EMLSAG00000005253, EMLSAG00000005253-688019 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000005253 vs. C. finmarchicus
Match: gi|592827153|gb|GAXK01129376.1| (TSA: Calanus finmarchicus comp236765_c0_seq3 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 2.751e+0 Identity = 24/83 (28.92%), Postives = 43/83 (51.81%), Query Frame = 0 Query: 153 NSKNRKSNSYDGQVHILKYIITHGKYNSLKDINTWRRMKVGGVCSGLRTAISLKEHFRKQILPHINIKTYPQFSEEDLNKILR 235 NS+ ++ S + ++ Y + +G Y+ W++M+ +C G RT SL+E F K I N+K + S++ L K+ R Sbjct: 333 NSRFKQPYSRGEEEAVVNYFLRNGGYSVRGGNAVWQKMEEDWICPG-RTWQSLRERFDKNI--EKNLKQF-GVSKQQLEKVDR 569
BLAST of EMLSAG00000005253 vs. C. finmarchicus
Match: gi|592827156|gb|GAXK01129374.1| (TSA: Calanus finmarchicus comp236765_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 2.853e+0 Identity = 24/83 (28.92%), Postives = 43/83 (51.81%), Query Frame = 0 Query: 153 NSKNRKSNSYDGQVHILKYIITHGKYNSLKDINTWRRMKVGGVCSGLRTAISLKEHFRKQILPHINIKTYPQFSEEDLNKILR 235 NS+ ++ S + ++ Y + +G Y+ W++M+ +C G RT SL+E F K I N+K + S++ L K+ R Sbjct: 333 NSRFKQPYSRGEEEAVVNYFLRNGGYSVRGGNAVWQKMEEDWICPG-RTWQSLRERFDKNI--EKNLKQF-GVSKQQLEKVDR 569
BLAST of EMLSAG00000005253 vs. C. finmarchicus
Match: gi|592761786|gb|GAXK01192627.1| (TSA: Calanus finmarchicus comp473273_c4_seq3 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 4.374e+0 Identity = 21/82 (25.61%), Postives = 41/82 (50.00%), Query Frame = 0 Query: 106 VSLFEEYDPYDILI--GEKTWIDLKKRKNIEEEYMELDNFDKALLTPSANSKNRKSNSYDGQVHILKYIITHGKYNSLKDIN 185 + + Y+P D ++ G+ I L+++++ E NF K L+ PSA + + Y G + ++ I T G+ +L +N Sbjct: 47 IDVHHRYNPRDAIVYKGDGEVIQLREKEHFVAVMNE--NFTKTLIGPSAIVTDEEGVIYVGDTNYIRKIDTFGRVTNLLKLN 286
BLAST of EMLSAG00000005253 vs. C. finmarchicus
Match: gi|592802628|gb|GAXK01151940.1| (TSA: Calanus finmarchicus comp931942_c0_seq18 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 5.884e+0 Identity = 45/142 (31.69%), Postives = 62/142 (43.66%), Query Frame = 0 Query: 116 DILIGEKTWIDLKKRKNIEEE-----YMELDNFDKALLTPSANSKNRKSNSYDGQVHILKYIITHGKYNSLKDINTWRRMKVGGVCSGL---RTAIS--LKEHF----RKQILPHINIKTYPQFS----EEDLNK-ILRGWK 238 D I EK+ ++KRK +EEE +E+ D+ +LTP ++ S S D V + + + + D CS L RT IS L EH K LP IN KT Q +DLNK I++ WK Sbjct: 159 DCQIVEKSVQSMRKRKLVEEEEPTNQCVEIYEVDEQILTPQSSGNPNNSKSEDS-VSYFYFCLDCEEQSYGHDTE----------CSHLNHPRTPISINLGEHINTTNHKNFLP-INDKTKVQMKNISFSQDLNKLIIKKWK 548
BLAST of EMLSAG00000005253 vs. C. finmarchicus
Match: gi|592802629|gb|GAXK01151939.1| (TSA: Calanus finmarchicus comp931942_c0_seq17 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 5.958e+0 Identity = 45/142 (31.69%), Postives = 62/142 (43.66%), Query Frame = 0 Query: 116 DILIGEKTWIDLKKRKNIEEE-----YMELDNFDKALLTPSANSKNRKSNSYDGQVHILKYIITHGKYNSLKDINTWRRMKVGGVCSGL---RTAIS--LKEHF----RKQILPHINIKTYPQFS----EEDLNK-ILRGWK 238 D I EK+ ++KRK +EEE +E+ D+ +LTP ++ S S D V + + + + D CS L RT IS L EH K LP IN KT Q +DLNK I++ WK Sbjct: 159 DCQIVEKSVQSMRKRKLVEEEEPTNQCVEIYEVDEQILTPQSSGNPNNSKSEDS-VSYFYFCLDCEEQSYGHDTE----------CSHLNHPRTPISINLGEHINTTNHKNFLP-INDKTKVQMKNISFSQDLNKLIIKKWK 548
BLAST of EMLSAG00000005253 vs. L. salmonis peptides
Match: EMLSAP00000005253 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2800:1463:11742:1 gene:EMLSAG00000005253 transcript:EMLSAT00000005253 description:"maker-LSalAtl2s2800-snap-gene-0.6") HSP 1 Score: 717.227 bits (1850), Expect = 0.000e+0 Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 0 Query: 1 MASKNTLFHDEYAPFSLFTHPSDASPIVFTMNEGPEYYRLQEMIEKGGGLLEKASKFDETHKRIRIHDKKMINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMELDNFDKALLTPSANSKNRKSNSYDGQVHILKYIITHGKYNSLKDINTWRRMKVGGVCSGLRTAISLKEHFRKQILPHINIKTYPQFSEEDLNKILRGWKGSKTSFNVEVLERSSRLKQNVPCSDDAAMHKQANVKIENSVGPLQKSSRKLINKDKTHFDESFGIINKKEEVTAMPSYKRIKICNLNKLEASSTPIXXXISRSQYSMVIPN 349 MASKNTLFHDEYAPFSLFTHPSDASPIVFTMNEGPEYYRLQEMIEKGGGLLEKASKFDETHKRIRIHDKKMINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMELDNFDKALLTPSANSKNRKSNSYDGQVHILKYIITHGKYNSLKDINTWRRMKVGGVCSGLRTAISLKEHFRKQILPHINIKTYPQFSEEDLNKILRGWKGSKTSFNVEVLERSSRLKQNVPCSDDAAMHKQANVKIENSVGPLQKSSRKLINKDKTHFDESFGIINKKEEVTAMPSYKRIKICNLNKLEASSTPIXXXISRSQYSMVIPN Sbjct: 1 MASKNTLFHDEYAPFSLFTHPSDASPIVFTMNEGPEYYRLQEMIEKGGGLLEKASKFDETHKRIRIHDKKMINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMELDNFDKALLTPSANSKNRKSNSYDGQVHILKYIITHGKYNSLKDINTWRRMKVGGVCSGLRTAISLKEHFRKQILPHINIKTYPQFSEEDLNKILRGWKGSKTSFNVEVLERSSRLKQNVPCSDDAAMHKQANVKIENSVGPLQKSSRKLINKDKTHFDESFGIINKKEEVTAMPSYKRIKICNLNKLEASSTPIXXXISRSQYSMVIPN 349
BLAST of EMLSAG00000005253 vs. L. salmonis peptides
Match: EMLSAP00000005371 (pep:novel supercontig:LSalAtl2s:LSalAtl2s28:125235:128394:-1 gene:EMLSAG00000005371 transcript:EMLSAT00000005371 description:"maker-LSalAtl2s28-augustus-gene-1.51") HSP 1 Score: 511.531 bits (1316), Expect = 6.133e-173 Identity = 252/341 (73.90%), Postives = 285/341 (83.58%), Query Frame = 0 Query: 1 MASKNTLFHDEYAPFSLFTHPSDASPIVFTMNEGPEYYRLQEMIEKGGGLLEKASKFDETHKRIRIHDKKMINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMELDNFDKALLTPSANSKNRKSN---SYDGQVHILKYIITHGKYNSLKDINTWRRMKVGGVCSGLRTAISLKEHFRKQILPHINIKTYPQFSEEDLNKILRGWKGSKT----SFNVEVLERSSRLKQNVPCSDDAAMHKQANVKIENSVGPLQKSSRKLINKDKTHFDESFGIINKKEEVTAMPSYKRIKICNLNKLEASSTPI 334 M S TLFH+ YAPF+LFTHPSDASPIVF MNEGPEY+R+++MIE GGG+LEKA KFD THKRIRIHDKKMI LEK+VD FDMTYILDCVKENNLR DL NYRLG+SLFEEYDPYDILIGEKTW+D+KK +I EE +LDNFDKA+LTPSA+SKNRK N S+D QV ILK+II+HGK+N LKDINTWR M+ GVCSGLR A SLKEHFRKQILP I++KTYPQFSEEDLNKILRGWKGSK SF VEVLERSS K++VPC++DAA H+ ANVK ENSV L+KS RKLI+ DKT DESF NK+EE PS KRIK+C+LNK +ASSTPI Sbjct: 1 MTSMETLFHEGYAPFTLFTHPSDASPIVFCMNEGPEYFRIRKMIESGGGVLEKARKFDGTHKRIRIHDKKMIALEKEVDIFDMTYILDCVKENNLRTDLGNYRLGISLFEEYDPYDILIGEKTWMDIKKLNDIGEECSQLDNFDKAVLTPSASSKNRKINRPYSHDEQVDILKFIISHGKHNKLKDINTWREMEADGVCSGLRXATSLKEHFRKQILPRIHVKTYPQFSEEDLNKILRGWKGSKAFVPPSFKVEVLERSSTPKKSVPCNNDAANHRXANVKSENSVRALRKSPRKLIHSDKTRIDESFDTNNKEEEEPTNPSNKRIKLCSLNKPKASSTPI 341
BLAST of EMLSAG00000005253 vs. L. salmonis peptides
Match: EMLSAP00000000138 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1021:425:1572:-1 gene:EMLSAG00000000138 transcript:EMLSAT00000000138 description:"maker-LSalAtl2s1021-snap-gene-0.40") HSP 1 Score: 185.267 bits (469), Expect = 5.280e-57 Identity = 90/102 (88.24%), Postives = 95/102 (93.14%), Query Frame = 0 Query: 71 MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMELDNFDKALLTPSANSKNRKSNS--YDGQVHILK 170 MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYME+DNFDKALLTPSANSKNRK+ + + Q +LK Sbjct: 1 MINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYDILIGEKTWIDLKKRKNIEEEYMEIDNFDKALLTPSANSKNRKNCNTLWLSQTDVLK 102
BLAST of EMLSAG00000005253 vs. nr
Match: gi|1067073071|ref|XP_018020006.1| (PREDICTED: uncharacterized protein LOC108676446 [Hyalella azteca]) HSP 1 Score: 64.3142 bits (155), Expect = 1.280e-7 Identity = 55/210 (26.19%), Postives = 93/210 (44.29%), Query Frame = 0 Query: 26 PIVFTMNEGPEYYRLQEMIEKGGGLLEKASKFDETHKRIRIHDKKMINLEKDVDNFDMTYILDCVKENNLRNDLCNYRLGVSLFEEYDPYD------ILIGEKTWID-------LKKRKNIEEEYMELDNFDKALLTPSANSKN-------RKSNSYDGQVHILKYIITHGKYNSLKDINTWRRMKVGGVCSGLRTAISLKEHFRKQILP 215 P F+M + PE R++ +IE GG++ S + + I D+ I+ F YI DCV ++ N L +YR+ ++ PYD +++GE TW + + + + + NSK R+ S + + +I+K+I+ + ++ W M VC G RT SLKEHF+K+I+P Sbjct: 19 PFAFSMYDCPEKPRIKALIEGHGGVM-MPSPYGPHTIHLGIPDRITISQRP---TFSSRYIEDCVAIDDFLN-LKDYRI-----DQGPPYDAQKMLRVMLGEMTWEEVIPIQCCIPPPPPRPDRSSSSSSSSDDESSSVNNSKQVKVVFSKRRDYSNEDRENIVKFILHNDLAEAVHGRKMWENMAAAKVCRGRRTWHSLKEHFKKKIIP 218 The following BLAST results are available for this feature:
BLAST of EMLSAG00000005253 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000005253 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000005253 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000005253 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000005253 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000005253 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000005253 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s2800:1463..11742+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000005253-688019 ID=EMLSAG00000005253-688019|Name=EMLSAG00000005253|organism=Lepeophtheirus salmonis|type=gene|length=10280bp|location=Sequence derived from alignment at LSalAtl2s2800:1463..11742+ (Lepeophtheirus salmonis)back to top Add to Basket
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