EMLSAG00000005097, EMLSAG00000005097-687863 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000005097
Unique NameEMLSAG00000005097-687863
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000005097 vs. C. finmarchicus
Match: gi|592772307|gb|GAXK01182261.1| (TSA: Calanus finmarchicus comp2563967_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 5.089e-1
Identity = 20/60 (33.33%), Postives = 32/60 (53.33%), Query Frame = 0 
Query:   20 LTSPNHFNVVDHGRSLLEGLGVPRHEYRIKKLQATKLVI-------KPLHNLLQGREERF 72
            L S +HF++VD    LLEG   P   Y +K +Q ++++        +P  +LL  RE +F
Sbjct:  496 LLSADHFSIVDETGPLLEGW--PFWNYLLKLMQFSEVIT*T*TIFCQPGAHLLLTRERQF 669
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BLAST of EMLSAG00000005097 vs. C. finmarchicus
Match: gi|592927828|gb|GAXK01030653.1| (TSA: Calanus finmarchicus comp117484_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.426e+0
Identity = 12/34 (35.29%), Postives = 16/34 (47.06%), Query Frame = 0 
Query:    6 KYKLEVCVDSRFFRLTSPNHFNVVDHGRSLLEGL 39
            +YK   C+DS F+  T    F +  H R    GL
Sbjct:  788 QYKTNFCIDSNFWIFTKSESFAISSHARRFTIGL 889
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BLAST of EMLSAG00000005097 vs. C. finmarchicus
Match: gi|592927829|gb|GAXK01030652.1| (TSA: Calanus finmarchicus comp117484_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.427e+0
Identity = 12/34 (35.29%), Postives = 16/34 (47.06%), Query Frame = 0 
Query:    6 KYKLEVCVDSRFFRLTSPNHFNVVDHGRSLLEGL 39
            +YK   C+DS F+  T    F +  H R    GL
Sbjct:  807 QYKTNFCIDSNFWIFTKSESFAISSHARRFTIGL 908
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BLAST of EMLSAG00000005097 vs. C. finmarchicus
Match: gi|592750665|gb|GAXK01203748.1| (TSA: Calanus finmarchicus comp385039_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.292e+0
Identity = 15/33 (45.45%), Postives = 19/33 (57.58%), Query Frame = 0 
Query:   16 RFFRLTSPNHFNVVDHGRSLLEGLGVPRHEYRI 48
            RFFR   P+HF  + HGR +  G  + R E RI
Sbjct:  359 RFFR---PDHFVPLGHGRRVCMGEPLARAELRI 448
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BLAST of EMLSAG00000005097 vs. L. salmonis peptides
Match: EMLSAP00000005097 (pep:novel supercontig:LSalAtl2s:LSalAtl2s26:251340:252179:-1 gene:EMLSAG00000005097 transcript:EMLSAT00000005097 description:"snap_masked-LSalAtl2s26-processed-gene-2.4")

HSP 1 Score: 162.54 bits (410), Expect = 2.481e-53
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 
Query:    1 MFCSYKYKLEVCVDSRFFRLTSPNHFNVVDHGRSLLEGLGVPRHEYRIKKLQATKLVIKPLHNLLQGREERFENYKIS 78
            MFCSYKYKLEVCVDSRFFRLTSPNHFNVVDHGRSLLEGLGVPRHEYRIKKLQATKLVIKPLHNLLQGREERFENYKIS
Sbjct:    1 MFCSYKYKLEVCVDSRFFRLTSPNHFNVVDHGRSLLEGLGVPRHEYRIKKLQATKLVIKPLHNLLQGREERFENYKIS 78
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BLAST of EMLSAG00000005097 vs. L. salmonis peptides
Match: EMLSAP00000005427 (pep:novel supercontig:LSalAtl2s:LSalAtl2s292:432709:433506:1 gene:EMLSAG00000005427 transcript:EMLSAT00000005427 description:"maker-LSalAtl2s292-augustus-gene-4.24")

HSP 1 Score: 48.9062 bits (115), Expect = 4.036e-9
Identity = 28/54 (51.85%), Postives = 32/54 (59.26%), Query Frame = 0 
Query:   26 FNVVDHGRSLLEGLGVPRHEYRIKKLQATKLVIK-PLHNLLQGREERFENYKIS 78
             NVVD  R LLEG GVPRH YRIK L  TKL  K P +   +  +  +E  KIS
Sbjct:   28 INVVDQNRVLLEGPGVPRHAYRIKNLHLTKLATKFPFNARSKVVKSAWEADKIS 81
The following BLAST results are available for this feature:
BLAST of EMLSAG00000005097 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005097 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592772307|gb|GAXK01182261.1|5.089e-133.33TSA: Calanus finmarchicus comp2563967_c0_seq1 tran... [more]
gi|592927828|gb|GAXK01030653.1|1.426e+035.29TSA: Calanus finmarchicus comp117484_c0_seq2 trans... [more]
gi|592927829|gb|GAXK01030652.1|1.427e+035.29TSA: Calanus finmarchicus comp117484_c0_seq1 trans... [more]
gi|592750665|gb|GAXK01203748.1|2.292e+045.45TSA: Calanus finmarchicus comp385039_c0_seq4 trans... [more]
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BLAST of EMLSAG00000005097 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000050972.481e-53100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s26:251340... [more]
EMLSAP000000054274.036e-951.85pep:novel supercontig:LSalAtl2s:LSalAtl2s292:43270... [more]
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BLAST of EMLSAG00000005097 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005097 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005097 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005097 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s26supercontigLSalAtl2s26:251340..252179 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s26-processed-gene-2.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000005097 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000005097EMLSAT00000005097-700944Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s26:251340..252179-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000005097-687863 ID=EMLSAG00000005097-687863|Name=EMLSAG00000005097|organism=Lepeophtheirus salmonis|type=gene|length=840bp|location=Sequence derived from alignment at LSalAtl2s26:251340..252179- (Lepeophtheirus salmonis)
ATGTTTTGTTCCTACAAGTACAAATTAGAGGTGTAATTTAGTTTATTAAC
ATTTTACATCCTTCAATACTCTGATTTCACCTTATTAACGTAACAATAAG
GAACTCTTTTTATCTTTTAATTTACTATAATTGACCAATCTCCATAAACC
CCTCTTCATCCCTTCATAATTAAATTAAATTTATTCCTTAAAGACATTTT
AAAAGGTACGCACTTATACGTAGGTTGCTACTAATATTTTTAGTCTCAAA
TAAACTATGCGTCGTAGGATCCATCTGTTTTAATCTGTTGATGGCTTGGG
ATTTTTATATAACAATTTTATTGATTAACATTTTGTTATTTACACGTGAT
TTGAGTATTTTAGAGGGATCAGAAATATTCTTTCTATCATACAACCGATG
GATCATACTACGCATATTTTCTTTAAAGCCAGAAATATAAGTAGCAACCT
ACTTATATACCTTTATTTTCACCTTTTTAAACGCAATGTATCAAGTAAAA
CATATTTTTTAAATTGGATTATTTTCTCTCAAAAAAACAATATTAAGAAT
TTCTCTATCTTCCTTCTCTTATTTTCTTCTATATTTCCTTCCAACACCCC
GTCTCGATGCTATTCTAAAGATTCATAGAAATAAGATGTGTTGACTCAAG
ATTCTTTCGCCTGACAAGTCCCAATCATTTTAACGTTGTTGACCACGGAA
GATCTCTCCTTGAGGGCCTTGGAGTTCCTCGGCATGAATACCGGATCAAG
AAACTTCAGGCGACTAAGCTTGTCATCAAGCCCCTTCATAATTTGCTGCA
AGGCCGTGAAGAGCGCTTTGAAAACTATAAGATCTCTTAG
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