EMLSAG00000006349, EMLSAG00000006349-689115 (gene) Lepeophtheirus salmonis

Overview


Name	EMLSAG00000006349
Unique Name	EMLSAG00000006349-689115
Type	gene
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of EMLSAG00000006349 vs. GO
Match: - (symbol:RpI12 "RpI12" species:7227 "Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS;NAS] [GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS;NAS] [GO:0006360 "transcription from RNA polymerase I promoter" evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 EMBL:AE014297 GO:GO:0005634 GO:GO:0008270 GO:GO:0003676 GO:GO:0006363 GO:GO:0003899 eggNOG:COG1594 GeneTree:ENSGT00390000008126 KO:K03000 OrthoDB:EOG7HMS3G InterPro:IPR019761 PROSITE:PS01030 EMBL:BT050591 RefSeq:NP_524439.1 UniGene:Dm.16638 SMR:Q9VD81 STRING:7227.FBpp0083564 EnsemblMetazoa:FBtr0084166 GeneID:42563 KEGG:dme:Dmel_CG13418 UCSC:CG13418-RA CTD:42563 FlyBase:FBgn0038903 InParanoid:Q9VD81 OMA:KCKFKES GenomeRNAi:42563 NextBio:829443 PRO:PR:Q9VD81 Uniprot:Q9VD81)

HSP 1 Score: 108.612 bits (270), Expect = 2.128e-29
Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 0

Query:    6 FSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAV-ARTVGVNDLQSE-PTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            FS+ P FC  CGSILP +  KG++ C  C  +    ++  ++  ++I FN  +   V  RT   ++  ++ P VER C  C H  MSYA LQLRSADEGQTVFFTCLKCKFKE+ENS
Sbjct:    4 FSNCPGFCPSCGSILPELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 120

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BLAST of EMLSAG00000006349 vs. GO
Match: - (symbol:Znrd1 "DNA-directed RNA polymerase I subunit RPA12" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IBA] [GO:0006363 "termination of RNA polymerase I transcription" evidence=IBA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001054 "RNA polymerase I activity" evidence=IBA] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 RGD:1303114 GO:GO:0008270 GO:GO:0003676 GO:GO:0006363 GO:GO:0005736 GO:GO:0003899 CTD:30834 eggNOG:COG1594 GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133 HOVERGEN:HBG055084 KO:K03000 OMA:TVTCTRC OrthoDB:EOG7HMS3G TreeFam:TF313881 InterPro:IPR019761 PROSITE:PS01030 EMBL:BX883052 RefSeq:NP_001159772.1 RefSeq:NP_998732.1 UniGene:Rn.4312 ProteinModelPortal:Q6MFY5 STRING:10116.ENSRNOP00000001012 PRIDE:Q6MFY5 Ensembl:ENSRNOT00000001012 GeneID:361784 KEGG:rno:361784 UCSC:RGD:1303114 InParanoid:Q6MFY5 NextBio:677596 PRO:PR:Q6MFY5 Genevestigator:Q6MFY5 Uniprot:Q6MFY5)

HSP 1 Score: 99.3673 bits (246), Expect = 7.197e-26
Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 0

Query:    4 ATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            + F SD  FC DCGS+LP    +  + C  CG   D+  F  K +  S+ FNK     +  +V        P V+R CS CGH  M+Y   Q+RSADEGQTVF+TC+ CKF+E E+S
Sbjct:    8 SNFQSDLDFCPDCGSVLPLPGVQDTVICPRCGFSIDVRDFGGKVVKTSVVFNKL-GTVIPMSVDEGPESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCINCKFQEKEDS 123

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BLAST of EMLSAG00000006349 vs. GO
Match: - (symbol:Znrd1 "zinc ribbon domain containing 1" species:10116 "Rattus norvegicus" [GO:0001054 "RNA polymerase I activity" evidence=IBA] [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IBA] [GO:0006363 "termination of RNA polymerase I transcription" evidence=IBA] [GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 RGD:1303114 GO:GO:0008270 GO:GO:0003676 GO:GO:0006363 GO:GO:0005736 GO:GO:0003899 CTD:30834 eggNOG:COG1594 GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133 HOVERGEN:HBG055084 KO:K03000 OMA:TVTCTRC OrthoDB:EOG7HMS3G TreeFam:TF313881 InterPro:IPR019761 PROSITE:PS01030 EMBL:BX883052 RefSeq:NP_001159772.1 RefSeq:NP_998732.1 UniGene:Rn.4312 ProteinModelPortal:Q6MFY5 STRING:10116.ENSRNOP00000001012 PRIDE:Q6MFY5 Ensembl:ENSRNOT00000001012 GeneID:361784 KEGG:rno:361784 UCSC:RGD:1303114 InParanoid:Q6MFY5 NextBio:677596 PRO:PR:Q6MFY5 Genevestigator:Q6MFY5 Uniprot:Q6MFY5)

HSP 1 Score: 99.3673 bits (246), Expect = 7.197e-26
Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 0

Query:    4 ATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            + F SD  FC DCGS+LP    +  + C  CG   D+  F  K +  S+ FNK     +  +V        P V+R CS CGH  M+Y   Q+RSADEGQTVF+TC+ CKF+E E+S
Sbjct:    8 SNFQSDLDFCPDCGSVLPLPGVQDTVICPRCGFSIDVRDFGGKVVKTSVVFNKL-GTVIPMSVDEGPESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCINCKFQEKEDS 123

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BLAST of EMLSAG00000006349 vs. GO
Match: - (symbol:ZNRD1 "DNA-directed RNA polymerase I subunit RPA12" species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IBA] [GO:0006363 "termination of RNA polymerase I transcription" evidence=IBA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001054 "RNA polymerase I activity" evidence=IBA] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 GO:GO:0008270 GO:GO:0003676 GO:GO:0006363 GO:GO:0005736 GO:GO:0003899 EMBL:BC114799 RefSeq:NP_001039865.1 RefSeq:XP_003583930.1 UniGene:Bt.1771 ProteinModelPortal:Q1RMP0 STRING:9913.ENSBTAP00000043102 Ensembl:ENSBTAT00000045075 GeneID:100849450 GeneID:535288 KEGG:bta:100849450 KEGG:bta:535288 CTD:30834 eggNOG:COG1594 GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133 HOVERGEN:HBG055084 InParanoid:Q1RMP0 KO:K03000 OMA:TVTCTRC OrthoDB:EOG7HMS3G TreeFam:TF313881 NextBio:20876684 ArrayExpress:Q1RMP0 InterPro:IPR019761 PROSITE:PS01030 Uniprot:Q1RMP0)

HSP 1 Score: 96.2857 bits (238), Expect = 1.396e-24
Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 0

Query:    4 ATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQ--SEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            ++F SD  FC DCGS+LP    +  + C+ CG   ++  F  K +  S+ FNK   L  A  + + +      P V+R CS CGH  M+Y   Q+RSADEGQTVF+TC  CKF+E E+S
Sbjct:    8 SSFQSDLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNK---LGTAMPLSMEEGPEFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKEDS 123

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BLAST of EMLSAG00000006349 vs. GO
Match: - (symbol:ZNRD1 "DNA-directed RNA polymerase subunit" species:9615 "Canis lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IBA] [GO:0006363 "termination of RNA polymerase I transcription" evidence=IBA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001054 "RNA polymerase I activity" evidence=IBA] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 GO:GO:0008270 GO:GO:0003676 GO:GO:0006363 GO:GO:0005736 GO:GO:0003899 GeneTree:ENSGT00390000008126 OMA:TVTCTRC OrthoDB:EOG7HMS3G TreeFam:TF313881 InterPro:IPR019761 PROSITE:PS01030 EMBL:AAEX03017624 ProteinModelPortal:F1PIF7 Ensembl:ENSCAFT00000019352 Uniprot:F1PIF7)

HSP 1 Score: 95.1301 bits (235), Expect = 3.164e-24
Identity = 50/119 (42.02%), Postives = 67/119 (56.30%), Query Frame = 0

Query:    2 ASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            + + F SD  FC DCGS+LP   ++  + C  CG    +  F  K +   I FN+      A      +LQ  P V+R CS CGH  M+Y   Q+RSADEGQTVF+TC  C+F+E E+S
Sbjct:    9 SGSRFQSDLDFCPDCGSVLPLPGAQDAVTCVRCGFGVPVRDFEGKVVRTRIVFNQVGTAVPAPVQEEPELQG-PVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTSCRFQEKEDS 126

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BLAST of EMLSAG00000006349 vs. GO
Match: - (symbol:Znrd1 "zinc ribbon domain containing, 1" species:10090 "Mus musculus" [GO:0001054 "RNA polymerase I activity" evidence=IBA] [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IBA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0006363 "termination of RNA polymerase I transcription" evidence=IBA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 MGI:MGI:1913386 GO:GO:0005654 GO:GO:0008270 GO:GO:0003676 GO:GO:0006363 GO:GO:0005736 GO:GO:0003899 CTD:30834 eggNOG:COG1594 GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133 HOVERGEN:HBG055084 KO:K03000 OMA:TVTCTRC OrthoDB:EOG7HMS3G TreeFam:TF313881 InterPro:IPR019761 PROSITE:PS01030 EMBL:AF230339 EMBL:AF230340 EMBL:AK003714 EMBL:BC043016 EMBL:AK005976 RefSeq:NP_075651.1 RefSeq:XP_006524855.1 RefSeq:XP_006536746.1 RefSeq:XP_006536913.1 RefSeq:XP_006537477.1 UniGene:Mm.486229 ProteinModelPortal:Q791N7 SMR:Q791N7 STRING:10090.ENSMUSP00000109299 PaxDb:Q791N7 PRIDE:Q791N7 Ensembl:ENSMUST00000113669 Ensembl:ENSMUST00000172518 GeneID:66136 KEGG:mmu:66136 UCSC:uc008clo.1 InParanoid:Q791N7 Reactome:REACT_107193 NextBio:320734 PRO:PR:Q791N7 ArrayExpress:Q791N7 Bgee:Q791N7 CleanEx:MM_ZNRD1 Genevestigator:Q791N7 Uniprot:Q791N7)

HSP 1 Score: 94.7449 bits (234), Expect = 4.700e-24
Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 0

Query:    4 ATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVND---LQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            + F SD  FC DCGS+LP    +  + CS CG   D+     K +  S+ FNK   L     + V++   LQ  P ++R C  CGH  M+Y   Q+RSADEGQTVF+TC+ CKF+E E+S
Sbjct:    8 SNFQSDLDFCPDCGSVLPLPGIQDTVICSRCGFSIDVRDCEGKVVKTSVVFNK---LGATIPLSVDEGPELQG-PVIDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCINCKFQEKEDS 123

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BLAST of EMLSAG00000006349 vs. GO
Match: - (symbol:ZNRD1 "DNA-directed RNA polymerase subunit" species:9823 "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 GO:GO:0005634 GO:GO:0008270 GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 CTD:30834 eggNOG:COG1594 GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133 HOVERGEN:HBG055084 KO:K03000 OMA:TVTCTRC OrthoDB:EOG7HMS3G TreeFam:TF313881 InterPro:IPR019761 PROSITE:PS01030 EMBL:CT737425 EMBL:CU607067 EMBL:AB158486 EMBL:AB158487 EMBL:AP009553 RefSeq:NP_001162172.1 RefSeq:XP_001929376.1 UniGene:Ssc.45148 STRING:9823.ENSSSCP00000001321 Ensembl:ENSSSCT00000001352 Ensembl:ENSSSCT00000001359 Ensembl:ENSSSCT00000034579 GeneID:100152094 GeneID:100155727 KEGG:ssc:100152094 KEGG:ssc:100155727 Uniprot:B6ICU4)

HSP 1 Score: 94.3597 bits (233), Expect = 5.753e-24
Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 0

Query:    3 SATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            S++F SD  FC DCGS+LP   ++  + C+ CG   ++  F  K +  S+ F K    A+  ++        P V+R C  CGH  M+Y   Q+RSADEGQTVF+TC  CKF+E E+S
Sbjct:    7 SSSFQSDLDFCPDCGSVLPLPGTQDAVICTRCGFSINVRDFEGKVVKTSVVFQK-VGTAMPMSMEEGPEFQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKEDS 123

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BLAST of EMLSAG00000006349 vs. GO
Match: - (symbol:ZNRD1 "DNA-directed RNA polymerase I subunit RPA12" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IBA] [GO:0006139 "nucleobase-containing compound metabolic process" evidence=TAS] [GO:0006363 "termination of RNA polymerase I transcription" evidence=IBA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001054 "RNA polymerase I activity" evidence=IBA] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 GO:GO:0008270 GO:GO:0003676 GO:GO:0006363 GO:GO:0005736 GO:GO:0003899 EMBL:AL669914 EMBL:AL671859 EMBL:AL845439 EMBL:BX088647 CTD:30834 eggNOG:COG1594 HOGENOM:HOG000228133 HOVERGEN:HBG055084 KO:K03000 OMA:TVTCTRC OrthoDB:EOG7HMS3G TreeFam:TF313881 InterPro:IPR019761 PROSITE:PS01030 EMBL:AF024617 EMBL:AF230337 EMBL:AF230338 EMBL:CR457109 EMBL:BC010898 EMBL:BC050608 RefSeq:NP_001265714.1 RefSeq:NP_001265715.1 RefSeq:NP_055411.1 RefSeq:NP_740753.1 UniGene:Hs.57813 ProteinModelPortal:Q9P1U0 SMR:Q9P1U0 BioGrid:119050 IntAct:Q9P1U0 MINT:MINT-1435192 STRING:9606.ENSP00000383503 DMDM:71649339 PaxDb:Q9P1U0 PeptideAtlas:Q9P1U0 PRIDE:Q9P1U0 DNASU:30834 Ensembl:ENST00000332435 Ensembl:ENST00000359374 Ensembl:ENST00000376782 Ensembl:ENST00000376785 Ensembl:ENST00000383613 Ensembl:ENST00000400659 Ensembl:ENST00000400660 Ensembl:ENST00000400662 Ensembl:ENST00000412396 Ensembl:ENST00000417275 Ensembl:ENST00000417738 Ensembl:ENST00000420100 Ensembl:ENST00000428913 Ensembl:ENST00000429558 Ensembl:ENST00000431032 Ensembl:ENST00000431416 Ensembl:ENST00000432227 Ensembl:ENST00000432545 Ensembl:ENST00000432904 Ensembl:ENST00000433264 Ensembl:ENST00000437373 Ensembl:ENST00000437507 Ensembl:ENST00000441251 Ensembl:ENST00000442585 Ensembl:ENST00000443142 Ensembl:ENST00000443494 Ensembl:ENST00000444027 Ensembl:ENST00000444794 Ensembl:ENST00000446493 Ensembl:ENST00000451875 Ensembl:ENST00000453694 Ensembl:ENST00000455948 GeneID:30834 KEGG:hsa:30834 UCSC:uc003noz.3 GeneCards:GC06P030026 GeneCards:GC06Pi29963 GeneCards:GC06Pj30016 GeneCards:GC06Pk30017 GeneCards:GC06Pl30021 GeneCards:GC06Pm30105 GeneCards:GC06Pn30016 GeneCards:GC06Po30016 HGNC:HGNC:13182 HPA:HPA055074 MIM:607525 neXtProt:NX_Q9P1U0 PharmGKB:PA37754 InParanoid:Q9P1U0 PhylomeDB:Q9P1U0 GeneWiki:ZNRD1 GenomeRNAi:30834 NextBio:52944 PRO:PR:Q9P1U0 ArrayExpress:Q9P1U0 Bgee:Q9P1U0 CleanEx:HS_ZNRD1 Genevestigator:Q9P1U0 Uniprot:Q9P1U0)

HSP 1 Score: 93.9745 bits (232), Expect = 1.134e-23
Identity = 50/119 (42.02%), Postives = 70/119 (58.82%), Query Frame = 0

Query:    4 ATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQ--SEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            ++F SD  FCSDCGS+LP   ++  + C  CG   ++  F  K +  S+ F++   L  A  + V +      P V+R C  CGH  M+Y   Q+RSADEGQTVF+TC  CKF+E E+S
Sbjct:   11 SSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQ---LGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKEDS 126

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BLAST of EMLSAG00000006349 vs. GO
Match: - (symbol:znrd1 "zinc ribbon domain containing 1" species:7955 "Danio rerio" [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 ZFIN:ZDB-GENE-050320-131 GO:GO:0008270 GO:GO:0003676 GO:GO:0006363 GO:GO:0005736 GO:GO:0003899 CTD:30834 GeneTree:ENSGT00390000008126 KO:K03000 OMA:TVTCTRC OrthoDB:EOG7HMS3G InterPro:IPR019761 PROSITE:PS01030 EMBL:FP085397 EMBL:BX537309 RefSeq:XP_005170087.1 UniGene:Dr.84519 Ensembl:ENSDART00000139323 GeneID:541428 KEGG:dre:541428 PRO:PR:F1R4I1 ArrayExpress:F1R4I1 Bgee:F1R4I1 Uniprot:F1R4I1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.523e-21
Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = 0

Query:    6 FSSDPSFCSDCGSILPNVPSK-GHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            F  D  FC +CG+ILP +PS+   + C  C  K  +  F  + I  S+ FN  +   VA     +     P ++R CS C    M Y   Q+RSADEGQTVFFTC+ C+F+E E+S
Sbjct:   12 FRGDVDFCPECGNILP-LPSRLNTITCPRCSFKISVQDFTSQVIKSSVMFNPLDQSNVAVESAEDAELKGPVIDRKCSRCNKEGMVYHTRQMRSADEGQTVFFTCIHCRFQEKEDS 126

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BLAST of EMLSAG00000006349 vs. GO
Match: - (symbol:rpoa-12 species:6239 "Caenorhabditis elegans" [GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0006898 "receptor-mediated endocytosis" evidence=IMP] [GO:0002119 "nematode larval development" evidence=IMP] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS51133 SMART:SM00440 GO:GO:0008270 GO:GO:0003676 GO:GO:0006363 GO:GO:0005736 GO:GO:0003899 EMBL:Z81035 eggNOG:COG1594 GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133 KO:K03000 PIR:T19321 RefSeq:NP_506572.1 UniGene:Cel.4753 ProteinModelPortal:O17587 SMR:O17587 STRING:6239.C15H11.8 PaxDb:O17587 EnsemblMetazoa:C15H11.8.1 EnsemblMetazoa:C15H11.8.2 GeneID:182648 KEGG:cel:CELE_C15H11.8 UCSC:C15H11.8 CTD:182648 WormBase:C15H11.8 InParanoid:O17587 OMA:TMQTRSA NextBio:918334 PRO:PR:O17587 Uniprot:O17587)

HSP 1 Score: 83.5741 bits (205), Expect = 7.582e-20
Identity = 49/123 (39.84%), Postives = 71/123 (57.72%), Query Frame = 0

Query:    1 MASATFSSDPSFCSDCGSILPNVPSKG--HLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGV-NDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            MA    S D  FC  CG+IL  +P++    + C  C ++  +   +D+ +S   +  +R    VA T G+ ND  ++  V+  C+ CGH   SY+ +Q RSADEGQTVF+TCLKCK K+ E S
Sbjct:    1 MALNFLSYDDDFCGYCGAIL-ELPAQAPATVSCKVCSTRWAVKERVDQVVSRVEKIYER---TVADTDGIENDESADAVVDHICTKCGHSKASYSTMQTRSADEGQTVFYTCLKCKKKDIEYS 119

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BLAST of EMLSAG00000006349 vs. C. finmarchicus
Match: gi|592906249|gb|GAXK01052126.1| (TSA: Calanus finmarchicus comp28311_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 122.094 bits (305), Expect = 2.850e-33
Identity = 60/119 (50.42%), Postives = 78/119 (65.55%), Query Frame = 0

Query:    3 SATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTV-GVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            + TFS +  FC  CGS+LP++ ++G + C  C       LF +K I Y++ FN +E+    +   G  D    P +ER C  CGH LMSYAA+QLRSADEGQTVFFTCLKCK+KE+ENS
Sbjct:  533 TQTFSPEVDFCPGCGSLLPSLTARGDVTCICCKFVVSSKLFDEKVIRYTVHFNSQENTVKKKAAAGEVDHADGPIIERKCPKCGHDLMSYAAIQLRSADEGQTVFFTCLKCKYKESENS 889

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BLAST of EMLSAG00000006349 vs. C. finmarchicus
Match: gi|592846454|gb|GAXK01111090.1| (TSA: Calanus finmarchicus comp697326_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 6.475e-1
Identity = 16/50 (32.00%), Postives = 28/50 (56.00%), Query Frame = 0

Query:   69 NDLQSEPTV-ERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKET 117
            ++L++E T+ E +C  CG  L + A L   +  + + + + C KC FK T
Sbjct: 1649 DNLKTENTIGEYSCDECGSVLKTKAGLMKHTKSKHRGILYDCDKCDFKAT 1798

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BLAST of EMLSAG00000006349 vs. C. finmarchicus
Match: gi|592892878|gb|GAXK01065497.1| (TSA: Calanus finmarchicus comp5668_c21_seq34 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 6.582e-1
Identity = 12/40 (30.00%), Postives = 24/40 (60.00%), Query Frame = 0

Query:   81 CSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            C+ C  G  S + LQL S+   + + ++C +C+++ T+ S
Sbjct:  196 CNVCKAGFKSKSGLQLHSSSNHEKILYSCNRCEYQATQQS 315

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BLAST of EMLSAG00000006349 vs. C. finmarchicus
Match: gi|592892854|gb|GAXK01065521.1| (TSA: Calanus finmarchicus comp5668_c32_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.706e+0
Identity = 13/39 (33.33%), Postives = 20/39 (51.28%), Query Frame = 0

Query:   81 CSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETEN 119
            C  CG G   Y AL     ++ + V + C +C++K TE 
Sbjct:    9 CGECGSGYSRYDALMQHVRNKHEGVRYACDQCEYKATEQ 125

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BLAST of EMLSAG00000006349 vs. C. finmarchicus
Match: gi|592915145|gb|GAXK01043230.1| (TSA: Calanus finmarchicus comp51917_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.961e+0
Identity = 14/50 (28.00%), Postives = 26/50 (52.00%), Query Frame = 0

Query:   74 EPTVERTCSNCG---HGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            +P  ER C  C     G  S + LQL S+   + + ++C + +++ T+ S
Sbjct:  124 QPGFERKCYKCKVCKAGFKSKSGLQLHSSSNHERILYSCNRFEYQATQQS 273

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BLAST of EMLSAG00000006349 vs. C. finmarchicus
Match: gi|592952660|gb|GAXK01005893.1| (TSA: Calanus finmarchicus comp68543_c16_seq27 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 3.061e+0
Identity = 13/51 (25.49%), Postives = 24/51 (47.06%), Query Frame = 0

Query:   65 TVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFK 115
            TV  + L     V  +C+ C H     A L+    ++ + V + C +C++K
Sbjct:   70 TVKTHQLNKHEGVRYSCNQCEHQATKLAHLKRHKENKHEGVRYFCDQCEYK 222

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BLAST of EMLSAG00000006349 vs. C. finmarchicus
Match: gi|592915146|gb|GAXK01043229.1| (TSA: Calanus finmarchicus comp51917_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.865e+0
Identity = 14/50 (28.00%), Postives = 26/50 (52.00%), Query Frame = 0

Query:   74 EPTVERTCSNC---GHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            +P  ER C  C     G  S + LQL S+   + + ++C + +++ T+ S
Sbjct:  137 QPGSERKCYKCTVCKLGFKSKSGLQLHSSSNHERILYSCNRFEYQATQQS 286

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BLAST of EMLSAG00000006349 vs. C. finmarchicus
Match: gi|592881797|gb|GAXK01076341.1| (TSA: Calanus finmarchicus comp624752_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 4.314e+0
Identity = 15/49 (30.61%), Postives = 20/49 (40.82%), Query Frame = 0

Query:   72 QSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            + EP     C  C H + S   L L        VF+ C  C+FK  + S
Sbjct:  915 RKEPKTLFVCGICDHKVKSKQGLYLHKRSTHDKVFYNCEFCEFKAPQRS 1061

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BLAST of EMLSAG00000006349 vs. C. finmarchicus
Match: gi|592872951|gb|GAXK01084611.1| (TSA: Calanus finmarchicus comp699823_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 5.070e+0
Identity = 12/44 (27.27%), Postives = 22/44 (50.00%), Query Frame = 0

Query:   72 QSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFK 115
            Q+   +E TC+ C     SY +LQ     E +   ++C +C+ +
Sbjct:  606 QTHEGIETTCAECNKEFPSYNSLQYHVRKEHRAYRYSCSQCEHQ 737

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BLAST of EMLSAG00000006349 vs. C. finmarchicus
Match: gi|592908231|gb|GAXK01050144.1| (TSA: Calanus finmarchicus comp30239_c10_seq4 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.865e+0
Identity = 26/92 (28.26%), Postives = 38/92 (41.30%), Query Frame = 0

Query:   23 VPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAAL-QLRSADEGQTVFFTCLKCK 113
             P   ++   A G K +I+L  +K+ S  ++    E         V + QSE    R CS CG    S   L Q R    G+   F C +C+
Sbjct:  834 TPLDANVVEDASGPKEEINLISEKQESEQLDGEINE---------VENKQSEKNKSRACSECGKSFSSSTGLKQHRIVHTGEKP-FKCDQCE 1079

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BLAST of EMLSAG00000006349 vs. L. salmonis peptides
Match: EMLSAP00000006349 (pep:novel supercontig:LSalAtl2s:LSalAtl2s346:669977:670339:-1 gene:EMLSAG00000006349 transcript:EMLSAT00000006349 description:"augustus_masked-LSalAtl2s346-processed-gene-6.4")

HSP 1 Score: 247.284 bits (630), Expect = 2.295e-85
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0

Query:    1 MASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            MASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS
Sbjct:    1 MASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120

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BLAST of EMLSAG00000006349 vs. SwissProt
Match: gi|71153715|sp|Q6MFY5.1|RPA12_RAT (RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=Zinc ribbon domain-containing protein 1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.985e-27
Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 0

Query:    4 ATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            + F SD  FC DCGS+LP    +  + C  CG   D+  F  K +  S+ FNK     +  +V        P V+R CS CGH  M+Y   Q+RSADEGQTVF+TC+ CKF+E E+S
Sbjct:    8 SNFQSDLDFCPDCGSVLPLPGVQDTVICPRCGFSIDVRDFGGKVVKTSVVFNKL-GTVIPMSVDEGPESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCINCKFQEKEDS 123

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BLAST of EMLSAG00000006349 vs. SwissProt
Match: gi|110287946|sp|Q1RMP0.1|RPA12_BOVIN (RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=Zinc ribbon domain-containing protein 1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.030e-25
Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 0

Query:    4 ATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQ--SEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            ++F SD  FC DCGS+LP    +  + C+ CG   ++  F  K +  S+ FNK   L  A  + + +      P V+R CS CGH  M+Y   Q+RSADEGQTVF+TC  CKF+E E+S
Sbjct:    8 SSFQSDLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNK---LGTAMPLSMEEGPEFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKEDS 123

[Close]

BLAST of EMLSAG00000006349 vs. SwissProt
Match: gi|71153713|sp|Q5TM50.1|RPA12_MACMU (RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=Zinc ribbon domain-containing protein 1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.398e-25
Identity = 50/119 (42.02%), Postives = 71/119 (59.66%), Query Frame = 0

Query:    4 ATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQ--SEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            ++F SD  FCSDCGS+LP   ++  + C+ CG   ++  F  K +  S+ F++   L  A  + V +      P V+R C  CGH  M+Y   Q+RSADEGQTVF+TC  CKF+E E+S
Sbjct:   11 SSFQSDLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQ---LGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKEDS 126

[Close]

BLAST of EMLSAG00000006349 vs. SwissProt
Match: gi|71153714|sp|Q791N7.1|RPA12_MOUSE (RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=Zinc ribbon domain-containing protein 1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.565e-25
Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 0

Query:    4 ATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVND---LQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            + F SD  FC DCGS+LP    +  + CS CG   D+     K +  S+ FNK   L     + V++   LQ  P ++R C  CGH  M+Y   Q+RSADEGQTVF+TC+ CKF+E E+S
Sbjct:    8 SNFQSDLDFCPDCGSVLPLPGIQDTVICSRCGFSIDVRDCEGKVVKTSVVFNK---LGATIPLSVDEGPELQG-PVIDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCINCKFQEKEDS 123

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BLAST of EMLSAG00000006349 vs. SwissProt
Match: gi|71649339|sp|Q9P1U0.1|RPA12_HUMAN (RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=Zinc ribbon domain-containing protein 1 >gi|110287947|sp|Q1XHV8.1|RPA12_PANTR RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=Zinc ribbon domain-containing protein 1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.851e-25
Identity = 50/119 (42.02%), Postives = 70/119 (58.82%), Query Frame = 0

Query:    4 ATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQ--SEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            ++F SD  FCSDCGS+LP   ++  + C  CG   ++  F  K +  S+ F++   L  A  + V +      P V+R C  CGH  M+Y   Q+RSADEGQTVF+TC  CKF+E E+S
Sbjct:   11 SSFQSDLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQ---LGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKEDS 126

[Close]

BLAST of EMLSAG00000006349 vs. SwissProt
Match: gi|417695|sp|P32529.1|RPA12_YEAST (RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=A12; AltName: Full=A12.2; AltName: Full=DNA-directed RNA polymerase I 13.7 kDa polypeptide)

HSP 1 Score: 64.3142 bits (155), Expect = 3.356e-13
Identity = 41/117 (35.04%), Postives = 62/117 (52.99%), Query Frame = 0

Query:   12 FCSDCGSIL--PNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNK-----REDLAVART-VGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            FC DCG +L  PN     ++ CS C +    S F + ++  +   +      R   +V +T +  N+L+   T++  C  CG+  M+Y  LQLRSADEG TVF+TC  C +K   N+
Sbjct:    9 FCLDCGDLLENPNAVLGSNVECSQCKAIYPKSQFSNLKVVTTTADDAFPSSLRAKKSVVKTSLKKNELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGYKFRTNN 125

[Close]

BLAST of EMLSAG00000006349 vs. SwissProt
Match: gi|3024570|sp|Q58548.1|TFS_METJA (RecName: Full=Transcription factor S; AltName: Full=Transcription elongation factor IIS/RNA polymerase subunit homolog; Short=TFIIS/RPSU homolog)

HSP 1 Score: 61.6178 bits (148), Expect = 2.605e-12
Identity = 34/103 (33.01%), Postives = 49/103 (47.57%), Query Frame = 0

Query:   11 SFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEF-NKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKC 112
             FC  C +++  +P  G L C+ CG + + +    KE  Y     NK+E + V  + G+  L   PT    C  CGH    +   Q R ADE +T F+ C KC
Sbjct:    3 KFCPKCNNLM--LPKDGKLKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVIESEGLETL---PTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKC 100

[Close]

BLAST of EMLSAG00000006349 vs. SwissProt
Match: gi|9297043|sp|O94703.1|RPA12_SCHPO (RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName: Full=DNA-directed RNA polymerase I 13.1 kDa polypeptide)

HSP 1 Score: 56.6102 bits (135), Expect = 2.287e-10
Identity = 33/111 (29.73%), Postives = 56/111 (50.45%), Query Frame = 0

Query:   12 FCSDCGSILPNVPSKGHLC--CSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            FCS+CG++L +  ++   C  C +       +  + +  S +  F     L  +     +  +   T+E  C  CG+  M++  LQLRSADEG TVF+ C +C +K + N+
Sbjct:    9 FCSECGNLLESTTAQWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSIVQVESQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTNN 119

[Close]

BLAST of EMLSAG00000006349 vs. SwissProt
Match: gi|152031672|sp|O27369.2|TFS_METTH (RecName: Full=Transcription factor S; AltName: Full=Transcription elongation factor IIS/RNA polymerase subunit homolog; Short=TFIIS/RPSU homolog)

HSP 1 Score: 54.6842 bits (130), Expect = 9.437e-10
Identity = 33/103 (32.04%), Postives = 49/103 (47.57%), Query Frame = 0

Query:   11 SFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCK 113
             FC  CG+++   PS+G   C  CG + DI+  L  +   S E   +E +        +D+ + PT    C  CG+    +   Q R ADE +T FF C +CK
Sbjct:    2 EFCPKCGAVM--FPSEGKFKCQ-CGYEKDITDKLKDKYRVSEEVEAKETIIFT----GDDVNTLPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRCTRCK 97

[Close]

BLAST of EMLSAG00000006349 vs. SwissProt
Match: gi|3024569|sp|Q56254.1|TFS_THECE (RecName: Full=Transcription factor S; AltName: Full=Transcription elongation factor IIS/RNA polymerase subunit homolog; Short=TFIIS/RPSU homolog)

HSP 1 Score: 54.299 bits (129), Expect = 1.362e-9
Identity = 29/105 (27.62%), Postives = 48/105 (45.71%), Query Frame = 0

Query:   11 SFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKE---ISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKC 112
             FC  CG+++     +    C +CG +       D+E   I   ++    E + V       DL++ PT + TC  CG+    +  +Q R+ DE  T+F+ C KC
Sbjct:    2 KFCPKCGNLMLPDRKRKVWVCRSCGYEEPFDEEKDREKTVIKQEVKHKPDEGIVVIE----QDLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKC 102

[Close]

BLAST of EMLSAG00000006349 vs. Select Arthropod Genomes
Match: XP_003249576.2 (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Apis mellifera])

HSP 1 Score: 122.094 bits (305), Expect = 3.120e-36
Identity = 62/119 (52.10%), Postives = 76/119 (63.87%), Query Frame = 0

Query:    2 ASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            ++ +F S P FCSDCGSILP +  KG++ C AC        F D  +SY+I FNK    A+++     +    P VER C  C +  MSYA LQLRSADEGQTVF+TC KCKFKETENS
Sbjct:    5 STVSFISTPGFCSDCGSILPLLGDKGNVTCYACKRIWGPEAFGDMSMSYTIHFNKTNVYALSKQNDEKEEAEGPIVERKCPQCQNDKMSYATLQLRSADEGQTVFYTCTKCKFKETENS 123

[Close]

BLAST of EMLSAG00000006349 vs. Select Arthropod Genomes
Match: EFX81535.1 (hypothetical protein DAPPUDRAFT_303407 [Daphnia pulex])

HSP 1 Score: 117.472 bits (293), Expect = 1.805e-34
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 0

Query:    1 MASAT-FSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSE-PTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            MA+ T F+ DP FC  CG+ILP + + G + C  C  + DI +  +  + Y+I+FNKR D    + +     +++ P VER CS CG+  MSYA+LQLRSADEGQT+F+TC KC+ KETENS
Sbjct:    1 MAAITQFNCDPQFCPRCGAILPILGTAGGVMCIVCKFEIDIQVMEEVRVDYNIDFNKRSDYIEEQQLKSAQSKTDGPLVERKCSKCGNETMSYASLQLRSADEGQTIFYTCTKCQHKETENS 122

[Close]

BLAST of EMLSAG00000006349 vs. Select Arthropod Genomes
Match: AAF55918.1 (RpI12 [Drosophila melanogaster])

HSP 1 Score: 108.612 bits (270), Expect = 6.080e-31
Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 0

Query:    6 FSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAV-ARTVGVNDLQSE-PTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            FS+ P FC  CGSILP +  KG++ C  C  +    ++  ++  ++I FN  +   V  RT   ++  ++ P VER C  C H  MSYA LQLRSADEGQTVFFTCLKCKFKE+ENS
Sbjct:    4 FSNCPGFCPSCGSILPELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 120

[Close]

BLAST of EMLSAG00000006349 vs. Select Arthropod Genomes
Match: EAA07851.5 (AGAP002375-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 107.457 bits (267), Expect = 1.212e-30
Identity = 55/113 (48.67%), Postives = 68/113 (60.18%), Query Frame = 0

Query:    9 DPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSE-PTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            DP FC DCGSILP + +   + C  C S+ D + F   E  Y+I FN   +    +       ++E P V R C  CG+  MSYA LQLRSADEGQTVFFTC KCK+K +ENS
Sbjct:    2 DPGFCPDCGSILPPLKNSNRVSCYGCQSEFDAAAFGTMETEYTIHFNSYANKKSDQADRAEGEEAEGPIVNRQCPKCGNDQMSYATLQLRSADEGQTVFFTCTKCKYKMSENS 114

[Close]

BLAST of EMLSAG00000006349 vs. Select Arthropod Genomes
Match: gb|EEZ99110.1| (DNA-directed RNA polymerase I subunit RPA12-like Protein [Tribolium castaneum])

HSP 1 Score: 107.842 bits (268), Expect = 1.366e-30
Identity = 58/120 (48.33%), Postives = 70/120 (58.33%), Query Frame = 0

Query:    6 FSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSE-----PTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            F S   FC DCGSILP +   G + C AC       +F   + SY I FN R D         N+ + E     P V+R C+ CGH  M+YA +QLRSADEGQTVF+TC KCKFKE+ENS
Sbjct:    7 FESIEGFCPDCGSILPPLKQTGGVKCYACERNFPSDVFRGTKASYVIHFNSR-DYKTHSMNKQNNKKDEEEDDGPVVDRKCAKCGHDKMTYATVQLRSADEGQTVFYTCTKCKFKESENS 125

[Close]

BLAST of EMLSAG00000006349 vs. Select Arthropod Genomes
Match: EEB10862.1 (DNA-directed RNA polymerase I subunit, putative [Pediculus humanus corporis])

HSP 1 Score: 100.138 bits (248), Expect = 1.624e-27
Identity = 55/120 (45.83%), Postives = 67/120 (55.83%), Query Frame = 0

Query:    5 TFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSE----PTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            TF  +  FC +CGSILP +     + C  C  +     F   E  Y I+F  R       T   N  + +    P VER CS CG+ +MSYA LQLRSADEGQTVF+TC KC +KETENS
Sbjct:    7 TFEGEKGFCWNCGSILPMLDDSAVVKCFMCKFEYGPEAFGAMESHYQIKF--RSPYGYKETENFNQRKMQKNEGPVVERKCSKCGNDIMSYATLQLRSADEGQTVFYTCTKCGYKETENS 124

[Close]

BLAST of EMLSAG00000006349 vs. Select Arthropod Genomes
Match: gb|EEC13174.1| (DNA-directed RNA polymerase I, putative [Ixodes scapularis])

HSP 1 Score: 99.3673 bits (246), Expect = 2.493e-27
Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = 0

Query:    2 ASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQ-SEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            +S+ F+SD  FC +CGS+LP    +  + C  C ++ D+  F   E +  + FN R+ +A+ +T   +  + + P V+R CS CGH  M+YA LQ RSADEGQT+F++C +C F+ETENS
Sbjct:    3 SSSCFASDTDFCKNCGSVLPLPGLEDFVVCRRCDARIDVRNFDGLETTSKVTFNDRK-VALKKTSSASSAKPAGPLVDRKCSRCGHEGMTYATLQTRSADEGQTIFYSCPECLFQETENS 121

[Close]

BLAST of EMLSAG00000006349 vs. Select Arthropod Genomes
Match: gb|KFM76853.1| (DNA-directed RNA polymerase I subunit RPA12, partial [Stegodyphus mimosarum])

HSP 1 Score: 98.5969 bits (244), Expect = 4.936e-27
Identity = 54/124 (43.55%), Postives = 72/124 (58.06%), Query Frame = 0

Query:    1 MASATF-SSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSE---PTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            MAS  F  SDP FC+ CG +LP   ++  + CS C  K D+  F    I+Y I+FN +      +     + +S    P V+R CS CGH  M+YA LQ RSADEGQTVF++C  C+ +E ENS
Sbjct:    1 MASKNFIQSDPDFCARCGGVLPLPGNEDVVICSICAYKVDVRKFDGLTITYEIKFNNKGKYRRKKEKEKEERKSAALGPLVDRECSKCGHQGMTYATLQTRSADEGQTVFYSCPNCQNQEHENS 124

[Close]

BLAST of EMLSAG00000006349 vs. nr
Match: gi|290561092|gb|ADD37948.1| (DNA-directed RNA polymerase I subunit RPA12 [Lepeophtheirus salmonis])

HSP 1 Score: 247.284 bits (630), Expect = 3.829e-83
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0

Query:    1 MASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            MASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS
Sbjct:    1 MASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120

[Close]

BLAST of EMLSAG00000006349 vs. nr
Match: gi|225709336|gb|ACO10514.1| (DNA-directed RNA polymerase I subunit RPA12 [Caligus rogercresseyi])

HSP 1 Score: 195.282 bits (495), Expect = 1.856e-62
Identity = 94/120 (78.33%), Postives = 104/120 (86.67%), Query Frame = 0

Query:    1 MASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            M S  F+SDPSFCSDCGSILP+VPS+G L C ACGS+AD+S FLDKEI+Y+IEFNKREDL VAR V  ++  SEPTVERTC NCG+  MSYAALQLRSADEGQTVFFTCLKCKFKETENS
Sbjct:    1 MTSRAFTSDPSFCSDCGSILPDVPSRGPLHCVACGSEADVSQFLDKEITYTIEFNKREDLDVARRVNEDNSSSEPTVERTCPNCGYSKMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120

[Close]

BLAST of EMLSAG00000006349 vs. nr
Match: gi|952512114|gb|KRT78901.1| (hypothetical protein AMK59_6479 [Oryctes borbonicus])

HSP 1 Score: 125.561 bits (314), Expect = 6.460e-35
Identity = 62/122 (50.82%), Postives = 80/122 (65.57%), Query Frame = 0

Query:    2 ASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAV---ARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            +S  FSS P FCSDCGSILP +  +G++ C  C  +  + +F +K++ Y+I FN +E       A++   N     P V+R C  CG+  MSYA LQLRSADEGQTVF+TC KCKFKETENS
Sbjct:    3 SSEIFSSYPGFCSDCGSILPLLRDRGNVICYTCSKEYPVDVFGNKKVHYTIHFNSQEAFTKNIDAKSSKENKEDDGPVVDRNCPKCGNNQMSYATLQLRSADEGQTVFYTCTKCKFKETENS 124

[Close]

BLAST of EMLSAG00000006349 vs. nr
Match: gi|572307876|ref|XP_006619784.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Apis dorsata])

HSP 1 Score: 123.25 bits (308), Expect = 6.028e-34
Identity = 63/119 (52.94%), Postives = 76/119 (63.87%), Query Frame = 0

Query:    2 ASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            +S +F S P FCSDCGSILP +  KG++ C AC        F D  +SY+I FNK    A+++     +    P VER C  C +  MSYA LQLRSADEGQTVF+TC KCKFKETENS
Sbjct:    5 SSVSFISTPGFCSDCGSILPLLGDKGNVTCYACKRVWGPEAFGDMSMSYTIHFNKTNVYALSKQNDEKEEAEGPIVERKCPQCQNDKMSYATLQLRSADEGQTVFYTCTKCKFKETENS 123

[Close]

BLAST of EMLSAG00000006349 vs. nr
Match: gi|1032025071|ref|XP_003249576.2| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Apis mellifera])

HSP 1 Score: 122.094 bits (305), Expect = 1.527e-33
Identity = 62/119 (52.10%), Postives = 76/119 (63.87%), Query Frame = 0

Query:    2 ASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            ++ +F S P FCSDCGSILP +  KG++ C AC        F D  +SY+I FNK    A+++     +    P VER C  C +  MSYA LQLRSADEGQTVF+TC KCKFKETENS
Sbjct:    5 STVSFISTPGFCSDCGSILPLLGDKGNVTCYACKRIWGPEAFGDMSMSYTIHFNKTNVYALSKQNDEKEEAEGPIVERKCPQCQNDKMSYATLQLRSADEGQTVFYTCTKCKFKETENS 123

[Close]

BLAST of EMLSAG00000006349 vs. nr
Match: gi|665810086|ref|XP_008553446.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Microplitis demolitor])

HSP 1 Score: 122.094 bits (305), Expect = 1.640e-33
Identity = 60/115 (52.17%), Postives = 78/115 (67.83%), Query Frame = 0

Query:    6 FSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            F++DP+FC+DCGSILP +  +G + C  C  +    +F D ++SY+I FN  ++ A A+          P ++R CS CG+  MSYA LQLRSADEGQTVFFTC KCKFKETENS
Sbjct:    9 FTTDPNFCADCGSILPLLGDRGGVTCYTCKREWGSDVFGDMKMSYTINFN--DESAYAKPEDDKKKSEGPVIDRKCSQCGNDKMSYATLQLRSADEGQTVFFTCTKCKFKETENS 121

[Close]

BLAST of EMLSAG00000006349 vs. nr
Match: gi|350407595|ref|XP_003488137.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Bombus impatiens])

HSP 1 Score: 121.709 bits (304), Expect = 2.497e-33
Identity = 65/120 (54.17%), Postives = 77/120 (64.17%), Query Frame = 0

Query:    4 ATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSE---PTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
             +F S P FCSDCGSILP +  KG++ C AC        F D  +SY+IEFNK+     ++    ND+  E   P VER C  C +  MSYA LQLRSADEGQTVF+TC KCKFKETENS
Sbjct:    6 GSFISTPGFCSDCGSILPLLGDKGNVKCYACKRVWGPEAFGDMAMSYTIEFNKKNVYGSSKEK--NDVMEEAEGPIVERKCPQCQNDKMSYATLQLRSADEGQTVFYTCTKCKFKETENS 123

[Close]

BLAST of EMLSAG00000006349 vs. nr
Match: gi|998522150|ref|XP_015522135.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Neodiprion lecontei])

HSP 1 Score: 120.939 bits (302), Expect = 4.539e-33
Identity = 60/124 (48.39%), Postives = 78/124 (62.90%), Query Frame = 0

Query:    1 MASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSE----PTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            M++ TF +DP FC DCGSILP + + G + C +C     I +F D  +SY++ FN ++  A +   G      +    P VER C  C +  MSYA LQLRSADEGQTVF+TC KC+FKETENS
Sbjct:    1 MSTVTFKTDPGFCPDCGSILPLLVNVGGVACYSCKRNWGIEVFGDMAVSYTLNFNSKDAYASSARQGEAADDEDEAEGPVVERRCPQCQNDKMSYATLQLRSADEGQTVFYTCTKCRFKETENS 124

[Close]

BLAST of EMLSAG00000006349 vs. nr
Match: gi|380030611|ref|XP_003698937.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Apis florea])

HSP 1 Score: 120.939 bits (302), Expect = 4.810e-33
Identity = 61/119 (51.26%), Postives = 75/119 (63.03%), Query Frame = 0

Query:    2 ASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            ++ +F S P FCSDCGSILP +  KG++ C AC        F D  +SY+I FNK     +++     +    P VER C  C +  MSYA LQLRSADEGQTVF+TC KCKFKETENS
Sbjct:    5 STVSFISTPGFCSDCGSILPLLGDKGNVTCYACKRVWGPEAFGDMSMSYTIHFNKTNVYTLSKQNDEKEEAEGPIVERKCPQCQNDKMSYATLQLRSADEGQTVFYTCTKCKFKETENS 123

[Close]

BLAST of EMLSAG00000006349 vs. nr
Match: gi|907706323|ref|XP_013110439.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Stomoxys calcitrans])

HSP 1 Score: 120.168 bits (300), Expect = 7.382e-33
Identity = 60/116 (51.72%), Postives = 73/116 (62.93%), Query Frame = 0

Query:    6 FSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDLQSE-PTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            F+S P FC  CGSI P + +  ++ C  C       +F D+ + Y+I FN  +   + +T    D   E P VER CS CGH  MSYA LQLRSADEGQTVFFTCLKCKFKE+ENS
Sbjct:    4 FTSTPGFCPSCGSIFPPLDASKNVTCYNCQKSYKPDVFGDQIVEYTIHFNNYDPEKLVKTKEEQDTSPEGPIVERKCSKCGHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 119

[Close]

BLAST of EMLSAG00000006349 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold272_size230267-processed-gene-0.2 (protein:Tk00251 transcript:snap_masked-scaffold272_size230267-processed-gene-0.2-mRNA-1 annotation:"GJ24301")

HSP 1 Score: 126.716 bits (317), Expect = 4.109e-39
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 0

Query:    1 MASATFSSDPSFCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKRED-LAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            + +  F+ + +FC  CG++LP +P +G++ C AC  +  I  F +  + Y+I FN+ ED  A  R   + +    PTVER C  CGH  MSYAALQLRSADEGQTVFFTCLKCKFKE+ENS
Sbjct:    3 LLAQPFACEVNFCPSCGTLLPTLPRQGNVFCQACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGEEAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 123

[Close]

BLAST of EMLSAG00000006349 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold272_size230267-processed-gene-0.12 (protein:Tk00256 transcript:snap_masked-scaffold272_size230267-processed-gene-0.12-mRNA-1 annotation:"GJ24301")

HSP 1 Score: 101.679 bits (252), Expect = 1.170e-29
Identity = 53/90 (58.89%), Postives = 61/90 (67.78%), Query Frame = 0

Query:   32 SACGSKADISLFLDKEISYSIEFNKRED-LAVARTVGVNDLQSEPTVERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKCKFKETENS 120
            SAC  +  I  F +  + Y+I FN+ ED  A  R   + +    PTVER C  CGH  MSYAALQLRSADEGQTVFFTCLKCKFKE+ENS
Sbjct:    3 SACQHEVPIESFSELTLEYTIRFNQVEDSRAKRRGGELGEEAEGPTVERRCPKCGHEKMSYAALQLRSADEGQTVFFTCLKCKFKESENS 92

The following BLAST results are available for this feature:

BLAST of EMLSAG00000006349 vs. GO
BLAST of EMLSAG00000006349 vs. C. finmarchicus
BLAST of EMLSAG00000006349 vs. L. salmonis peptides
BLAST of EMLSAG00000006349 vs. SwissProt
BLAST of EMLSAG00000006349 vs. Select Arthropod Genomes
BLAST of EMLSAG00000006349 vs. nr
BLAST of EMLSAG00000006349 vs. Tigriopus kingsejongenis genes

BLAST of EMLSAG00000006349 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 25


Match Name	E-value	Identity	Description
-	2.128e-29	49.57	symbol:RpI12 "RpI12" species:7227 "Drosophila mela...	[more]
-	7.197e-26	43.59	symbol:Znrd1 "DNA-directed RNA polymerase I subuni...	[more]
-	7.197e-26	43.59	symbol:Znrd1 "zinc ribbon domain containing 1" spe...	[more]
-	1.396e-24	42.86	symbol:ZNRD1 "DNA-directed RNA polymerase I subuni...	[more]
-	3.164e-24	42.02	symbol:ZNRD1 "DNA-directed RNA polymerase subunit"...	[more]
-	4.700e-24	43.33	symbol:Znrd1 "zinc ribbon domain containing, 1" sp...	[more]
-	5.753e-24	41.53	symbol:ZNRD1 "DNA-directed RNA polymerase subunit"...	[more]
-	1.134e-23	42.02	symbol:ZNRD1 "DNA-directed RNA polymerase I subuni...	[more]
-	4.523e-21	40.52	symbol:znrd1 "zinc ribbon domain containing 1" spe...	[more]
-	7.582e-20	39.84	symbol:rpoa-12 species:6239 "Caenorhabditis elegan...	[more]

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BLAST of EMLSAG00000006349 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 20


Match Name	E-value	Identity	Description
gi\|592906249\|gb\|GAXK01052126.1\|	2.850e-33	50.42	TSA: Calanus finmarchicus comp28311_c0_seq1 transc...	[more]
gi\|592846454\|gb\|GAXK01111090.1\|	6.475e-1	32.00	TSA: Calanus finmarchicus comp697326_c2_seq1 trans...	[more]
gi\|592892878\|gb\|GAXK01065497.1\|	6.582e-1	30.00	TSA: Calanus finmarchicus comp5668_c21_seq34 trans...	[more]
gi\|592892854\|gb\|GAXK01065521.1\|	1.706e+0	33.33	TSA: Calanus finmarchicus comp5668_c32_seq1 transc...	[more]
gi\|592915145\|gb\|GAXK01043230.1\|	1.961e+0	28.00	TSA: Calanus finmarchicus comp51917_c1_seq2 transc...	[more]
gi\|592952660\|gb\|GAXK01005893.1\|	3.061e+0	25.49	TSA: Calanus finmarchicus comp68543_c16_seq27 tran...	[more]
gi\|592915146\|gb\|GAXK01043229.1\|	3.865e+0	28.00	TSA: Calanus finmarchicus comp51917_c1_seq1 transc...	[more]
gi\|592881797\|gb\|GAXK01076341.1\|	4.314e+0	30.61	TSA: Calanus finmarchicus comp624752_c0_seq1 trans...	[more]
gi\|592872951\|gb\|GAXK01084611.1\|	5.070e+0	27.27	TSA: Calanus finmarchicus comp699823_c0_seq1 trans...	[more]
gi\|592908231\|gb\|GAXK01050144.1\|	5.865e+0	28.26	TSA: Calanus finmarchicus comp30239_c10_seq4 trans...	[more]

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BLAST of EMLSAG00000006349 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1


Match Name	E-value	Identity	Description
EMLSAP00000006349	2.295e-85	100.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s346:66997...	[more]

BLAST of EMLSAG00000006349 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 12


Match Name	E-value	Identity	Description
gi\|71153715\|sp\|Q6MFY5.1\|RPA12_RAT	4.985e-27	43.59	RecName: Full=DNA-directed RNA polymerase I subuni...	[more]
gi\|110287946\|sp\|Q1RMP0.1\|RPA12_BOVIN	1.030e-25	42.86	RecName: Full=DNA-directed RNA polymerase I subuni...	[more]
gi\|71153713\|sp\|Q5TM50.1\|RPA12_MACMU	2.398e-25	42.02	RecName: Full=DNA-directed RNA polymerase I subuni...	[more]
gi\|71153714\|sp\|Q791N7.1\|RPA12_MOUSE	3.565e-25	43.33	RecName: Full=DNA-directed RNA polymerase I subuni...	[more]
gi\|71649339\|sp\|Q9P1U0.1\|RPA12_HUMAN	8.851e-25	42.02	RecName: Full=DNA-directed RNA polymerase I subuni...	[more]
gi\|417695\|sp\|P32529.1\|RPA12_YEAST	3.356e-13	35.04	RecName: Full=DNA-directed RNA polymerase I subuni...	[more]
gi\|3024570\|sp\|Q58548.1\|TFS_METJA	2.605e-12	33.01	RecName: Full=Transcription factor S; AltName: Ful...	[more]
gi\|9297043\|sp\|O94703.1\|RPA12_SCHPO	2.287e-10	29.73	RecName: Full=DNA-directed RNA polymerase I subuni...	[more]
gi\|152031672\|sp\|O27369.2\|TFS_METTH	9.437e-10	32.04	RecName: Full=Transcription factor S; AltName: Ful...	[more]
gi\|3024569\|sp\|Q56254.1\|TFS_THECE	1.362e-9	27.62	RecName: Full=Transcription factor S; AltName: Ful...	[more]

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BLAST of EMLSAG00000006349 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 8


Match Name	E-value	Identity	Description
XP_003249576.2	3.120e-36	52.10	PREDICTED: DNA-directed RNA polymerase I subunit R...	[more]
EFX81535.1	1.805e-34	48.36	hypothetical protein DAPPUDRAFT_303407 [Daphnia pu...	[more]
AAF55918.1	6.080e-31	49.57	RpI12 [Drosophila melanogaster]	[more]
EAA07851.5	1.212e-30	48.67	AGAP002375-PA [Anopheles gambiae str. PEST]	[more]
gb\|EEZ99110.1\|	1.366e-30	48.33	DNA-directed RNA polymerase I subunit RPA12-like P...	[more]
EEB10862.1	1.624e-27	45.83	DNA-directed RNA polymerase I subunit, putative [P...	[more]
gb\|EEC13174.1\|	2.493e-27	42.50	DNA-directed RNA polymerase I, putative [Ixodes sc...	[more]
gb\|KFM76853.1\|	4.936e-27	43.55	DNA-directed RNA polymerase I subunit RPA12, parti...	[more]

BLAST of EMLSAG00000006349 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25


Match Name	E-value	Identity	Description
gi\|290561092\|gb\|ADD37948.1\|	3.829e-83	100.00	DNA-directed RNA polymerase I subunit RPA12 [Lepeo...	[more]
gi\|225709336\|gb\|ACO10514.1\|	1.856e-62	78.33	DNA-directed RNA polymerase I subunit RPA12 [Calig...	[more]
gi\|952512114\|gb\|KRT78901.1\|	6.460e-35	50.82	hypothetical protein AMK59_6479 [Oryctes borbonicu...	[more]
gi\|572307876\|ref\|XP_006619784.1\|	6.028e-34	52.94	PREDICTED: DNA-directed RNA polymerase I subunit R...	[more]
gi\|1032025071\|ref\|XP_003249576.2\|	1.527e-33	52.10	PREDICTED: DNA-directed RNA polymerase I subunit R...	[more]
gi\|665810086\|ref\|XP_008553446.1\|	1.640e-33	52.17	PREDICTED: DNA-directed RNA polymerase I subunit R...	[more]
gi\|350407595\|ref\|XP_003488137.1\|	2.497e-33	54.17	PREDICTED: DNA-directed RNA polymerase I subunit R...	[more]
gi\|998522150\|ref\|XP_015522135.1\|	4.539e-33	48.39	PREDICTED: DNA-directed RNA polymerase I subunit R...	[more]
gi\|380030611\|ref\|XP_003698937.1\|	4.810e-33	51.26	PREDICTED: DNA-directed RNA polymerase I subunit R...	[more]
gi\|907706323\|ref\|XP_013110439.1\|	7.382e-33	51.72	PREDICTED: DNA-directed RNA polymerase I subunit R...	[more]

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BLAST of EMLSAG00000006349 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2


Match Name	E-value	Identity	Description
snap_masked-scaffold272_size230267-processed-gene-0.2	4.109e-39	51.24	protein:Tk00251 transcript:snap_masked-scaffold272...	[more]
snap_masked-scaffold272_size230267-processed-gene-0.12	1.170e-29	58.89	protein:Tk00256 transcript:snap_masked-scaffold272...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s346	supercontig	LSalAtl2s346:669977..670339 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016
Blast vs. GO	2014-04-02
TblastN vs C. finmarchicus TSA	2014-05-09
Blastp vs. self	2014-05-10
Blastp vs. SwissProt	2017-02-10
Blastp vs. Selected Arthropods	2017-02-20
Blastp vs. NR (2/2017)	2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins	2018-04-18

Properties


Property Name	Value
Logic name	ensemblgenomes
Description	augustus_masked-LSalAtl2s346-processed-gene-6.4
Biotype	protein_coding
Evidence	IEA
Note	DNA-directed RNA polymerase I subunit RPA12 [Lepeophtheirus salmonis]

Cross References

External references for this gene


Database	Accession
Ensembl Metazoa (gene)	EMLSAG00000006349 (primary cross-reference)

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
EMLSAT00000006349	EMLSAT00000006349-702196	Lepeophtheirus salmonis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at LSalAtl2s346:669977..670339-

gene from alignment at LSalAtl2s346:669977..670339-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAG00000006349-689115 ID=EMLSAG00000006349-689115|Name=EMLSAG00000006349|organism=Lepeophtheirus salmonis|type=gene|length=363bp|location=Sequence derived from alignment at LSalAtl2s346:669977..670339- (Lepeophtheirus salmonis)
ATGGCATCGGCAACATTTAGTTCTGACCCTAGTTTTTGCTCAGATTGCGG
CTCTATTCTTCCAAACGTTCCTTCTAAGGGCCACCTCTGTTGCAGTGCTT
GCGGATCTAAGGCAGACATTTCTTTATTTCTTGATAAGGAGATTTCCTAC
AGCATTGAATTCAACAAAAGAGAGGACCTTGCTGTTGCTCGCACTGTCGG
GGTGAACGATCTTCAAAGTGAGCCCACTGTGGAAAGAACATGCTCTAATT
GTGGACATGGATTGATGTCCTATGCTGCCCTTCAATTGAGATCGGCTGAT
GAAGGACAAACTGTGTTTTTTACGTGTCTCAAATGTAAATTCAAGGAAAC
TGAAAATTCCTAA

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