EMLSAG00000004570, EMLSAG00000004570-687336 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004570 vs. C. finmarchicus
Match: gi|592890183|gb|GAXK01068192.1| (TSA: Calanus finmarchicus comp17106_c0_seq1 transcribed RNA sequence) HSP 1 Score: 88.5817 bits (218), Expect = 3.387e-20 Identity = 51/163 (31.29%), Postives = 85/163 (52.15%), Query Frame = 0 Query: 35 IRLNSVRMAEANLHNE-NLCFFRTMCAVGT-QRTVPIMTLAAGIVGFRKILDKVMDDIXDSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSCS 195 I+ S AE++L N N C C VGT + +P +LAA + +++ V+ S P++ + +++E+G T+ + LC ++F C A + A+ V C ++G +CPG+SI C+LCG+F PG CG C + ++CG S Y C+ Sbjct: 125 IQQQSALTAESSLSNTMNRCLLNQFCQVGTAEGRLPEDSLAAALYQSYNVVNTVLQTSSRSN----PMPNMQKIKSAFELGQKTRKIQLCAEVFEC---ADRNADIAIPVPTSRKTVDCGSLGKVCPGLSISCSLCGMFIPGLCGAVCPMAALFCGSSGYLCA 592
BLAST of EMLSAG00000004570 vs. C. finmarchicus
Match: gi|592890182|gb|GAXK01068193.1| (TSA: Calanus finmarchicus comp17106_c1_seq1 transcribed RNA sequence) HSP 1 Score: 88.5817 bits (218), Expect = 3.586e-20 Identity = 51/163 (31.29%), Postives = 85/163 (52.15%), Query Frame = 0 Query: 35 IRLNSVRMAEANLHNE-NLCFFRTMCAVGT-QRTVPIMTLAAGIVGFRKILDKVMDDIXDSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSCS 195 I+ S AE++L N N C C VGT + +P +LAA + +++ V+ S P++ + +++E+G T+ + LC ++F C A + A+ V C ++G +CPG+SI C+LCG+F PG CG C + ++CG S Y C+ Sbjct: 266 IQQQSALTAESSLSNTMNRCLLNQFCQVGTAEGRLPEDSLAAALYQSYNVVNTVLQTSSRSN----PMPNMQKIKSAFELGQKTRKIQLCAEVFEC---ADRNADIAIPVPTSRKTVDCGSLGKVCPGLSISCSLCGMFIPGLCGAVCPMAALFCGSSGYLCA 733
BLAST of EMLSAG00000004570 vs. C. finmarchicus
Match: gi|592857514|gb|GAXK01100048.1| (TSA: Calanus finmarchicus comp7306_c1_seq1 transcribed RNA sequence) HSP 1 Score: 71.633 bits (174), Expect = 1.519e-14 Identity = 52/173 (30.06%), Postives = 77/173 (44.51%), Query Frame = 0 Query: 31 VLQEIRLNSVRMAEANLHN---ENLCFFRTMCAVGT---QRTVPI---MTLAAGIVGFRKILDKVMDDIXDSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSC 194 VLQE + +AEA + ++ C R +C G R P +T+ I F L K+ + N N + + EVG + C L+ C A R TC+A G++CPG+++ C++CG+FAP CG C G+YCGV+ YSC Sbjct: 171 VLQE---QGIILAEATFDSTLGKSSCLARELCQFGAGNEARFNPFNEQITIGTAIDTFTTFLSKMKNSATRETKNIDNL------LGAVEVGKALGK-SACRSLYECATPAPK------------GRVTCDAAGNVCPGLAMSCSMCGIFAPPLCGAACTAAGLYCGVAGYSC 623
BLAST of EMLSAG00000004570 vs. C. finmarchicus
Match: gi|592942601|gb|GAXK01015952.1| (TSA: Calanus finmarchicus comp205857_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 2.640e+0 Identity = 23/78 (29.49%), Postives = 33/78 (42.31%), Query Frame = 0 Query: 137 NEAVTVKHRNSRATC-------NAVGSLCPGVSI-------GCALCGVFAPGTCGQQCIVGGIYCGVSSYSCSYKDKE 200 NE+ +KH+N + TC N+ G+L VS+ C LCG C + I+ G Y C + D E Sbjct: 1758 NESSVLKHKNPKFTCRKCGFVANSSGTLTRHVSVVHRGIRWSCKLCGYVTTVKCSMVRHIQSIHQGW-RYQCPFCDHE 1988
BLAST of EMLSAG00000004570 vs. C. finmarchicus
Match: gi|592875704|gb|GAXK01081873.1| (TSA: Calanus finmarchicus comp4364223_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 4.641e+0 Identity = 19/62 (30.65%), Postives = 27/62 (43.55%), Query Frame = 0 Query: 97 EYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLC 158 E S+ + +A G S D C+K F +A L E V+ +HR TC+ G C Sbjct: 129 EKKLISLVKQIAVVGHGKSEHACDECDKTF----SAKCTLKEHVSAEHRKKSHTCDECGETC 302
BLAST of EMLSAG00000004570 vs. C. finmarchicus
Match: gi|592918455|gb|GAXK01039920.1| (TSA: Calanus finmarchicus comp273035_c1_seq1 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 6.769e+0 Identity = 11/23 (47.83%), Postives = 13/23 (56.52%), Query Frame = 0 Query: 160 GVSIGCALCGVFAPGTCGQQCIV 182 G +I C LCGV PG C C + Sbjct: 1035 GKAIACVLCGVLTPGLCDVACKI 1103
BLAST of EMLSAG00000004570 vs. L. salmonis peptides
Match: EMLSAP00000004570 (pep:novel supercontig:LSalAtl2s:LSalAtl2s238:699874:700592:-1 gene:EMLSAG00000004570 transcript:EMLSAT00000004570 description:"maker-LSalAtl2s238-augustus-gene-7.20") HSP 1 Score: 411.379 bits (1056), Expect = 2.338e-147 Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0 Query: 1 MISKIAIIFFGFVGLSLASFKANLANNEATVLQEIRLNSVRMAEANLHNENLCFFRTMCAVGTQRTVPIMTLAAGIVGFRKILDKVMDDIXDSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSCSYKDKED 201 MISKIAIIFFGFVGLSLASFKANLANNEATVLQEIRLNSVRMAEANLHNENLCFFRTMCAVGTQRTVPIMTLAAGIVGFRKILDKVMDDIXDSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSCSYKDKED Sbjct: 1 MISKIAIIFFGFVGLSLASFKANLANNEATVLQEIRLNSVRMAEANLHNENLCFFRTMCAVGTQRTVPIMTLAAGIVGFRKILDKVMDDIXDSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSCSYKDKED 201
BLAST of EMLSAG00000004570 vs. L. salmonis peptides
Match: EMLSAP00000006295 (pep:novel supercontig:LSalAtl2s:LSalAtl2s342:191019:196022:-1 gene:EMLSAG00000006295 transcript:EMLSAT00000006295 description:"maker-LSalAtl2s342-augustus-gene-2.18") HSP 1 Score: 93.5893 bits (231), Expect = 5.876e-22 Identity = 58/170 (34.12%), Postives = 83/170 (48.82%), Query Frame = 0 Query: 30 TVLQEIRLNSVRMAEANLH--NENLCFFRTMCAVGTQRTVPIMTLAAGIVGFRKILDKVMDDIXDSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSCSYK 197 TVL ++R+ S MAE L + C ++ C V V A +L +++D++ SG + FP I VA+Y VG TKN +C+ LF C + + R C A +LCPG++I C LC + +P TCG C + IYCG S YSC+ K Sbjct: 72 TVLTQVRMQSAIMAEKYLRTSEDTQCTKKSFCDVAALSNV--NENAKATYSSVNVLTQMLDEV--SG-QDKEFPHISSLVAAYTVGTKTKNGTICKWLFACNKPQEII----------EGRVNCRATSALCPGIAISCGLCAIISPETCGVVCPIAAIYCGTSGYSCAKK 226
BLAST of EMLSAG00000004570 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold301_size216225-snap-gene-0.21 (protein:Tk06224 transcript:maker-scaffold301_size216225-snap-gene-0.21-mRNA-1 annotation:"---NA---") HSP 1 Score: 155.221 bits (391), Expect = 2.884e-47 Identity = 77/180 (42.78%), Postives = 118/180 (65.56%), Query Frame = 0 Query: 26 NNEATVLQEIRLNSVRMAEANLHNE--NLCFFRTMCAVGTQRTV--PIMTLAAGIVGFRKILDKVMDDIX-DSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTAT-HLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSCSYKDK 199 + E+ ++ ++R ++R+AEANL E N CF +MC VGT+ V P ++ GI + L ++++ I D + +FP+I+R ++S+ +G +TK++ +C LFPC ++T + + R+ RATC A G+LCPGVSIGCALCG+F+PGTCG QCIV G+YCGVS Y+C + K Sbjct: 61 DPESDMIPQMRRQAIRIAEANLRAEVNNNCFILSMCLVGTKTNVEVPRYSMVDGIRMYVNTLREIVEVIKNDPNLEPDSFPNIHRVLSSFNIGKTTKDMQVCSSLFPCEDSSTDETMAMIMRQPMRDGRATCKAAGALCPGVSIGCALCGIFSPGTCGTQCIVAGLYCGVSGYACQEEAK 240
BLAST of EMLSAG00000004570 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold301_size216225-snap-gene-0.15 (protein:Tk06219 transcript:maker-scaffold301_size216225-snap-gene-0.15-mRNA-1 annotation:"multispecies: serine acetyltransferase") HSP 1 Score: 88.5817 bits (218), Expect = 8.959e-22 Identity = 57/187 (30.48%), Postives = 94/187 (50.27%), Query Frame = 0 Query: 30 TVLQEIRLNSVRMAEANLHNE-NLCFFRTMCAVGTQRTVP-------------IMTLAAGIVGFRKILDKVMDDIXDSGINEYNFP--SIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAV--TVKHRNSRAT----CNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSC 194 TV R + ++AE L + + C T C VGT ++T+AAG+V + +V+ + E++ P + + V+SYE+G +T++ +C+ FPC A+ L + + N + + C A+ S+CPGVSIGC+LC +FAP TC C VG ++CG ++ C Sbjct: 50 TVRNVQRTTAAQLAEQALIRDFSTCLQLTFCIVGTNPQAQGYATHHQLSQDNHVLTMAAGVVASVETFKQVLTTV------EHSQPMTRMQQLVSSYELGRATRDAHICQSTFPCDHPASDLKIRPIGKALGGNNLKLSHLIDCKALSSVCPGVSIGCSLCAMFAPATCSSTCTVGALFCGSTAIGC 230 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004570 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004570 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 6
BLAST of EMLSAG00000004570 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000004570 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004570 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000004570 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000004570 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s238:699874..700592- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004570-687336 ID=EMLSAG00000004570-687336|Name=EMLSAG00000004570|organism=Lepeophtheirus salmonis|type=gene|length=719bp|location=Sequence derived from alignment at LSalAtl2s238:699874..700592- (Lepeophtheirus salmonis)back to top Add to Basket
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