EMLSAG00000004570, EMLSAG00000004570-687336 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004570
Unique NameEMLSAG00000004570-687336
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000004570 vs. C. finmarchicus
Match: gi|592890183|gb|GAXK01068192.1| (TSA: Calanus finmarchicus comp17106_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 88.5817 bits (218), Expect = 3.387e-20
Identity = 51/163 (31.29%), Postives = 85/163 (52.15%), Query Frame = 0
Query:   35 IRLNSVRMAEANLHNE-NLCFFRTMCAVGT-QRTVPIMTLAAGIVGFRKILDKVMDDIXDSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSCS 195
            I+  S   AE++L N  N C     C VGT +  +P  +LAA +     +++ V+     S       P++ +  +++E+G  T+ + LC ++F C   A    + A+ V        C ++G +CPG+SI C+LCG+F PG CG  C +  ++CG S Y C+
Sbjct:  125 IQQQSALTAESSLSNTMNRCLLNQFCQVGTAEGRLPEDSLAAALYQSYNVVNTVLQTSSRSN----PMPNMQKIKSAFELGQKTRKIQLCAEVFEC---ADRNADIAIPVPTSRKTVDCGSLGKVCPGLSISCSLCGMFIPGLCGAVCPMAALFCGSSGYLCA 592          
BLAST of EMLSAG00000004570 vs. C. finmarchicus
Match: gi|592890182|gb|GAXK01068193.1| (TSA: Calanus finmarchicus comp17106_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 88.5817 bits (218), Expect = 3.586e-20
Identity = 51/163 (31.29%), Postives = 85/163 (52.15%), Query Frame = 0
Query:   35 IRLNSVRMAEANLHNE-NLCFFRTMCAVGT-QRTVPIMTLAAGIVGFRKILDKVMDDIXDSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSCS 195
            I+  S   AE++L N  N C     C VGT +  +P  +LAA +     +++ V+     S       P++ +  +++E+G  T+ + LC ++F C   A    + A+ V        C ++G +CPG+SI C+LCG+F PG CG  C +  ++CG S Y C+
Sbjct:  266 IQQQSALTAESSLSNTMNRCLLNQFCQVGTAEGRLPEDSLAAALYQSYNVVNTVLQTSSRSN----PMPNMQKIKSAFELGQKTRKIQLCAEVFEC---ADRNADIAIPVPTSRKTVDCGSLGKVCPGLSISCSLCGMFIPGLCGAVCPMAALFCGSSGYLCA 733          
BLAST of EMLSAG00000004570 vs. C. finmarchicus
Match: gi|592857514|gb|GAXK01100048.1| (TSA: Calanus finmarchicus comp7306_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 71.633 bits (174), Expect = 1.519e-14
Identity = 52/173 (30.06%), Postives = 77/173 (44.51%), Query Frame = 0
Query:   31 VLQEIRLNSVRMAEANLHN---ENLCFFRTMCAVGT---QRTVPI---MTLAAGIVGFRKILDKVMDDIXDSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSC 194
            VLQE     + +AEA   +   ++ C  R +C  G     R  P    +T+   I  F   L K+ +       N  N       + + EVG +      C  L+ C   A               R TC+A G++CPG+++ C++CG+FAP  CG  C   G+YCGV+ YSC
Sbjct:  171 VLQE---QGIILAEATFDSTLGKSSCLARELCQFGAGNEARFNPFNEQITIGTAIDTFTTFLSKMKNSATRETKNIDNL------LGAVEVGKALGK-SACRSLYECATPAPK------------GRVTCDAAGNVCPGLAMSCSMCGIFAPPLCGAACTAAGLYCGVAGYSC 623          
BLAST of EMLSAG00000004570 vs. C. finmarchicus
Match: gi|592942601|gb|GAXK01015952.1| (TSA: Calanus finmarchicus comp205857_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 2.640e+0
Identity = 23/78 (29.49%), Postives = 33/78 (42.31%), Query Frame = 0
Query:  137 NEAVTVKHRNSRATC-------NAVGSLCPGVSI-------GCALCGVFAPGTCGQQCIVGGIYCGVSSYSCSYKDKE 200
            NE+  +KH+N + TC       N+ G+L   VS+        C LCG      C     +  I+ G   Y C + D E
Sbjct: 1758 NESSVLKHKNPKFTCRKCGFVANSSGTLTRHVSVVHRGIRWSCKLCGYVTTVKCSMVRHIQSIHQGW-RYQCPFCDHE 1988          
BLAST of EMLSAG00000004570 vs. C. finmarchicus
Match: gi|592875704|gb|GAXK01081873.1| (TSA: Calanus finmarchicus comp4364223_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 4.641e+0
Identity = 19/62 (30.65%), Postives = 27/62 (43.55%), Query Frame = 0
Query:   97 EYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLC 158
            E    S+ + +A    G S    D C+K F    +A   L E V+ +HR    TC+  G  C
Sbjct:  129 EKKLISLVKQIAVVGHGKSEHACDECDKTF----SAKCTLKEHVSAEHRKKSHTCDECGETC 302          
BLAST of EMLSAG00000004570 vs. C. finmarchicus
Match: gi|592918455|gb|GAXK01039920.1| (TSA: Calanus finmarchicus comp273035_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 6.769e+0
Identity = 11/23 (47.83%), Postives = 13/23 (56.52%), Query Frame = 0
Query:  160 GVSIGCALCGVFAPGTCGQQCIV 182
            G +I C LCGV  PG C   C +
Sbjct: 1035 GKAIACVLCGVLTPGLCDVACKI 1103          
BLAST of EMLSAG00000004570 vs. L. salmonis peptides
Match: EMLSAP00000004570 (pep:novel supercontig:LSalAtl2s:LSalAtl2s238:699874:700592:-1 gene:EMLSAG00000004570 transcript:EMLSAT00000004570 description:"maker-LSalAtl2s238-augustus-gene-7.20")

HSP 1 Score: 411.379 bits (1056), Expect = 2.338e-147
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
Query:    1 MISKIAIIFFGFVGLSLASFKANLANNEATVLQEIRLNSVRMAEANLHNENLCFFRTMCAVGTQRTVPIMTLAAGIVGFRKILDKVMDDIXDSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSCSYKDKED 201
            MISKIAIIFFGFVGLSLASFKANLANNEATVLQEIRLNSVRMAEANLHNENLCFFRTMCAVGTQRTVPIMTLAAGIVGFRKILDKVMDDIXDSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSCSYKDKED
Sbjct:    1 MISKIAIIFFGFVGLSLASFKANLANNEATVLQEIRLNSVRMAEANLHNENLCFFRTMCAVGTQRTVPIMTLAAGIVGFRKILDKVMDDIXDSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSCSYKDKED 201          
BLAST of EMLSAG00000004570 vs. L. salmonis peptides
Match: EMLSAP00000006295 (pep:novel supercontig:LSalAtl2s:LSalAtl2s342:191019:196022:-1 gene:EMLSAG00000006295 transcript:EMLSAT00000006295 description:"maker-LSalAtl2s342-augustus-gene-2.18")

HSP 1 Score: 93.5893 bits (231), Expect = 5.876e-22
Identity = 58/170 (34.12%), Postives = 83/170 (48.82%), Query Frame = 0
Query:   30 TVLQEIRLNSVRMAEANLH--NENLCFFRTMCAVGTQRTVPIMTLAAGIVGFRKILDKVMDDIXDSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSCSYK 197
            TVL ++R+ S  MAE  L    +  C  ++ C V     V     A        +L +++D++  SG  +  FP I   VA+Y VG  TKN  +C+ LF C +    +            R  C A  +LCPG++I C LC + +P TCG  C +  IYCG S YSC+ K
Sbjct:   72 TVLTQVRMQSAIMAEKYLRTSEDTQCTKKSFCDVAALSNV--NENAKATYSSVNVLTQMLDEV--SG-QDKEFPHISSLVAAYTVGTKTKNGTICKWLFACNKPQEII----------EGRVNCRATSALCPGIAISCGLCAIISPETCGVVCPIAAIYCGTSGYSCAKK 226          
BLAST of EMLSAG00000004570 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold301_size216225-snap-gene-0.21 (protein:Tk06224 transcript:maker-scaffold301_size216225-snap-gene-0.21-mRNA-1 annotation:"---NA---")

HSP 1 Score: 155.221 bits (391), Expect = 2.884e-47
Identity = 77/180 (42.78%), Postives = 118/180 (65.56%), Query Frame = 0
Query:   26 NNEATVLQEIRLNSVRMAEANLHNE--NLCFFRTMCAVGTQRTV--PIMTLAAGIVGFRKILDKVMDDIX-DSGINEYNFPSIYRAVASYEVGISTKNLDLCEKLFPCIQTAT-HLLNEAVTVKHRNSRATCNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSCSYKDK 199
            + E+ ++ ++R  ++R+AEANL  E  N CF  +MC VGT+  V  P  ++  GI  +   L ++++ I  D  +   +FP+I+R ++S+ +G +TK++ +C  LFPC  ++T   +   +    R+ RATC A G+LCPGVSIGCALCG+F+PGTCG QCIV G+YCGVS Y+C  + K
Sbjct:   61 DPESDMIPQMRRQAIRIAEANLRAEVNNNCFILSMCLVGTKTNVEVPRYSMVDGIRMYVNTLREIVEVIKNDPNLEPDSFPNIHRVLSSFNIGKTTKDMQVCSSLFPCEDSSTDETMAMIMRQPMRDGRATCKAAGALCPGVSIGCALCGIFSPGTCGTQCIVAGLYCGVSGYACQEEAK 240          
BLAST of EMLSAG00000004570 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold301_size216225-snap-gene-0.15 (protein:Tk06219 transcript:maker-scaffold301_size216225-snap-gene-0.15-mRNA-1 annotation:"multispecies: serine acetyltransferase")

HSP 1 Score: 88.5817 bits (218), Expect = 8.959e-22
Identity = 57/187 (30.48%), Postives = 94/187 (50.27%), Query Frame = 0
Query:   30 TVLQEIRLNSVRMAEANLHNE-NLCFFRTMCAVGTQRTVP-------------IMTLAAGIVGFRKILDKVMDDIXDSGINEYNFP--SIYRAVASYEVGISTKNLDLCEKLFPCIQTATHLLNEAV--TVKHRNSRAT----CNAVGSLCPGVSIGCALCGVFAPGTCGQQCIVGGIYCGVSSYSC 194
            TV    R  + ++AE  L  + + C   T C VGT                  ++T+AAG+V   +   +V+  +      E++ P   + + V+SYE+G +T++  +C+  FPC   A+ L    +   +   N + +    C A+ S+CPGVSIGC+LC +FAP TC   C VG ++CG ++  C
Sbjct:   50 TVRNVQRTTAAQLAEQALIRDFSTCLQLTFCIVGTNPQAQGYATHHQLSQDNHVLTMAAGVVASVETFKQVLTTV------EHSQPMTRMQQLVSSYELGRATRDAHICQSTFPCDHPASDLKIRPIGKALGGNNLKLSHLIDCKALSSVCPGVSIGCSLCAMFAPATCSSTCTVGALFCGSTAIGC 230          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004570 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004570 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592890183|gb|GAXK01068192.1|3.387e-2031.29TSA: Calanus finmarchicus comp17106_c0_seq1 transc... [more]
gi|592890182|gb|GAXK01068193.1|3.586e-2031.29TSA: Calanus finmarchicus comp17106_c1_seq1 transc... [more]
gi|592857514|gb|GAXK01100048.1|1.519e-1430.06TSA: Calanus finmarchicus comp7306_c1_seq1 transcr... [more]
gi|592942601|gb|GAXK01015952.1|2.640e+029.49TSA: Calanus finmarchicus comp205857_c0_seq1 trans... [more]
gi|592875704|gb|GAXK01081873.1|4.641e+030.65TSA: Calanus finmarchicus comp4364223_c0_seq1 tran... [more]
gi|592918455|gb|GAXK01039920.1|6.769e+047.83TSA: Calanus finmarchicus comp273035_c1_seq1 trans... [more]
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BLAST of EMLSAG00000004570 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000045702.338e-147100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s238:69987... [more]
EMLSAP000000062955.876e-2234.12pep:novel supercontig:LSalAtl2s:LSalAtl2s342:19101... [more]
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BLAST of EMLSAG00000004570 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004570 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004570 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004570 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold301_size216225-snap-gene-0.212.884e-4742.78protein:Tk06224 transcript:maker-scaffold301_size2... [more]
maker-scaffold301_size216225-snap-gene-0.158.959e-2230.48protein:Tk06219 transcript:maker-scaffold301_size2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s238supercontigLSalAtl2s238:699874..700592 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s238-augustus-gene-7.20
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004570 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004570EMLSAT00000004570-700417Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s238:699874..700592-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004570-687336 ID=EMLSAG00000004570-687336|Name=EMLSAG00000004570|organism=Lepeophtheirus salmonis|type=gene|length=719bp|location=Sequence derived from alignment at LSalAtl2s238:699874..700592- (Lepeophtheirus salmonis)
ATGATTTCTAAAATCGCCATCATTTTCTTTGGATTCGTCGGTCTGTCATT GGCATCCTTTAAGGTTTGTTCATTCTTAAAATTCAAAGGTTTTAAATATT GATTATAATATCCCCTTAGGCCAATTTGGCAAACAATGAGGCGACAGTAC TCCAAGAGATTCGACTCAATTCCGTGAGAATGGCCGAGGCCAATCTCCAT AATGAGAATTTGTGTTTCTTCCGTACAATGTGTGCTGTTGGAACACAAAG AACTGTACCAATCATGACATTGGCAGCTGGRATTGTTGGATTTAGAAAAA TCCTTGATAAAGTCATGGATGACATAARAGATTCTGGAATCAATGAGTAT AACTTCCCTTCAATTTATCGCGCTGTTGCTAGTTATGAGGTTGGGATTTC AACCAAAAATTTGGATTTATGTGAGAAATTATTTCCTTGCATTCAAACTG CCACCCACCTTTTGAATGAGGCTGTCACTGTCAAACACAGGTAAGACCGG GAATATTTACTATATATTTATGATACATGTTTTACTTATTCTTGTAGAAA TAGCCGTGCAACTTGCAATGCTGTTGGATCTTTGTGCCCTGGTGTCAGCA TTGGATGTGCTCTATGTGGTGTTTTTGCTCCTGGAACATGTGGACAACAA TGCATCGTCGGAGGAATCTATTGTGGGGTTAGCTCCTACTCTTGTTCCTA CAAGGATAAGGAAGATTAA
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