EMLSAG00000006451, EMLSAG00000006451-689217 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006451
Unique NameEMLSAG00000006451-689217
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000006451 vs. C. finmarchicus
Match: gi|592755909|gb|GAXK01198504.1| (TSA: Calanus finmarchicus comp507525_c2_seq4 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 2.517e+0
Identity = 12/38 (31.58%), Postives = 23/38 (60.53%), Query Frame = 0 
Query:   55 SKLILSNKLINPVHQQDLQCYPNRFQTAIPALLTRQTQ 92
            + L+L + +I+ +H+  L C+P  +   + ALL R+ Q
Sbjct:  637 TNLLLLHDIISGLHRTSLFCFPFPWSKPLAALLIRENQ 750
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BLAST of EMLSAG00000006451 vs. C. finmarchicus
Match: gi|592755911|gb|GAXK01198502.1| (TSA: Calanus finmarchicus comp507525_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 2.527e+0
Identity = 12/38 (31.58%), Postives = 23/38 (60.53%), Query Frame = 0 
Query:   55 SKLILSNKLINPVHQQDLQCYPNRFQTAIPALLTRQTQ 92
            + L+L + +I+ +H+  L C+P  +   + ALL R+ Q
Sbjct:  637 TNLLLLHDIISGLHRTSLFCFPFPWSKPLAALLIRENQ 750
[Close]
BLAST of EMLSAG00000006451 vs. L. salmonis peptides
Match: EMLSAP00000006451 (pep:novel supercontig:LSalAtl2s:LSalAtl2s352:464489:468474:1 gene:EMLSAG00000006451 transcript:EMLSAT00000006451 description:"snap-LSalAtl2s352-processed-gene-4.10")

HSP 1 Score: 197.978 bits (502), Expect = 1.293e-66
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 
Query:    1 MVNCSTSLLLLGLISKLKKLKDQNQGLEKKLVTDGISKTINVGYRQLMTDARNGSKLILSNKLINPVHQQDLQCYPNRFQTAIPALLTRQTQGNLLKQM 99
            MVNCSTSLLLLGLISKLKKLKDQNQGLEKKLVTDGISKTINVGYRQLMTDARNGSKLILSNKLINPVHQQDLQCYPNRFQTAIPALLTRQTQGNLLKQM
Sbjct:    1 MVNCSTSLLLLGLISKLKKLKDQNQGLEKKLVTDGISKTINVGYRQLMTDARNGSKLILSNKLINPVHQQDLQCYPNRFQTAIPALLTRQTQGNLLKQM 99
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006451 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006451 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592755909|gb|GAXK01198504.1|2.517e+031.58TSA: Calanus finmarchicus comp507525_c2_seq4 trans... [more]
gi|592755911|gb|GAXK01198502.1|2.527e+031.58TSA: Calanus finmarchicus comp507525_c2_seq2 trans... [more]
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BLAST of EMLSAG00000006451 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000064511.293e-66100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s352:46448... [more]
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BLAST of EMLSAG00000006451 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006451 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006451 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006451 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s352supercontigLSalAtl2s352:464489..468474 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s352-processed-gene-4.10
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006451 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006451EMLSAT00000006451-702298Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s352:464489..468474+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006451-689217 ID=EMLSAG00000006451-689217|Name=EMLSAG00000006451|organism=Lepeophtheirus salmonis|type=gene|length=3986bp|location=Sequence derived from alignment at LSalAtl2s352:464489..468474+ (Lepeophtheirus salmonis)
ATGGTAAATTGCTCAACTAGTCTTTTGCTCCTTGGTCTCATTTCCAAGCT
TAAGAAGCTCAAGGATCAAAACCAGGGTCTTGAGAAGAAACTTGTAACTG
ATGGGATTAGTAAGACGATAAATGTGGGGTTTCTGTCTGAAATCNCGKCC
ACCACTAAGAAATGTCCACAACTAGTAGGAGTAGCTTCGAAACTCCTGTT
TAATGTATCTGACTATATCATAAGAAAAGTTTTGAAGGGATTAAGTGCAT
TTTCTTATGTGTGTAGATATCGACAACTCATGACAGATGCCAGAAATGGA
TCCAAGTTGATCCTATCCAATAAGCTCATCAACCCTGTCCACCAACAGGA
TCTTCAATGTTACCCAAATCGATTCCAAACTGCAATCCCTGCACTTTTGA
CGCGGCAAACGTGAATCCCCATTCTAATATCAATAAAGAGTGGGTCAAAA
TATCAACATACTTTTTGAAAATGACTTGCCTTCAAGGGCAAAGGTGGCCT
TTTTGAAAAATAATTAATTTGCCATTAGTCATCAAGTAGTTTCATTGTTC
TATCATTTGTACTTTTTGTGAATCTTAAAGAAGTTGATAATATGGGATTT
TTTCTCAATTGATTTCTAAAATTGTAGCCGACAAGTATTAATTAAATAGC
ACTGTGTAATTGTGTAGTGTTTTTTTTTCTCAAAACCTCCTATTTCTTTT
TAAGAAGAAGAATTAACTGGGGCAAAACATATGGCGAGTCCTTCAAATTA
TTATCTTAGGGTTTAAGTATCTTAAGTAGAACAATACCTCTAACACTCTA
TGTAAACTGATAGACTAAACAGTTTGAAGTAGTATGCGGTACAAGCAAAA
AAAAAGTACTTTAGAGAAACCCATTCAGATGGATTTATGACTTTGCAGGG
TATTACTTTATTGTGGTGAGATGTTGAAAATTGGTTGAAACGAGTCTGAA
TATTTAATAGTTCAATCGTAAATGTCACATTAGTCAACTAAATGCCATTC
TTAATACTATTTACATAAAGGGCCAAGAAACGTTATTTTTATGGGCCTGG
TTGATGCATATCTGATCAATTAGTATATACATAGGAACCAGACAATCAAT
TTATATAAGTAGGCATATAGATTCTCGATATTTACATACTTATATGCTAA
TTGCCCTCCGCTATGTCAAATATATAATATGTAAAGATAATATATTTGTT
TTTTCCATAATTTGATTTGGTTTYAATAATATAATKATAAAATTGAGAAM
GAGSCCAGKCCGCCATTAAATTTGGTTGCATATACACTTTTTAACAATTT
TTTAGATACTTTTAATGATATCTACCATAATAAATATTGAAAAAATATTA
ATAAGCCCTTTCAAAGGCTATTTGTATATAAGTATACTCTCAAATAAGAA
CATTCTAACAAAAATGTTGCAGTTATCGGAAGTGAATCTAAAAATATACA
TGACTTATTCTTTATAGTAAAATTTCAAGTATTTCTCACCTGTAATAAGG
ATTCTTTTTGTAAAGAAAATACTAAGTTTAGAAATTAGAAAAGGAAAAAC
GATTGTTGTGTGTGCTCCTTCGTCTTTTTAGTTCATTATTTAATGGGTCG
TTTTGGTGTTAACTTCTCCCTCTGAAATAAACATTATCACCAATCTTTGT
GGTAACTTGTTTTAAAAATGCACAATAAAATAATTTCATATGAATTTATA
TATACGTTTTCCATGCACTTTTGCTATTTTTAATTTAGAAGTTAATTAAA
GTTAGAAGAAAATAAAATAATTCACTTCTTATTAGTAATGTATTTAAAAT
ATGCATCTCAGAAAATATATATTTATGATTTTTTTCTTAGCCAAGGAAAT
CTCCTCAAGCGTAGAGGAGCGTTTCGTCCCTTTTAGATTGTTTTGAATAG
AACCAAAGATCTATTTTCTTGGATATGGTGTATGATTATAATGGGTAGCA
CATGAAAGATAATATAACAAAAATATGTTCTAAATTAAAATAAATATTTT
TGGAATTAATGATTAGTTATTTTAAAAGTGTCATTCATAGAGGGTTTCTT
TCTCGAGGGTTTACATTTAAGTATTTTATATAGTAAGGAGACCGGAATCG
ATTGTAACAGGCCCTCTTTCTTGAACATCAAAAAAGCTAAAATAATAAAA
TTTATATCAGAATTGTATAATTTAAGACAATACTGTGAAAAAAAAACAAT
ATTTATTGTCTTATCTTTTTGAAACTGATTTTGTGAGGTATGAGTGATTT
TTGTAATAATATTGTGACTTTTTCAATTGTTTTGTAATTGATACCATTCG
AATTATAAATCATTTTTCAAACTCTTGATAAAATTTCTGTGAGGAGAAAT
TGTAATGTCCAGTACAAAGGGGACAGTTGCAACAAGTGATGTAGTTTTCC
TCGCATAGTTTATTATTTTGTACAATTACACTACAAATTAAGCATGTTTT
TATCCAAAACAAGGCACTGAAGAGTTTTTTGATAGTGAGTTTATCCCATA
TTACTTATAAGTGACTTATAATACAAATCTTATTACATTTTACTCTAGTA
TAATACAAGAAATTTAACAATTCAACCTCATGTTAAGACAAGTTTTCTAT
TTATCAAAAAATATTATTTTGTATAATTTTCCTAATTTCGAACTCAAATT
TGATATTTTTTACTGGTACAACCGTCTTTGGCAACAAAAAAAAGTTGTAA
CATTTGAAGGGTCGCATTTTGGAATTTTTTTTTGACTAATATAGCCTTCA
AACTGTAACAAACATATGTAAGTATACTGTGTTAAAATTTGGTGAGTCTA
AGTTGAATCAGTTCGAAGTAATTGAGCCAAAAACAAAAAGTTTTACAACC
ACCCTTCCTATATATTTACTTCTGGAAAAAAGTTCATCAAAGTATCTCAA
AATATCAAATAAGAAATTTGCCATGAAGTGTTGTGGCTATTTTTTTAAAT
TTATTAAATATACCTTAGCTATAGCTCATGTTTTCACGTGAAGTCACAAT
GCATATGTAGACAGCACTACCTCATGGTAGTTTTTATACTGTCAAATGTA
AAAATGCTGTCTGTTCAGTCTTGACGTCGTTGAAAATGCTATATTTCAAG
TAGCTGCCTTTAATGCATCATGCAACCTTTAATCTGAAAAGAGACTGAAA
AAAGCACAAAAATTAGCTTTTATCTAGTCAATCTAGTTAAGGTAACAACG
TGATTCATTAAAACATTCTTACACAAAAAGATCAAAAAGTAGCTTTATAA
AAAGTTTGAATATTTGCAGAATTTAGTATTCAAATTTTTGAAATAGACAG
GAAACAGCTGACCAACACACCTGTTTTAATTTCTTTATTTACTACCAGTT
TGCTCAATGACTAAGATACTTCAATTATAAAGATATGTATAAATATATGT
ACATGTATATTAGCCACTTATTTTGCCATAATGTTTTTATTAAGAAATAA
CTGCAAAGGAAGGGCTTCTAATAATGATTAAAATTCCTTTATTAACGAAA
TATTAATTTGATATTTTAATGTTAGTTAATAAATAAATCTTTATCGTATT
ATTTCTTATTTATTAATTCAAATACTTGCAAAGAGCCAATTGATCCCTGC
ATATTGTATAGGCAGATCAATTTGTTTGAATATGAAGAAAACAAGAATAA
AATAGATACTCAAGGATTAATCCTTGCTAGATATCCCCGAATAAAAAAAA
CACAATTTCATGAAATTAAATGAGTTGGTATTTAGATGTACATTTAAAAA
ATACACCATGAAAAAATTAGAGCATTGTTATATACTATTGTTAATAGTAG
TTTCCATAAACTCATCGGATGTATATTTATCTTGAAACAATGTAAAAACA
TCGTTCTGAATATATGTATTTTTTTTTTCAATCAATGAAATACTCTTTTA
TGATAACATTAGTGACTTTATATTTAATTAATGATATATTATTTTCAAAT
TAATTACATCTATTTTAATTTTTTCCAGAGATGTAG
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