EMLSAG00000004361, EMLSAG00000004361-687127 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004361
Unique NameEMLSAG00000004361-687127
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000004361 vs. C. finmarchicus
Match: gi|592854975|gb|GAXK01102569.1| (TSA: Calanus finmarchicus comp5275767_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.931e+0
Identity = 25/99 (25.25%), Postives = 46/99 (46.46%), Query Frame = 0 
Query:   20 GSYFAAWWYCNGVKMDKTDHYILEDDLNGNETMRKESNLKLYTGLARILKLSSLQESDAPLP--PSAPGDLNLEQPHYFSAFSVTKTSSKAMSSLSEPR 116
            G +F+   YC  V  +       +D    +   RKE N+KL   + ++L+  +  E D P+    S  G L+++Q    +AF    +  ++M +  EP+
Sbjct:  128 GIFFSLLNYCVEVYGNVWGLPTYDDQARQSTAFRKEDNMKLQILVNKVLRSLTGLERDTPVSVLSSVSGKLSVQQR---TAFFTINSVHRSMQT-REPQ 412
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BLAST of EMLSAG00000004361 vs. C. finmarchicus
Match: gi|592830389|gb|GAXK01127155.1| (TSA: Calanus finmarchicus comp47803_c4_seq8 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.341e+0
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   35 DKTDHYILEDDLNGNETMRKESNLKLYTGLARILKLSSLQESDAP 79
            D +D + ++ DL GN  + +E  L +YT +A +L L ++   D P
Sbjct:   60 DYSDFHTVDQDL-GNIGLTQEDRLSVYTTIAAVLHLGNITFEDNP 191
[Close]
BLAST of EMLSAG00000004361 vs. C. finmarchicus
Match: gi|592830394|gb|GAXK01127150.1| (TSA: Calanus finmarchicus comp47803_c4_seq3 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 2.384e+0
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   35 DKTDHYILEDDLNGNETMRKESNLKLYTGLARILKLSSLQESDAP 79
            D +D + ++ DL GN  + +E  L +YT +A +L L ++   D P
Sbjct:   64 DYSDFHTVDQDL-GNIGLTQEDRLSVYTTIAAVLHLGNITFEDNP 195
[Close]
BLAST of EMLSAG00000004361 vs. C. finmarchicus
Match: gi|592830399|gb|GAXK01127145.1| (TSA: Calanus finmarchicus comp47803_c3_seq27 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.460e+0
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   35 DKTDHYILEDDLNGNETMRKESNLKLYTGLARILKLSSLQESDAP 79
            D +D + ++ DL GN  + +E  L +YT +A +L L ++   D P
Sbjct:  226 DYSDFHTVDQDL-GNIGLTQEDRLSVYTTIAAVLHLGNITFEDNP 357
[Close]
BLAST of EMLSAG00000004361 vs. C. finmarchicus
Match: gi|592830392|gb|GAXK01127152.1| (TSA: Calanus finmarchicus comp47803_c4_seq5 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 2.594e+0
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   35 DKTDHYILEDDLNGNETMRKESNLKLYTGLARILKLSSLQESDAP 79
            D +D + ++ DL GN  + +E  L +YT +A +L L ++   D P
Sbjct:   64 DYSDFHTVDQDL-GNIGLTQEDRLSVYTTIAAVLHLGNITFEDNP 195
[Close]
BLAST of EMLSAG00000004361 vs. C. finmarchicus
Match: gi|592830403|gb|GAXK01127141.1| (TSA: Calanus finmarchicus comp47803_c3_seq23 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.767e+0
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   35 DKTDHYILEDDLNGNETMRKESNLKLYTGLARILKLSSLQESDAP 79
            D +D + ++ DL GN  + +E  L +YT +A +L L ++   D P
Sbjct:  361 DYSDFHTVDQDL-GNIGLTQEDRLSVYTTIAAVLHLGNITFEDNP 492
[Close]
BLAST of EMLSAG00000004361 vs. C. finmarchicus
Match: gi|592830404|gb|GAXK01127140.1| (TSA: Calanus finmarchicus comp47803_c3_seq22 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.809e+0
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   35 DKTDHYILEDDLNGNETMRKESNLKLYTGLARILKLSSLQESDAP 79
            D +D + ++ DL GN  + +E  L +YT +A +L L ++   D P
Sbjct:  361 DYSDFHTVDQDL-GNIGLTQEDRLSVYTTIAAVLHLGNITFEDNP 492
[Close]
BLAST of EMLSAG00000004361 vs. C. finmarchicus
Match: gi|592830413|gb|GAXK01127131.1| (TSA: Calanus finmarchicus comp47803_c3_seq13 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 2.825e+0
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   35 DKTDHYILEDDLNGNETMRKESNLKLYTGLARILKLSSLQESDAP 79
            D +D + ++ DL GN  + +E  L +YT +A +L L ++   D P
Sbjct:  694 DYSDFHTVDQDL-GNIGLTQEDRLSVYTTIAAVLHLGNITFEDNP 825
[Close]
BLAST of EMLSAG00000004361 vs. C. finmarchicus
Match: gi|592830417|gb|GAXK01127127.1| (TSA: Calanus finmarchicus comp47803_c3_seq9 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 2.975e+0
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   35 DKTDHYILEDDLNGNETMRKESNLKLYTGLARILKLSSLQESDAP 79
            D +D + ++ DL GN  + +E  L +YT +A +L L ++   D P
Sbjct: 1066 DYSDFHTVDQDL-GNIGLTQEDRLSVYTTIAAVLHLGNITFEDNP 1197
[Close]
BLAST of EMLSAG00000004361 vs. C. finmarchicus
Match: gi|592830412|gb|GAXK01127132.1| (TSA: Calanus finmarchicus comp47803_c3_seq14 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.987e+0
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   35 DKTDHYILEDDLNGNETMRKESNLKLYTGLARILKLSSLQESDAP 79
            D +D + ++ DL GN  + +E  L +YT +A +L L ++   D P
Sbjct:  694 DYSDFHTVDQDL-GNIGLTQEDRLSVYTTIAAVLHLGNITFEDNP 825
[Close]
BLAST of EMLSAG00000004361 vs. L. salmonis peptides
Match: EMLSAP00000004361 (pep:novel supercontig:LSalAtl2s:LSalAtl2s229:661733:662794:1 gene:EMLSAG00000004361 transcript:EMLSAT00000004361 description:"maker-LSalAtl2s229-augustus-gene-6.14")

HSP 1 Score: 243.817 bits (621), Expect = 6.027e-84
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 
Query:    1 MMSGFELILLILAILGLLSGSYFAAWWYCNGVKMDKTDHYILEDDLNGNETMRKESNLKLYTGLARILKLSSLQESDAPLPPSAPGDLNLEQPHYFSAFSVTKTSSKAMSSLSEPRNLP 119
            MMSGFELILLILAILGLLSGSYFAAWWYCNGVKMDKTDHYILEDDLNGNETMRKESNLKLYTGLARILKLSSLQESDAPLPPSAPGDLNLEQPHYFSAFSVTKTSSKAMSSLSEPRNLP
Sbjct:    1 MMSGFELILLILAILGLLSGSYFAAWWYCNGVKMDKTDHYILEDDLNGNETMRKESNLKLYTGLARILKLSSLQESDAPLPPSAPGDLNLEQPHYFSAFSVTKTSSKAMSSLSEPRNLP 119
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004361 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004361 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 13
Match NameE-valueIdentityDescription
gi|592854975|gb|GAXK01102569.1|1.931e+025.25TSA: Calanus finmarchicus comp5275767_c0_seq1 tran... [more]
gi|592830389|gb|GAXK01127155.1|2.341e+033.33TSA: Calanus finmarchicus comp47803_c4_seq8 transc... [more]
gi|592830394|gb|GAXK01127150.1|2.384e+033.33TSA: Calanus finmarchicus comp47803_c4_seq3 transc... [more]
gi|592830399|gb|GAXK01127145.1|2.460e+033.33TSA: Calanus finmarchicus comp47803_c3_seq27 trans... [more]
gi|592830392|gb|GAXK01127152.1|2.594e+033.33TSA: Calanus finmarchicus comp47803_c4_seq5 transc... [more]
gi|592830403|gb|GAXK01127141.1|2.767e+033.33TSA: Calanus finmarchicus comp47803_c3_seq23 trans... [more]
gi|592830404|gb|GAXK01127140.1|2.809e+033.33TSA: Calanus finmarchicus comp47803_c3_seq22 trans... [more]
gi|592830413|gb|GAXK01127131.1|2.825e+033.33TSA: Calanus finmarchicus comp47803_c3_seq13 trans... [more]
gi|592830417|gb|GAXK01127127.1|2.975e+033.33TSA: Calanus finmarchicus comp47803_c3_seq9 transc... [more]
gi|592830412|gb|GAXK01127132.1|2.987e+033.33TSA: Calanus finmarchicus comp47803_c3_seq14 trans... [more]

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BLAST of EMLSAG00000004361 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000043616.027e-84100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s229:66173... [more]
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BLAST of EMLSAG00000004361 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004361 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004361 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004361 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s229supercontigLSalAtl2s229:661733..662794 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s229-augustus-gene-6.14
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004361 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004361EMLSAT00000004361-700208Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s229:661733..662794+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004361-687127 ID=EMLSAG00000004361-687127|Name=EMLSAG00000004361|organism=Lepeophtheirus salmonis|type=gene|length=1062bp|location=Sequence derived from alignment at LSalAtl2s229:661733..662794+ (Lepeophtheirus salmonis)
ATATGTACTAGCCATTGTTAGATTATAAATTATGATGAGTGGATTTGAGC
TTATTTTACTGATCCTTGCCATTTTGGGGCTTTTATCCGGATCCTACTTT
GCGGCATGGTGGTATTGTAATGGTGTCAAAATGGACAAAACGGACCACTA
CATTTTAGAAGATGATTTAAACGGAAACGAAACGATGCGAAAGGAATCCA
ATTTGAAGTTGTATACGGGGTTAGGTAATACTCATATCTAATTTATGGAA
TTATACCATCTTATCTGTGCTATTCTTTTTAATTATTTATTGACCTTTGT
CCGGACCTGTAAAACGTTTTCATTGACGTTCTAAATTGCATCATAATTGA
AGGAGACGCCATTTTGGGGACTCAAAGTTAATATTTCTACTACATAAAAG
GAACTAATTTCCAATAAATCTTAATGAAACTCCATCAAATTACTTTAAAA
ATACAAAAAGACTTAAATACTACTTTCACACCAACGATAAACATTGATAT
TTGAATATATACTAAAAATACATAGATTTTGTACAAATCGATCCTTTTTT
AAGGATCAATTAGGGATGGATAACTAGAGAAAAATATAAATAGTTAGTTT
GTTTTACCCATATGGAAATAAGATTATATAACGATGTAATTCTATATTTG
TAATACACTTTAGGGGTATACATATGAATATAATGAAACTTGGCAATAGA
GATTAAAGTTTTAAGACCATTTGACGTGATCCAATAGTCCGCTATTTTCC
TTAATATTAATGAAAAAAGGAGTTTCTTTGTTATATAAATCCGTTATTAA
CCCCTCAAAATGGCCGGCATCAACATTGCAGACGTCACTCTGTAGCTATA
TTATAATTAAATATTTGCTATTTCCCCTAGATACTGTGGATGAAGCTAGA
ATTCTCAAACTGTCCTCACTTCAAGAGTCTGATGCCCCTCTACCCCCAAG
TGCACCAGGGGATTTGAATCTTGAGCAACCACACTATTTTTCAGCCTTCT
CTGTCACGAAAACTTCATCTAAGGCCATGTCTTCTCTCTCAGAGCCAAGG
AATTTACCTTAA
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