EMLSAG00000006413, EMLSAG00000006413-689179 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000006413 vs. C. finmarchicus
Match: gi|592761390|gb|GAXK01193023.1| (TSA: Calanus finmarchicus comp3359269_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 2.755e+0 Identity = 20/55 (36.36%), Postives = 26/55 (47.27%), Query Frame = 0 Query: 85 GNVKLLKKP--CNFLGYSHVPCRTKKYC--------KCNGTDHFTSCCNSGLSNT 129 G+V L+ KP C F G +H R K++C KC HF+ C SG S Sbjct: 171 GSVNLVTKPMKCRFCGSNHS--RGKQFCQAAGKKCDKCGKIGHFSKVCLSGASQA 329
BLAST of EMLSAG00000006413 vs. C. finmarchicus
Match: gi|592766024|gb|GAXK01188544.1| (TSA: Calanus finmarchicus comp10968_c2_seq2 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 6.101e+0 Identity = 25/87 (28.74%), Postives = 39/87 (44.83%), Query Frame = 0 Query: 64 YKGPKGTRRPGSINSRRDRPQGNVKLLKKPCNFLGYSH--VPCRTKKYCKCNGTDHFTSCCNSGLSNTVALSVNGELVTFLIDWGAN 148 Y P G I++R++ P L PC L YS + + C T +C N+GLS+ V + L+ FL++ G+N Sbjct: 13 YFNPLAPSACGFISARKE-PATPTSCLT-PCFCLTYSAAWLAQNSSAVMICVITRSLYNCSNAGLSDKVLFFSSNSLLIFLLNLGSN 267
BLAST of EMLSAG00000006413 vs. L. salmonis peptides
Match: EMLSAP00000006413 (pep:novel supercontig:LSalAtl2s:LSalAtl2s350:792007:796320:1 gene:EMLSAG00000006413 transcript:EMLSAT00000006413 description:"snap_masked-LSalAtl2s350-processed-gene-6.21") HSP 1 Score: 381.719 bits (979), Expect = 2.406e-136 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 Query: 1 MILDALIFRLAKRRLSMNFPIDSFDPNKIAISAVVKCWIEDNLSCKSVSEEWGAMRLAVLMSEYKGPKGTRRPGSINSRRDRPQGNVKLLKKPCNFLGYSHVPCRTKKYCKCNGTDHFTSCCNSGLSNTVALSVNGELVTFLIDWGANVNILLMSRTPAPPSSKFSGHITAYGGNKILTYDPVA 184 MILDALIFRLAKRRLSMNFPIDSFDPNKIAISAVVKCWIEDNLSCKSVSEEWGAMRLAVLMSEYKGPKGTRRPGSINSRRDRPQGNVKLLKKPCNFLGYSHVPCRTKKYCKCNGTDHFTSCCNSGLSNTVALSVNGELVTFLIDWGANVNILLMSRTPAPPSSKFSGHITAYGGNKILTYDPVA Sbjct: 1 MILDALIFRLAKRRLSMNFPIDSFDPNKIAISAVVKCWIEDNLSCKSVSEEWGAMRLAVLMSEYKGPKGTRRPGSINSRRDRPQGNVKLLKKPCNFLGYSHVPCRTKKYCKCNGTDHFTSCCNSGLSNTVALSVNGELVTFLIDWGANVNILLMSRTPAPPSSKFSGHITAYGGNKILTYDPVA 184 The following BLAST results are available for this feature:
BLAST of EMLSAG00000006413 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000006413 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000006413 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000006413 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000006413 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000006413 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000006413 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s350:792007..796320+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000006413-689179 ID=EMLSAG00000006413-689179|Name=EMLSAG00000006413|organism=Lepeophtheirus salmonis|type=gene|length=4314bp|location=Sequence derived from alignment at LSalAtl2s350:792007..796320+ (Lepeophtheirus salmonis)back to top Add to Basket
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