EMLSAG00000004793, EMLSAG00000004793-687559 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004793 vs. C. finmarchicus
Match: gi|592812071|gb|GAXK01142497.1| (TSA: Calanus finmarchicus comp100373_c0_seq1 transcribed RNA sequence) HSP 1 Score: 94.3597 bits (233), Expect = 1.284e-21 Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 0 Query: 112 GFHDMMNVETWICAICEEYDPNIANA---DQSTTEWIGXXCNRWYHQFCTKLKVLDKNFNCAHVNLECLPT 179 G HD+ N TW+CAIC +YDP + + D TTEWIG CNRW+H+FCT+LK +D +F+C +V+ CLP+ Sbjct: 1169 GLHDLENTTTWVCAICGQYDPILPGSSSRDGDTTEWIGCDCNRWFHKFCTRLKEVDDSFSCRNVHKTCLPS 1381
BLAST of EMLSAG00000004793 vs. C. finmarchicus
Match: gi|592893317|gb|GAXK01065058.1| (TSA: Calanus finmarchicus comp379962_c1_seq1 transcribed RNA sequence) HSP 1 Score: 61.2326 bits (147), Expect = 3.023e-10 Identity = 27/69 (39.13%), Postives = 38/69 (55.07%), Query Frame = 0 Query: 113 FHDMMNVETWICAICEEYDPNIANADQS----TTEWIGXXCNRWYHQFCTKLKVLDKNFNCAHVNLECL 177 + D E C IC YDP + + S TTEW+G C+RW+H+ CTK+K F+C V ++CL Sbjct: 3668 YQDQDTDEEVFCGICNHYDPPLNPENTSGLTYTTEWVGCDCDRWFHKPCTKMKRFTDKFSCKSVKMKCL 3874
BLAST of EMLSAG00000004793 vs. C. finmarchicus
Match: gi|592753827|gb|GAXK01200586.1| (TSA: Calanus finmarchicus comp365702_c0_seq1 transcribed RNA sequence) HSP 1 Score: 60.8474 bits (146), Expect = 3.208e-10 Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 0 Query: 120 ETWICAICE----EYDPNIANADQSTTEWIGXXCNRWYHQFCTKLKVLDKNFNCAHVNLECL 177 E C ICE DPN ++ + TTEW+G C RW+H+ CTKL + + F+C V ++C+ Sbjct: 1562 ELVTCGICELLDPPVDPNNPHSTEETTEWVGCDCYRWFHKGCTKLMKITEKFSCKSVKMKCI 1747
BLAST of EMLSAG00000004793 vs. C. finmarchicus
Match: gi|592781858|gb|GAXK01172710.1| (TSA: Calanus finmarchicus comp1250140_c0_seq1 transcribed RNA sequence) HSP 1 Score: 42.3578 bits (98), Expect = 2.549e-4 Identity = 21/62 (33.87%), Postives = 34/62 (54.84%), Query Frame = 0 Query: 117 MNVETWICAICEEYDP--NIANADQSTTEWIGXXCNRWYHQFCTKLKVLDKNFNCAHVNLEC 176 M VET C+IC DP +I+ + +W G C RW+H C ++ ++F+C + L+C Sbjct: 436 MEVET--CSICNLADPLNDISEEAECNIDWTGCDCGRWFHNKCINIQNPPEDFSCQLLKLKC 615
BLAST of EMLSAG00000004793 vs. C. finmarchicus
Match: gi|592781856|gb|GAXK01172712.1| (TSA: Calanus finmarchicus comp1250140_c0_seq3 transcribed RNA sequence) HSP 1 Score: 39.2762 bits (90), Expect = 1.056e-3 Identity = 20/62 (32.26%), Postives = 33/62 (53.23%), Query Frame = 0 Query: 117 MNVETWICAICEEYDP--NIANADQSTTEWIGXXCNRWYHQFCTKLKVLDKNFNCAHVNLEC 176 M V+T C+IC DP +I+ + +W G C +W+H C +K ++F C + L+C Sbjct: 91 MEVDT--CSICNLSDPPNDISEESEGNIDWTGCDCGQWFHNKCMNVKNPPEDFLCPLLKLKC 270
BLAST of EMLSAG00000004793 vs. C. finmarchicus
Match: gi|592781857|gb|GAXK01172711.1| (TSA: Calanus finmarchicus comp1250140_c0_seq2 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 1.475e-3 Identity = 18/61 (29.51%), Postives = 32/61 (52.46%), Query Frame = 0 Query: 118 NVETWICAICEEYDP--NIANADQSTTEWIGXXCNRWYHQFCTKLKVLDKNFNCAHVNLEC 176 ++E C+IC DP +I+ + +W G C +W+H C +K ++F C + L+C Sbjct: 226 DMEVDTCSICNLSDPPNDISEESEGNIDWTGCDCGQWFHNKCMNVKNPPEDFLCPLLKLKC 408
BLAST of EMLSAG00000004793 vs. C. finmarchicus
Match: gi|592807354|gb|GAXK01147214.1| (TSA: Calanus finmarchicus comp42845_c2_seq5 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 9.310e+0 Identity = 12/25 (48.00%), Postives = 14/25 (56.00%), Query Frame = 0 Query: 149 CNRWYHQFCTKLK----VLDKNFNC 169 C WYH FC LK D++FNC Sbjct: 1880 CELWYHLFCIGLKPHNIKEDEDFNC 1954
BLAST of EMLSAG00000004793 vs. C. finmarchicus
Match: gi|592807355|gb|GAXK01147213.1| (TSA: Calanus finmarchicus comp42845_c2_seq4 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 9.326e+0 Identity = 12/25 (48.00%), Postives = 14/25 (56.00%), Query Frame = 0 Query: 149 CNRWYHQFCTKLK----VLDKNFNC 169 C WYH FC LK D++FNC Sbjct: 1880 CELWYHLFCIGLKPHNIKEDEDFNC 1954
BLAST of EMLSAG00000004793 vs. C. finmarchicus
Match: gi|592807357|gb|GAXK01147211.1| (TSA: Calanus finmarchicus comp42845_c2_seq2 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 9.757e+0 Identity = 12/25 (48.00%), Postives = 14/25 (56.00%), Query Frame = 0 Query: 149 CNRWYHQFCTKLK----VLDKNFNC 169 C WYH FC LK D++FNC Sbjct: 4316 CELWYHLFCIGLKPHNIKEDEDFNC 4390
BLAST of EMLSAG00000004793 vs. C. finmarchicus
Match: gi|592807358|gb|GAXK01147210.1| (TSA: Calanus finmarchicus comp42845_c2_seq1 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 9.761e+0 Identity = 12/25 (48.00%), Postives = 14/25 (56.00%), Query Frame = 0 Query: 149 CNRWYHQFCTKLK----VLDKNFNC 169 C WYH FC LK D++FNC Sbjct: 4316 CELWYHLFCIGLKPHNIKEDEDFNC 4390
BLAST of EMLSAG00000004793 vs. L. salmonis peptides
Match: EMLSAP00000004793 (pep:novel supercontig:LSalAtl2s:LSalAtl2s252:407712:412742:-1 gene:EMLSAG00000004793 transcript:EMLSAT00000004793 description:"snap_masked-LSalAtl2s252-processed-gene-3.8") HSP 1 Score: 369.007 bits (946), Expect = 2.247e-131 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0 Query: 1 MLSKSNTWDLQQLVHILHIDPENVKIYLNEDALQKPQNPLGPSKKDTSVSSPRISCKRRISLDNTSTHSLPPTKVIIRGQARTRGRPTRTGGLTRTSXMANSSESEATKPTGFHDMMNVETWICAICEEYDPNIANADQSTTEWIGXXCNRWYHQFCTKLKVLDKNFNCAHVNLECLPT 179 MLSKSNTWDLQQLVHILHIDPENVKIYLNEDALQKPQNPLGPSKKDTSVSSPRISCKRRISLDNTSTHSLPPTKVIIRGQARTRGRPTRTGGLTRTSXMANSSESEATKPTGFHDMMNVETWICAICEEYDPNIANADQSTTEWIGXXCNRWYHQFCTKLKVLDKNFNCAHVNLECLPT Sbjct: 1 MLSKSNTWDLQQLVHILHIDPENVKIYLNEDALQKPQNPLGPSKKDTSVSSPRISCKRRISLDNTSTHSLPPTKVIIRGQARTRGRPTRTGGLTRTSXMANSSESEATKPTGFHDMMNVETWICAICEEYDPNIANADQSTTEWIGXXCNRWYHQFCTKLKVLDKNFNCAHVNLECLPT 179
BLAST of EMLSAG00000004793 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold570_size134912-snap-gene-0.10 (protein:Tk08980 transcript:maker-scaffold570_size134912-snap-gene-0.10-mRNA-1 annotation:"conserved hypothetical protein") HSP 1 Score: 121.709 bits (304), Expect = 3.344e-34 Identity = 77/210 (36.67%), Postives = 114/210 (54.29%), Query Frame = 0 Query: 1 MLSKSNTWDLQQLVHILHIDPENVKIYL---NEDALQKPQNPLGPSKKDTSVSSP-----------------RISCKRRI---SLDNTSTHSLPPT----KVIIRGQARTRGRPTRTGGLTRTSXMANSSES-EATKPTGFHDMMNVETWICAICEEYDPNIA---NADQST-TEWIGXXCNRWYHQFCTKLKVLDKNFNCAHVNLECLP 178 +L++ +T+DLQQLVHIL IDPENV+I + + Q Q + K V+SP R + KR+ ++ TST + PP K+ + + T G+ R+ R + + S + P+GFHDM NV TW+CAIC+++DP + N Q+ TEW+G C+RWYH+ CTKL +D +F+C V+L CLP Sbjct: 99 VLNRKSTYDLQQLVHILQIDPENVRIDTPSEDPEQAQLVQAKITALKGGVQVASPPQPESDHPAEGHTTRPQRTAAKRQAPPEAVPPTSTPNGPPKAKELKLTLPNRV-TNGKKLRSHRTNRRPDLEDGSGTISVDTPSGFHDMSNVHTWVCAICKQFDPILPPGMNPSQAPETEWVGCDCDRWYHKRCTKLSSIDDSFSCVQVSLTCLP 307 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004793 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004793 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 10
BLAST of EMLSAG00000004793 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000004793 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004793 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000004793 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000004793 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s252:407712..412742- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004793-687559 ID=EMLSAG00000004793-687559|Name=EMLSAG00000004793|organism=Lepeophtheirus salmonis|type=gene|length=5031bp|location=Sequence derived from alignment at LSalAtl2s252:407712..412742- (Lepeophtheirus salmonis)back to top Add to Basket
|