQTARG----GEYSYIDPLGSLVTIKYEIGGNGEYTESRQVVEDYAS---GHAGASDINVIVSQVIQEIEIETTKTIELVLRKTNVNAPNFLPSNLVQTIVKKLRPIITTTV 151 IMK+FI L L L+ +S R +P P +I ++ G GEYS++DP GSL+T+ YE G G Y+E+R V E + S +AGA NV+ + R + P F ++++ IV L P+I TV Sbjct: 26 IMKIFICL---LALTATSLARPQQQDEFFDPNPQYNFSYKVASDLTQTYINQDESRDGDFVTGEYSFVDPNGSLITVVYEAGPEG-YSETRTVQEGFVSISPENAGAGSTNVVDT------------------RPAPRSGPGFDEDSIIRKIVGGLTPLIEETV 167
BLAST of EMLSAG00000004347 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold776_size99073-snap-gene-0.22 (protein:Tk00567 transcript:maker-scaffold776_size99073-snap-gene-0.22-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 65.855 bits (159), Expect = 2.916e-11 Identity = 125/561 (22.28%), Postives = 224/561 (39.93%), Query Frame = 0 Query: 39 KGCVFITNVQTARGG----EYSYIDPLGSLVTIKYEIGGNGEYTESR--------------QVVEDYASGHAGASDINVIVSQVIQEIEIETTKTIELVLRKTNVNAPNFLPSNLVQTIVKKLRPIITTTVRRIISSSGL-NLNVNEVVDNVILQIEPAILQGVESAIQGNTSFNSGKNKPGKKPTGNLSGQGENSAILIDQIIAQLRPFIVEIVSKQTKIQCQNHGGSSIGSVSXTGSSXGSSKPSSGSNRPSSGSSRPSPSRP--TSTTSGSSSGFGTRPSSGSNRPSSGSSSGFGSSSSSSSGFGSSNIETLTLELVEIIVQRLERDIQSAVLSEIRAHSQNDVSVLADAILTTLRPSIIKVIRSTVN-----------------SNSKFTGFKSDIESLTTKILIKLRPIIIASIESGLKKINEQSGAAEGPLIQAVVSQVEGQIEGEVNAELQGYSGSLANADTQSLVNLIIKRLRPII---ISSLKNLQRSDSRFSSISPSRFNALVDEIISRLRSIIIRYIEIALQQFTSQDALIGEFVQVVIQQLNGEVQNFV 558 + C+ + V+ + G EYSY+DP+GS +T+ Y G +G Y+E R QV +SG + A NV V +VI ++E TIE +++ + + + + Q I +L+P I VR ++ + +L ++ VI QIEP I + +E + + + N A LI QI+ +L+P I + + + Q SS S S S+ N S + P T T S+ S+ S + ++ + I ELV++++ RL+ I+SA+ + + L ++ L P I+ + ST S T F +D L T I+ ++P I + + N++S E L+ ++S+++ +++ + G+S + Q L I+ LRP++ + + + +Q + + P NA++ E+ II +E L Q S D + F IQ EV+ + Sbjct: 59 ENCICLDQVKNEKDGQTQGEYSYVDPVGSKITVSYTYGVDGAYSERRRVDKNTGGMTTVIQQVKSHQSSGTSQAQRDNV-VQEVITQLE----ATIERLVKTVVTESGSSSTAEVFQRIQTQLKPTILRLVRTTLTKYEVSDLEAADITTTVISQIEPTIREQIERVTTTTQTITTTTTTNNQA--------NRNQADLIAQILFKLKPIIQKTIEETYGPQTTQFPTSSAHQDSVPMVSEVSTVIEDDVNMEKVVSEVITQITPIITETVVQSTDQVNFLSSTSDLVGSIVVTVQPHIQTAIDEVLTADQINLADGELVKLVLARLQGKIRSAIQTSTLGSGADKSLKLEYEVVKALTPIILTQVTSTKAIIFTTATKVTSTTTTSMQESGETEFSTD---LVTTIVTNIQPHIQTVVTNVFSDSNQESSNDE--LVNLMISRLDAKVDDAIRESQTGFSVT----KNQRLHTQIVLSLRPVVQATVEAFRVVQTREIHTLVLKPEFTNAVMLEV----NGIIETQVEERLGQVVS-DLDLNAFTNSFIQDFTIEVEEVI 592 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004347 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004347 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000004347 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000004347 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004347 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000004347 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000004347 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s229:12106..16104- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004347-687113 ID=EMLSAG00000004347-687113|Name=EMLSAG00000004347|organism=Lepeophtheirus salmonis|type=gene|length=3999bp|location=Sequence derived from alignment at LSalAtl2s229:12106..16104- (Lepeophtheirus salmonis)back to top Add to Basket
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