EMLSAG00000006271, EMLSAG00000006271-689037 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006271
Unique NameEMLSAG00000006271-689037
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000006271 vs. C. finmarchicus
Match: gi|592810239|gb|GAXK01144329.1| (TSA: Calanus finmarchicus comp367638_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.310e+0
Identity = 13/28 (46.43%), Postives = 18/28 (64.29%), Query Frame = 0 
Query:   25 VSKQPTRMVCRHALNNYYEEYEKKNIRN 52
            + K PT  + R A   YY+++EKKNI N
Sbjct:  931 LEKHPTAQL-RQAGTGYYKKFEKKNIGN 1011
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BLAST of EMLSAG00000006271 vs. C. finmarchicus
Match: gi|592810240|gb|GAXK01144328.1| (TSA: Calanus finmarchicus comp367638_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.313e+0
Identity = 13/28 (46.43%), Postives = 18/28 (64.29%), Query Frame = 0 
Query:   25 VSKQPTRMVCRHALNNYYEEYEKKNIRN 52
            + K PT  + R A   YY+++EKKNI N
Sbjct:  931 LEKHPTAQL-RQAGTGYYKKFEKKNIGN 1011
[Close]
BLAST of EMLSAG00000006271 vs. C. finmarchicus
Match: gi|592902403|gb|GAXK01055972.1| (TSA: Calanus finmarchicus comp866169_c0_seq16 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.290e+0
Identity = 16/40 (40.00%), Postives = 22/40 (55.00%), Query Frame = 0 
Query:   14 GKIKVVRSSMQVSKQPTRMVCRHALNNYYEEYE--KKNIR 51
            G+     SS QVS+ PT +     LNN + EY+  K+N R
Sbjct:  156 GEGVAPPSSPQVSQTPTPVTSPGYLNNQWNEYQGSKENTR 275
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BLAST of EMLSAG00000006271 vs. C. finmarchicus
Match: gi|592902404|gb|GAXK01055971.1| (TSA: Calanus finmarchicus comp866169_c0_seq15 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.789e+0
Identity = 16/40 (40.00%), Postives = 22/40 (55.00%), Query Frame = 0 
Query:   14 GKIKVVRSSMQVSKQPTRMVCRHALNNYYEEYE--KKNIR 51
            G+     SS QVS+ PT +     LNN + EY+  K+N R
Sbjct:  245 GEGVAPPSSPQVSQTPTPVTSPGYLNNQWNEYQGSKENTR 364
[Close]
BLAST of EMLSAG00000006271 vs. C. finmarchicus
Match: gi|592902411|gb|GAXK01055964.1| (TSA: Calanus finmarchicus comp866169_c0_seq8 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.332e+0
Identity = 16/40 (40.00%), Postives = 22/40 (55.00%), Query Frame = 0 
Query:   14 GKIKVVRSSMQVSKQPTRMVCRHALNNYYEEYE--KKNIR 51
            G+     SS QVS+ PT +     LNN + EY+  K+N R
Sbjct: 2314 GEGVAPPSSPQVSQTPTPVTSPGYLNNQWNEYQGSKENTR 2433
[Close]
BLAST of EMLSAG00000006271 vs. C. finmarchicus
Match: gi|592902412|gb|GAXK01055963.1| (TSA: Calanus finmarchicus comp866169_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.364e+0
Identity = 16/40 (40.00%), Postives = 22/40 (55.00%), Query Frame = 0 
Query:   14 GKIKVVRSSMQVSKQPTRMVCRHALNNYYEEYE--KKNIR 51
            G+     SS QVS+ PT +     LNN + EY+  K+N R
Sbjct: 2917 GEGVAPPSSPQVSQTPTPVTSPGYLNNQWNEYQGSKENTR 3036
[Close]
BLAST of EMLSAG00000006271 vs. C. finmarchicus
Match: gi|592902414|gb|GAXK01055961.1| (TSA: Calanus finmarchicus comp866169_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.395e+0
Identity = 16/40 (40.00%), Postives = 22/40 (55.00%), Query Frame = 0 
Query:   14 GKIKVVRSSMQVSKQPTRMVCRHALNNYYEEYE--KKNIR 51
            G+     SS QVS+ PT +     LNN + EY+  K+N R
Sbjct: 3835 GEGVAPPSSPQVSQTPTPVTSPGYLNNQWNEYQGSKENTR 3954
[Close]
BLAST of EMLSAG00000006271 vs. C. finmarchicus
Match: gi|592902417|gb|GAXK01055958.1| (TSA: Calanus finmarchicus comp866169_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.415e+0
Identity = 16/40 (40.00%), Postives = 22/40 (55.00%), Query Frame = 0 
Query:   14 GKIKVVRSSMQVSKQPTRMVCRHALNNYYEEYE--KKNIR 51
            G+     SS QVS+ PT +     LNN + EY+  K+N R
Sbjct: 4708 GEGVAPPSSPQVSQTPTPVTSPGYLNNQWNEYQGSKENTR 4827
[Close]
BLAST of EMLSAG00000006271 vs. C. finmarchicus
Match: gi|592902418|gb|GAXK01055957.1| (TSA: Calanus finmarchicus comp866169_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.424e+0
Identity = 16/40 (40.00%), Postives = 22/40 (55.00%), Query Frame = 0 
Query:   14 GKIKVVRSSMQVSKQPTRMVCRHALNNYYEEYE--KKNIR 51
            G+     SS QVS+ PT +     LNN + EY+  K+N R
Sbjct: 5217 GEGVAPPSSPQVSQTPTPVTSPGYLNNQWNEYQGSKENTR 5336
[Close]
BLAST of EMLSAG00000006271 vs. C. finmarchicus
Match: gi|592900791|gb|GAXK01057584.1| (TSA: Calanus finmarchicus comp4925095_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 8.419e+0
Identity = 17/61 (27.87%), Postives = 28/61 (45.90%), Query Frame = 0 
Query:    8 RNSKEAGKIKVVRSSM------QVSKQPTRMVCRHALNNYYEEYEKKNIRNTDANLRQCQN 62
            RN K AG  + V  +         +   +     + L++Y+++ E KNI+  DAN    QN
Sbjct:  186 RNHKVAGNYENVNQTFDNREE*HFAIADSFSAFSYMLDDYFDDREIKNIKYEDANSSHSQN 368
[Close]
BLAST of EMLSAG00000006271 vs. L. salmonis peptides
Match: EMLSAP00000006271 (pep:novel supercontig:LSalAtl2s:LSalAtl2s341:659091:663439:-1 gene:EMLSAG00000006271 transcript:EMLSAT00000006271 description:"snap_masked-LSalAtl2s341-processed-gene-6.5")

HSP 1 Score: 140.584 bits (353), Expect = 7.012e-45
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 
Query:    1 MSHEVVERNSKEAGKIKVVRSSMQVSKQPTRMVCRHALNNYYEEYEKKNIRNTDANLRQCQNDSRLNR 68
            MSHEVVERNSKEAGKIKVVRSSMQVSKQPTRMVCRHALNNYYEEYEKKNIRNTDANLRQCQNDSRLNR
Sbjct:    1 MSHEVVERNSKEAGKIKVVRSSMQVSKQPTRMVCRHALNNYYEEYEKKNIRNTDANLRQCQNDSRLNR 68
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006271 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006271 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 10
Match NameE-valueIdentityDescription
gi|592810239|gb|GAXK01144329.1|2.310e+046.43TSA: Calanus finmarchicus comp367638_c0_seq2 trans... [more]
gi|592810240|gb|GAXK01144328.1|2.313e+046.43TSA: Calanus finmarchicus comp367638_c0_seq1 trans... [more]
gi|592902403|gb|GAXK01055972.1|3.290e+040.00TSA: Calanus finmarchicus comp866169_c0_seq16 tran... [more]
gi|592902404|gb|GAXK01055971.1|3.789e+040.00TSA: Calanus finmarchicus comp866169_c0_seq15 tran... [more]
gi|592902411|gb|GAXK01055964.1|4.332e+040.00TSA: Calanus finmarchicus comp866169_c0_seq8 trans... [more]
gi|592902412|gb|GAXK01055963.1|4.364e+040.00TSA: Calanus finmarchicus comp866169_c0_seq7 trans... [more]
gi|592902414|gb|GAXK01055961.1|4.395e+040.00TSA: Calanus finmarchicus comp866169_c0_seq5 trans... [more]
gi|592902417|gb|GAXK01055958.1|4.415e+040.00TSA: Calanus finmarchicus comp866169_c0_seq2 trans... [more]
gi|592902418|gb|GAXK01055957.1|4.424e+040.00TSA: Calanus finmarchicus comp866169_c0_seq1 trans... [more]
gi|592900791|gb|GAXK01057584.1|8.419e+027.87TSA: Calanus finmarchicus comp4925095_c0_seq1 tran... [more]
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BLAST of EMLSAG00000006271 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000062717.012e-45100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s341:65909... [more]
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BLAST of EMLSAG00000006271 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006271 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006271 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006271 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s341supercontigLSalAtl2s341:659091..663439 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s341-processed-gene-6.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006271 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006271EMLSAT00000006271-702118Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s341:659091..663439-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006271-689037 ID=EMLSAG00000006271-689037|Name=EMLSAG00000006271|organism=Lepeophtheirus salmonis|type=gene|length=4349bp|location=Sequence derived from alignment at LSalAtl2s341:659091..663439- (Lepeophtheirus salmonis)
ATGTCACATGAAGTTGTTGAACGTAATTTTTCGACGAAAAGAAACCTGGA
AAATCTTTCAGCCATTACTAAGTTATCCTCAATAATTAAAAAAGTCCATA
GATACACATAGGATAGAAAACAATGCATTTCTTCATTCGTGAATGATTTT
GAAGGCCGAAGTTGTTGACATTCATTGCAGTTTTCCACCATCTCATTAGA
CATACCTGACCAAAAGTACAGTTGACTGGCAAGTTTTCTTGTGCGACTAA
CAGCTGTATGTCCAGCATTTAATTTTTTATATTTCTTAGGGATAATAATT
CTGTCATCGTATACGAGTAGACCATTAAAATAAGTTATATTCTCCCGAAT
TGATAATAGTTGTCGAGCAGGATGTCTTTTTGGATACTAGGCAACTTCCT
ATAAAACATATTCGTATAAGGACATTTCGTATAAAAACAAATTTGTATAA
AACCATTTGGCATAAATTTATGAGGAAACAGGGCATAGACTTTATTAATT
GTCCTTTTATAGCCTGAATTTTGGGGGTATTTTCGGGTACCAATGATACT
TAAAGAAACTACTAAGAGTCCCTAACAGCCACCCAATTGTACCCCGAATG
TTTGAGGTATTTTCAGGTKCCGCTGGGTCCCAAAACGGGATACKCCCCKC
CTCCGATACTTGAAGAAACTACTAAGATCCCCTCACAGTCCCCCGAATCG
TACCCCGATTATATTAGAGGAATATATACCAGATTATAATTTTAAGCCAA
TAAGAACCCGAAAACCCCACCAACCTTCGGGGTGCAATGGGAAGGTTGTG
AGGATCAGCGACTCTCTTTATCCTAACACCTTTTTCAGAGAAGGAAAATA
TTTGAACTATTCTGTCAGAATGAATGTTTTAATGTCTACAACATTCATTG
CTTTCATGCTTTAACAAGTTCGAAACAAAATAAAGTGGTATTTGCTTAAA
TAGTGTTACATGATGAGGGATGAATGAAAAAAAAAAAAAAAAATACAAGT
TTAAATATACGTAAAATTGCTATCTAGGTAAAATCATTCTTTGAGGCTTA
TAGAAAAAAATTGATATACAATACCTCTAATAGGTATGTAAACATATTTA
AATCCATTTAGTCACACCTCATTGATTTCAACAAAATACTATCATAACAT
TATTTATAACTAATGGTTTAGTATGAGTTACTTGACAATTAAACTACGTT
TTGTAGTTACATATTTTTGATTTCTTTGTTGAAATCCCGTTAGTTTTGAG
GATTTCTAAGAACTTTTTTAGTATCGAGTTTGAGTATTTACATATTTAAA
TATGTAAGTATTGAATAGCTTATACTTAATTTAATCCTTGAAAATACAGT
TAAGCAAATGAACAGGTAAAGTGCCTACTTATTATAAGGCATGATCATAC
TAACAAACAATTCAAAGCCGCAAGATGGCGTAGTGATTTGGAGTCAAATA
AACAAACAAATAAGTAAAACAAATCTCATACTTAGCGATGAAAATCGTGT
GTATTTTGGGGATGTTAAAAAAGAAACCGAAATTAACATGGTACCCCTGA
CAATTTGAAGAATGTTATGGAGAAGGCAGCCTAGCTGTCATGACATTCCA
TTATATCAGCTGTGACAAGGGATGAGAGGGAAAGGAAATACACAAGGACA
TTGCCAAGAAGTACTCCGACGTCGATCTTCATTTCTACTAGGACTCCTTC
TACCTTATATTATAGAAAAATATTCAATGTTGAATAAAAAAAAAGGGTAT
GTTTAAAAAATATGCATCCCCAAGGATTTATGTTCCATTTTGAATTTTTT
AAGTGATCCCATTTTGAAATATTAAAATTATCTACTCAACGTGAATGGAT
CCCTTTATTGTTTCGATCCTGGTATATCATTCCCGAGGAAGGAGTCCACT
CTACTCCCTTATGAGGTTTGGTAGTTTTCATCGGATAAATTATCTTCCTG
TTATACCTCGCGGAATTCGGAATCCAAATTCGAAAATCTCTTAAGATAGA
TAATCGGTGTACGGTAACTTCGTATAAAACATATTTGTATAAGGACAATT
CGTATAAAATATTTTCATATAGCGACATTTCGAATAAAAACAATTTCGTA
TAAAACCATTTCGTATAAATTTATGAGGAAACGGGGCATAGACAGTTTGA
ATTGTCATTGTATACACCGAATGTTGAGGGTGTTTTCGAATACCGGCGAT
ACTTAAGTAACTACTAAGAGCCCCTTACATCCCCCTATTGTACTCCTAAT
GTTGGGGGTGTTTTCGGGTACTGCTGTGTCCCAAAACGGGATGCAACCCA
CCACCGATTCTTGAAGAAACTACTAAGAGCCCCCCACTATCCCCCAATTG
TACTCCAAATGTTGGGGGGGGGGGGGTGTTTTSGGTTWTTMTTGGGTACC
AAAACGGGACCCCCGGAGGCCCCGTTTCCTCATAAACTTATACGAAATGG
TTTTATGGCGATTACGTAATTATTATTATGAGTACTACTTTTAAACAAAG
AATCACTACTCATGTTTGATAAATATTTCAGTATAAGTACTTAATTATTG
GATTTAAGTACAAGTACCATTGTATTTGGCCCATCCCTGATGTATACTGT
GGAAATTAAAAATAACGAAGAGATCACTCTCTATAATTTTTCCTAATATT
CAAACAAGTGATCGAATAAGTTTAAATGAACTAATTTTAAATTAATCTCA
ACCCATGGATTTTAAAATAAATGATTGCAATTCTAACTTGGGTAAAAAAA
ATATAGACTAAATAAATAAATTGAAATGGATTTCAATATACAAAAATTAA
TTTAAAAGGACTATTTGGATATCATCATTTGTGTATTAAATATTGACATT
CTATAAAGAAAATAACAATAGTTGCATTGATGAGTCAAAAGTATATCATT
CAAAAGTCCAATTAGCACGTTTGATGCCATTAATGATCAATAACTTCCTT
CTATTTATGTGCTTTGGACAAGTAAACACTTAATGGACGAGAAACACGTA
GAATTTGTTCTTACAGTATACATTTGGCATTACCATTAGGAAAATATACG
TAATTATTGGGCATTTATAGCAAATAATTAAATTAAGAGCACAAAGTACT
AAATAAAAATAAGCCAATCAGAAACGAGAAGGAAAAATATGATCTTCTTG
TACTTAAAGGATTCCACGGAAAAAGATGTCCTTGAAAGGACTCTAGGCAA
AGAGCGGTCAAGGGGAAAATAAACAATTCAATCTAAGGCACAGGGAAGAA
TATGTTCCTAATGTAGTCACCCTTATTTTTCTCTTTTGGCCAGGCGGAGT
CTCACATGGCAAATTTTTAGAAAACCGTTGGCACCGTTCTAAACTAGAGA
ATTAAAATGAAGTAACGAAAAGCGATCGTTAGCTTGAAGAAATACAATGG
TGCAGTGTTTTAACATTTTTTCGCAAGATGTCGCTCTTCACTCTGTTATT
TTTCTCATTGACATAAATTTGTTATAACAAAGAGTGATGCTTGATGAGGC
ACGCCTAGCTTACACTCTAAAACACTCTAAAATTGCTGTGGGGAAAGAAT
GAATTAATTTATGCATTGATTTTTAATTTTTTGAATATCCCACCAAAGAG
AAGAGGAGTTTTCAATTATACATTTATGATTTATTAATTTTAGTATAATA
ATTAATAGTATACTTTAAGAAACAATGATCAATTATTGTCAGAAGTAGGA
ACTTGGACTCCAGACTTTCTTTGGACTCCGTKGCTAAGTCCATCTTCTGG
GCCTCGAATGAACATCTTCTAGAAAGTAAAATATATTAGATACAATCGTA
ACTTCAAATTATATTTCCAAATAATAACTAAACAGTACCTCTAGGGGACA
AAAAAGAATCTTTCTCACGTATTGATCTCGTGGGTCCTCGTTTTGCTACA
TGGTTTAAAGCTTTACTCTAGACTAAAACTAAATTTTCTGGATATCTAAA
TCCATCACAAATATCTATAAGGAATTTTTAAAATTTATCAGATAAAAAAA
TAAATTGGGGATTTTTAATCATTTTTATTATTGGTTATCTATTGTAAAGA
GCTTAACAAATTACAAAAAAAAATAAATGATTCATGTTAATGTATCGTAT
TTTTTTAAACAAAGCTTCAAATTTGAGAGTGTTTTGTGATAATATATACA
TACATGAGTGTAAGGAAATTCAAAAGAAGCCGGGAAAATCAAAGTTGTAC
GCTCATCCATGCAAGTAAGCAAGCAACCAACACGTATGGTTTGCAGGCAT
GCCTTAAATAACTATTATGAAGAATACGAGAAAAAGAACATCCGAAACAC
TGATGCTAATTTGCGTCAGTGTCAAAATGACAGTCGTTTGAATAGATAG
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