EMLSAG00000007610, EMLSAG00000007610-690376 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007610
Unique NameEMLSAG00000007610-690376
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000007610 vs. C. finmarchicus
Match: gi|592954391|gb|GAXK01004162.1| (TSA: Calanus finmarchicus comp254919_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.564e-1
Identity = 19/47 (40.43%), Postives = 26/47 (55.32%), Query Frame = 0 
Query:  198 KSRTAFCNKRVCSYVPYKESCGLKPLQNCQFLPQKQCKYVCSSSWTC 244
            KSR  +   R C +  YK SCG  P + C+  P K+CK  CS+ + C
Sbjct:  559 KSRKCWQKVRQCKWKTYKSSCGNVPTKTCEDKPVKECKRKCSNVYYC 699
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BLAST of EMLSAG00000007610 vs. C. finmarchicus
Match: gi|592954390|gb|GAXK01004163.1| (TSA: Calanus finmarchicus comp254919_c0_seq8 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 1.610e-1
Identity = 19/47 (40.43%), Postives = 26/47 (55.32%), Query Frame = 0 
Query:  198 KSRTAFCNKRVCSYVPYKESCGLKPLQNCQFLPQKQCKYVCSSSWTC 244
            KSR  +   R C +  YK SCG  P + C+  P K+CK  CS+ + C
Sbjct:  559 KSRKCWQKVRQCKWKTYKSSCGNVPTKTCEDKPVKECKRKCSNVYYC 699
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BLAST of EMLSAG00000007610 vs. C. finmarchicus
Match: gi|592954394|gb|GAXK01004159.1| (TSA: Calanus finmarchicus comp254919_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.760e-1
Identity = 19/47 (40.43%), Postives = 26/47 (55.32%), Query Frame = 0 
Query:  198 KSRTAFCNKRVCSYVPYKESCGLKPLQNCQFLPQKQCKYVCSSSWTC 244
            KSR  +   R C +  YK SCG  P + C+  P K+CK  CS+ + C
Sbjct:  559 KSRKCWQKVRQCKWKTYKSSCGNVPTKTCEDKPVKECKRKCSNVYYC 699
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BLAST of EMLSAG00000007610 vs. C. finmarchicus
Match: gi|592954395|gb|GAXK01004158.1| (TSA: Calanus finmarchicus comp254919_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.768e-1
Identity = 19/47 (40.43%), Postives = 26/47 (55.32%), Query Frame = 0 
Query:  198 KSRTAFCNKRVCSYVPYKESCGLKPLQNCQFLPQKQCKYVCSSSWTC 244
            KSR  +   R C +  YK SCG  P + C+  P K+CK  CS+ + C
Sbjct:  559 KSRKCWQKVRQCKWKTYKSSCGNVPTKTCEDKPVKECKRKCSNVYYC 699
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BLAST of EMLSAG00000007610 vs. C. finmarchicus
Match: gi|592954392|gb|GAXK01004161.1| (TSA: Calanus finmarchicus comp254919_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 1.789e-1
Identity = 19/47 (40.43%), Postives = 26/47 (55.32%), Query Frame = 0 
Query:  198 KSRTAFCNKRVCSYVPYKESCGLKPLQNCQFLPQKQCKYVCSSSWTC 244
            KSR  +   R C +  YK SCG  P + C+  P K+CK  CS+ + C
Sbjct:  609 KSRKCWQKVRQCKWKTYKSSCGNVPTKTCEDKPVKECKRKCSNVYYC 749
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BLAST of EMLSAG00000007610 vs. C. finmarchicus
Match: gi|592954393|gb|GAXK01004160.1| (TSA: Calanus finmarchicus comp254919_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 1.828e-1
Identity = 19/47 (40.43%), Postives = 26/47 (55.32%), Query Frame = 0 
Query:  198 KSRTAFCNKRVCSYVPYKESCGLKPLQNCQFLPQKQCKYVCSSSWTC 244
            KSR  +   R C +  YK SCG  P + C+  P K+CK  CS+ + C
Sbjct:  609 KSRKCWQKVRQCKWKTYKSSCGNVPTKTCEDKPVKECKRKCSNVYYC 749
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BLAST of EMLSAG00000007610 vs. C. finmarchicus
Match: gi|592954396|gb|GAXK01004157.1| (TSA: Calanus finmarchicus comp254919_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 2.014e-1
Identity = 19/47 (40.43%), Postives = 26/47 (55.32%), Query Frame = 0 
Query:  198 KSRTAFCNKRVCSYVPYKESCGLKPLQNCQFLPQKQCKYVCSSSWTC 244
            KSR  +   R C +  YK SCG  P + C+  P K+CK  CS+ + C
Sbjct:  609 KSRKCWQKVRQCKWKTYKSSCGNVPTKTCEDKPVKECKRKCSNVYYC 749
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BLAST of EMLSAG00000007610 vs. C. finmarchicus
Match: gi|592954397|gb|GAXK01004156.1| (TSA: Calanus finmarchicus comp254919_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 2.023e-1
Identity = 19/47 (40.43%), Postives = 26/47 (55.32%), Query Frame = 0 
Query:  198 KSRTAFCNKRVCSYVPYKESCGLKPLQNCQFLPQKQCKYVCSSSWTC 244
            KSR  +   R C +  YK SCG  P + C+  P K+CK  CS+ + C
Sbjct:  609 KSRKCWQKVRQCKWKTYKSSCGNVPTKTCEDKPVKECKRKCSNVYYC 749
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BLAST of EMLSAG00000007610 vs. C. finmarchicus
Match: gi|592954389|gb|GAXK01004164.1| (TSA: Calanus finmarchicus comp254919_c0_seq9 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 5.343e-1
Identity = 18/42 (42.86%), Postives = 23/42 (54.76%), Query Frame = 0 
Query:  198 KSRTAFCNKRVCSYVPYKESCGLKPLQNCQFLPQKQCKYVCS 239
            KSR  +   R C +  YK SCG  P + C+  P K+CK  CS
Sbjct:  491 KSRKCWQKVRQCKWKTYKSSCGNVPTKTCEDKPVKECKRKCS 616
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BLAST of EMLSAG00000007610 vs. C. finmarchicus
Match: gi|592768720|gb|GAXK01185848.1| (TSA: Calanus finmarchicus comp44375_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 1.905e+0
Identity = 51/204 (25.00%), Postives = 87/204 (42.65%), Query Frame = 0 
Query:   37 DKVCKETKSCANQCQNVQKEVCNYVNQYVCTTYKRYQCLIQN--LCSQRNPSNESALSKIKNSKNKFLNNVAYGFMNNVRVARCINSTH--CSAKSRSSLPQGPSYQWKSNPTLNSRSKNGYKSGSYNQKSVPRTPMPPLSSDRGTPLSSNSITEY--EKKNNGERQKSRTAFCNKRVCSYVPYKESCGLKPLQNCQFLPQKQC 234
            D VCK   S   QC  V K+VCN +N+  C+T  + QC   N  +C+  +  ++    K   +  +   NV     NNV    C N     C     +     PS +  + P ++ ++K          +SVPR    P++S +   +      +   +K ++  +Q S       ++C+ VP +E C   P   CQ +P ++C
Sbjct:  210 DVVCKTVPS--QQCSTVNKQVCNTINEKKCSTAYKKQCKTVNEKVCAGYDAYHQ---PKCHYAPKQKCENVPVQQCNNVPKQVCKNVPQQVCHPTQENKCQSVPSQRCVNVPVIH-QAKECQSIPRQQCRSVPRKSCQPVTSQQCAEIPQEVCFDVPSQKCDSVPKQIS------TQICNNVP-REFCLSVPRTECQAVPSQRC 782
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BLAST of EMLSAG00000007610 vs. L. salmonis peptides
Match: EMLSAP00000007610 (pep:novel supercontig:LSalAtl2s:LSalAtl2s43:384749:386632:1 gene:EMLSAG00000007610 transcript:EMLSAT00000007610 description:"augustus_masked-LSalAtl2s43-processed-gene-3.2")

HSP 1 Score: 654.44 bits (1687), Expect = 0.000e+0
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0 
Query:    1 MNLFLIVSSLLCICSVNVHSQRCSRHQFLPSPSFTLDKVCKETKSCANQCQNVQKEVCNYVNQYVCTTYKRYQCLIQNLCSQRNPSNESALSKIKNSKNKFLNNVAYGFMNNVRVARCINSTHCSAKSRSSLPQGPSYQWKSNPTLNSRSKNGYKSGSYNQKSVPRTPMPPLSSDRGTPLSSNSITEYEKKNNGERQKSRTAFCNKRVCSYVPYKESCGLKPLQNCQFLPQKQCKYVCSSSWTCCGQETVPTTTPRPPLPFSHGSVPHSAPSALPVFPGPPAPPTDFNVIVGQPSPDFGIPVEDDDDDYDYNEDFVIVEA 320
            MNLFLIVSSLLCICSVNVHSQRCSRHQFLPSPSFTLDKVCKETKSCANQCQNVQKEVCNYVNQYVCTTYKRYQCLIQNLCSQRNPSNESALSKIKNSKNKFLNNVAYGFMNNVRVARCINSTHCSAKSRSSLPQGPSYQWKSNPTLNSRSKNGYKSGSYNQKSVPRTPMPPLSSDRGTPLSSNSITEYEKKNNGERQKSRTAFCNKRVCSYVPYKESCGLKPLQNCQFLPQKQCKYVCSSSWTCCGQETVPTTTPRPPLPFSHGSVPHSAPSALPVFPGPPAPPTDFNVIVGQPSPDFGIPVEDDDDDYDYNEDFVIVEA
Sbjct:    1 MNLFLIVSSLLCICSVNVHSQRCSRHQFLPSPSFTLDKVCKETKSCANQCQNVQKEVCNYVNQYVCTTYKRYQCLIQNLCSQRNPSNESALSKIKNSKNKFLNNVAYGFMNNVRVARCINSTHCSAKSRSSLPQGPSYQWKSNPTLNSRSKNGYKSGSYNQKSVPRTPMPPLSSDRGTPLSSNSITEYEKKNNGERQKSRTAFCNKRVCSYVPYKESCGLKPLQNCQFLPQKQCKYVCSSSWTCCGQETVPTTTPRPPLPFSHGSVPHSAPSALPVFPGPPAPPTDFNVIVGQPSPDFGIPVEDDDDDYDYNEDFVIVEA 320
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BLAST of EMLSAG00000007610 vs. L. salmonis peptides
Match: EMLSAP00000004678 (pep:novel supercontig:LSalAtl2s:LSalAtl2s244:212611:229577:-1 gene:EMLSAG00000004678 transcript:EMLSAT00000004678 description:"maker-LSalAtl2s244-snap-gene-2.7")

HSP 1 Score: 394.045 bits (1011), Expect = 5.890e-136
Identity = 228/324 (70.37%), Postives = 255/324 (78.70%), Query Frame = 0 
Query:    7 VSSLLCICSVNVHSQRCSRHQFLPSPSFTLDKVCKETKSCANQCQNVQKEVCNYVNQYVCTTYKRYQCLIQNLCSQRNPSNES----ALSKIKNSKNKFLNNVAYGFMNNVRVARCINSTHCSAKSRSSLPQGPS-----YQWKSNPTLNSRSKNGYKSGSYNQKSVPRTPMPPLSSDRGTPLSSNSITEYEKKNNGERQKSRTAFCNKRVCSYVPYKESCGLKPLQNCQFLPQKQCKYVCSSSWTCCGQETVPTTTPRPPLPFSHGSVPHSAPSALPVFPGPPAPPTDFNVIVGQPSPDFGIPV-EDDDDDYDYNEDFVIVEA 320
            VSSLLCI S+NV SQRCSRH FLP PSFT+ KVCKETKSC NQCQ+ QKEVCNYVN+YVCTTYKRYQC+ QN C QRN SN S     L+KI N K KFL NV  G MN VR ARC++S HCSAKS +SLPQGPS     YQWKSNP LN R KN    GSYNQKSV   PMPPLSS+R T LSSNSI EY KKN+GE QK+RT+ CN++VC+YVPYKESCGLKP   CQ+LPQK+CK+VCSSSWTCCGQETV TTTPRPP      S+P   P A P+ PGPPAPPTDFN+IVG PSPD GIP+ +D DD+YDY+EDF+IVEA
Sbjct:   51 VSSLLCIFSINVQSQRCSRHAFLPEPSFTIGKVCKETKSCTNQCQSFQKEVCNYVNEYVCTTYKRYQCVTQNSCPQRNQSNISKHNGVLTKIMNGKKKFLRNVVNGIMNKVRKARCVHSRHCSAKSSASLPQGPSSEGVQYQWKSNPALNIRKKNRSSPGSYNQKSVSIKPMPPLSSNRDTSLSSNSIPEYTKKNHGEAQKTRTSSCNEQVCTYVPYKESCGLKPRHKCQYLPQKECKFVCSSSWTCCGQETVFTTTPRPPFSLPQSSIPPIGPPAPPISPGPPAPPTDFNIIVGPPSPDVGIPLEDDYDDNYDYDEDFLIVEA 374
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007610 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007610 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 15
Match NameE-valueIdentityDescription
gi|592954391|gb|GAXK01004162.1|1.564e-140.43TSA: Calanus finmarchicus comp254919_c0_seq7 trans... [more]
gi|592954390|gb|GAXK01004163.1|1.610e-140.43TSA: Calanus finmarchicus comp254919_c0_seq8 trans... [more]
gi|592954394|gb|GAXK01004159.1|1.760e-140.43TSA: Calanus finmarchicus comp254919_c0_seq4 trans... [more]
gi|592954395|gb|GAXK01004158.1|1.768e-140.43TSA: Calanus finmarchicus comp254919_c0_seq3 trans... [more]
gi|592954392|gb|GAXK01004161.1|1.789e-140.43TSA: Calanus finmarchicus comp254919_c0_seq6 trans... [more]
gi|592954393|gb|GAXK01004160.1|1.828e-140.43TSA: Calanus finmarchicus comp254919_c0_seq5 trans... [more]
gi|592954396|gb|GAXK01004157.1|2.014e-140.43TSA: Calanus finmarchicus comp254919_c0_seq2 trans... [more]
gi|592954397|gb|GAXK01004156.1|2.023e-140.43TSA: Calanus finmarchicus comp254919_c0_seq1 trans... [more]
gi|592954389|gb|GAXK01004164.1|5.343e-142.86TSA: Calanus finmarchicus comp254919_c0_seq9 trans... [more]
gi|592768720|gb|GAXK01185848.1|1.905e+025.00TSA: Calanus finmarchicus comp44375_c0_seq6 transc... [more]

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BLAST of EMLSAG00000007610 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000076100.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s43:384749... [more]
EMLSAP000000046785.890e-13670.37pep:novel supercontig:LSalAtl2s:LSalAtl2s244:21261... [more]
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BLAST of EMLSAG00000007610 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007610 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007610 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007610 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s43supercontigLSalAtl2s43:384749..386632 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s43-processed-gene-3.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007610 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007610EMLSAT00000007610-703457Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s43:384749..386632+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007610-690376 ID=EMLSAG00000007610-690376|Name=EMLSAG00000007610|organism=Lepeophtheirus salmonis|type=gene|length=1884bp|location=Sequence derived from alignment at LSalAtl2s43:384749..386632+ (Lepeophtheirus salmonis)
AAAAATCCTACTTGCTAAAACAGAAAAACGGACCCCATTGCTGTAAAACC
ATTGGTACAAGAATCCTACATAACTTCAAAGAGAACAAACGCTTTAAGTA
GGATAGTCGGCTGTTAATTATTCACCTACCCATACATAAATTTGAGGAGG
CATGCCCAAGATTGATATATTGTAACTCATATTTTTTTCTTCGTTATTTG
TTAGATTAGGATATTACTCATTATAGATAGGCGTCTTGATAACTAGTTCG
ATTATATTACTGTAAAAATGAATTTATTTTTAATCGTAAGTTTCTCACTT
AATTTTTCATTTTAGTATAACATTTTTTTCAATAGCAAAATTAAATTTTG
AGCAAAATAATAAACTAATACATTGGGGTTGCTTAGAGATTCATATTTGT
TTGGTTATAAATTGTTTATTTCAAGATTTTAAGATGGATTACAAATATAG
ATACATTAACTGAATGTATCTAAGACTATATTTAACTTATTCATTAAAAT
GTTTTAGTAACAGCAGTTTTTAAATTTTCTCGGGGTAATTAGTTATATTT
TTAGAAAATAAATTATATACATGATTCAAATATATTTTTTGTTAGGTTTC
TTCACTACTATGTATCTGCTCAGTCAATGTCCATAGTCAAAGGTGCTCAA
GACATCAGTTCCTTCCTTCACCAAGTTTTACGCTGGATAAAGTATGCAAG
GAAACAAAGAGTTGCGCAAATCAGTGCCAAAATGTTCAAAAAGAAGTTTG
TAATTATGTGAATCAATATGTGTGTACTACTTATAAAAGATATCAGTGCC
TTATTCAAAATTTATGTTCTCAAAGAAACCCATCGAATGAAAGTGCCCTT
AGTAAAATAAAGAATAGTAAAAATAAATTTCTAAACAATGTTGCGTATGG
TTTTATGAACAACGTGAGGGTTGCTAGGTGTATTAATTCAACGCATTGCT
CAGCCAAATCCCGATCTTCCCTTCCTCAAGGTCCTTCATACCAATGGAAA
TCAAATCCAACACTCAATAGTAGAAGTAAAAATGGATACAAATCAGGATC
TTACAATCAAAAGTCTGTTCCGAGGACACCTATGCCTCCTTTGTCCTCTG
ATAGGGGCACGCCCCTTTCTTCAAACTCCATCACGGAGTACGAAAAAAAG
AATAATGGAGAACGTCAAAAATCACGGACTGCTTTTTGTAATAAACGAGT
GTGCTCTTACGTACCTTACAAAGAATCATGTGGACTCAAACCCCTTCAAA
ACTGTCAATTTCTTCCTCAAAAGCAATGCAAATATGTATGTTCTAGTTCA
TGGACATGCTGYGGACAAGAAACAGTCCCCACAACTACACCCCGACCCCC
TCTTCCATTCTCACATGGCTCCGTTCCTCATTCAGCCCCATCAGCACTAC
CAGTCTTCCCGGGTCCACCCGCTCCACCTACGGATTTTAATGTTATTGTT
GGACAGCCATCTCCAGATTTTGGAATTCCTGTCGAGGATGATGACGACGA
TTACGACTACAATGAAGATTTTGTCATCGTTGAAGCATAACAAATATAAA
AGTTGTAATATTTTTAAACTTGAATCAAGAAGTCTCATATTAATTACATA
TTTTTTCAATAGGCCTTATTAATGGGTATGCATTAAATTAGCGACATTAA
CTCTTAACCAGATTTACCTTACTTTGATATGTTCTTTATACCTAAGTACA
TCATTATATCTGCATTGATAATAAAAAAAACAATCCTTGAGTATCTATCT
TTTGACTCCTTCATTGCTCGAATGGTTTTATTTAGTCAGAGAAGTATTGT
ATGGATATCACGACCTTAACACATCAGCACAAAATTATCTACATCATATT
TTGTTTTCAGATCTCGATTTTTCTGATTCTTTTG
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