EMLSAG00000007860, EMLSAG00000007860-690626 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007860
Unique NameEMLSAG00000007860-690626
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000007860 vs. C. finmarchicus
Match: gi|592790249|gb|GAXK01164319.1| (TSA: Calanus finmarchicus comp663112_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 41.9726 bits (97), Expect = 5.345e-4
Identity = 22/75 (29.33%), Postives = 47/75 (62.67%), Query Frame = 0 
Query:   93 KIRMTSPKELIKNPLQVNKEILKFMLEKVFISPRGQLSIE-KEQIGMYIFQKMGSLGLIMYMQSF-YEGVPVIYK 165
            ++ +   K + +NP +++KE L   + +VF  P     +E  E++G ++++K+G +GL++Y+Q+F Y+ +  IY 
Sbjct:  540 ELHIQEDKLVSENPQKISKEALWLNIRRVFSQPS---PVEGNEKVGTFLYRKLGRIGLVLYLQTFRYKSMRDIYN 755
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BLAST of EMLSAG00000007860 vs. C. finmarchicus
Match: gi|592864093|gb|GAXK01093469.1| (TSA: Calanus finmarchicus comp1881735_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.0466 bits (92), Expect = 2.112e-3
Identity = 22/52 (42.31%), Postives = 29/52 (55.77%), Query Frame = 0 
Query:  106 PLQVNKEILKFMLEKVFISPRGQ-LSIEKEQIGMYIFQKMGSLGLIMYMQSF 156
            PL+V+  +   +L +VF  PR Q  S    Q G Y+F K G LGL + MQ F
Sbjct: 1438 PLKVSTMLQHLLLRRVFSLPRDQETSPHYHQAGTYLFSKFGRLGLFVQMQRF 1593
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BLAST of EMLSAG00000007860 vs. C. finmarchicus
Match: gi|592757073|gb|GAXK01197340.1| (TSA: Calanus finmarchicus comp345201_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 1.325e-1
Identity = 21/54 (38.89%), Postives = 28/54 (51.85%), Query Frame = 0 
Query:  105 NPLQVNKEILKFMLEKVFISPRG--QLSIEKEQIGMYIFQKMGSLGLIMYMQSF 156
            +P  V+K  L  MLE  F  PR   + +   + IG YI +K G LGL+   Q F
Sbjct:  315 DPHLVDKSHLVLMLENTFTLPRHVERNATLTDSIGQYITRKFGKLGLLTGTQLF 476
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BLAST of EMLSAG00000007860 vs. C. finmarchicus
Match: gi|592757074|gb|GAXK01197339.1| (TSA: Calanus finmarchicus comp345201_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 1.609e-1
Identity = 21/54 (38.89%), Postives = 28/54 (51.85%), Query Frame = 0 
Query:  105 NPLQVNKEILKFMLEKVFISPRG--QLSIEKEQIGMYIFQKMGSLGLIMYMQSF 156
            +P  V+K  L  MLE  F  PR   + +   + IG YI +K G LGL+   Q F
Sbjct:  465 DPHLVDKSHLVLMLENTFTLPRHVERNATLTDSIGQYITRKFGKLGLLTGTQLF 626
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BLAST of EMLSAG00000007860 vs. C. finmarchicus
Match: gi|592823049|gb|GAXK01131519.1| (TSA: Calanus finmarchicus comp160087_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 2.552e-1
Identity = 24/88 (27.27%), Postives = 42/88 (47.73%), Query Frame = 0 
Query:   38 QLHDPSRDLINPIYNKILPFKDTFMEV-NFFKDLSVTQGPGLVYVDLFAKSYPMEKKIRMTSPKELIKNPLQVNKEILKFMLEKVFIS 124
            ++ D  +D  + I  + +P++ T MEV  FF+D  +  GP  +Y  L  K  P  +       +  I   L+ +KE++     +VF S
Sbjct:  697 KMGDTMKDDPSVIKIRGMPYEATAMEVCRFFRDCDIVGGPNGIYFCLNDKGLPTGEAFIEMETQSDIDKALEKHKEMMGKRYIEVFES 960
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BLAST of EMLSAG00000007860 vs. C. finmarchicus
Match: gi|592823050|gb|GAXK01131518.1| (TSA: Calanus finmarchicus comp160087_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 2.635e-1
Identity = 24/88 (27.27%), Postives = 42/88 (47.73%), Query Frame = 0 
Query:   38 QLHDPSRDLINPIYNKILPFKDTFMEV-NFFKDLSVTQGPGLVYVDLFAKSYPMEKKIRMTSPKELIKNPLQVNKEILKFMLEKVFIS 124
            ++ D  +D  + I  + +P++ T MEV  FF+D  +  GP  +Y  L  K  P  +       +  I   L+ +KE++     +VF S
Sbjct:  834 KMGDTMKDDPSVIKIRGMPYEATAMEVCRFFRDCDIVGGPNGIYFCLNDKGLPTGEAFIEMETQSDIDKALEKHKEMMGKRYIEVFES 1097
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BLAST of EMLSAG00000007860 vs. C. finmarchicus
Match: gi|592823048|gb|GAXK01131520.1| (TSA: Calanus finmarchicus comp160087_c2_seq4 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 2.888e-1
Identity = 21/71 (29.58%), Postives = 34/71 (47.89%), Query Frame = 0 
Query:   55 LPFKDTFMEV-NFFKDLSVTQGPGLVYVDLFAKSYPMEKKIRMTSPKELIKNPLQVNKEILKFMLEKVFIS 124
            +P++ T MEV  FF+D  +  GP  +Y  L  K  P  +       +  I   L+ +KE++     +VF S
Sbjct:   83 MPYEATAMEVCRFFRDCDIVGGPNGIYFCLNDKGLPTGEAFIEMETQSDIDKALEKHKEMMGKRYIEVFES 295
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BLAST of EMLSAG00000007860 vs. C. finmarchicus
Match: gi|592823051|gb|GAXK01131517.1| (TSA: Calanus finmarchicus comp160087_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 3.074e-1
Identity = 24/88 (27.27%), Postives = 42/88 (47.73%), Query Frame = 0 
Query:   38 QLHDPSRDLINPIYNKILPFKDTFMEV-NFFKDLSVTQGPGLVYVDLFAKSYPMEKKIRMTSPKELIKNPLQVNKEILKFMLEKVFIS 124
            ++ D  +D  + I  + +P++ T MEV  FF+D  +  GP  +Y  L  K  P  +       +  I   L+ +KE++     +VF S
Sbjct: 3216 KMGDTMKDDPSVIKIRGMPYEATAMEVCRFFRDCDIVGGPNGIYFCLNDKGLPTGEAFIEMETQSDIDKALEKHKEMMGKRYIEVFES 3479
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BLAST of EMLSAG00000007860 vs. C. finmarchicus
Match: gi|592823954|gb|GAXK01130614.1| (TSA: Calanus finmarchicus comp178743_c6_seq7 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 4.793e+0
Identity = 15/45 (33.33%), Postives = 23/45 (51.11%), Query Frame = 0 
Query:  103 IKNPLQVNKEILKFMLEKVFISPRGQLSIEKEQIGMYIFQKMGSL 147
            I N   V++E+  FM E V +   GQ+   K Q+  ++    GSL
Sbjct:   36 IVNNQHVHQEVCAFMHEHVHLILVGQIQ*SKHQLNWFVCPPQGSL 170
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BLAST of EMLSAG00000007860 vs. C. finmarchicus
Match: gi|592776956|gb|GAXK01177612.1| (TSA: Calanus finmarchicus comp279294_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 6.095e+0
Identity = 22/69 (31.88%), Postives = 32/69 (46.38%), Query Frame = 0 
Query:   82 DLFAKSYPMEKKI------RMTSPKELIKNPLQVNKEILKFMLEKVFISPRGQLSIEKEQIGMYIFQKM 144
            DLFA   P  K++      +   P + IK P +     L F+ E+ F  P G++  E E+  M   QKM
Sbjct:  489 DLFAPFAPSRKELVFMGIRKNRRPDKEIKTPTEP---CLAFLKERKFCEPEGEIKKEMERRRMVREQKM 686
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BLAST of EMLSAG00000007860 vs. L. salmonis peptides
Match: EMLSAP00000007860 (pep:novel supercontig:LSalAtl2s:LSalAtl2s45:966813:967723:-1 gene:EMLSAG00000007860 transcript:EMLSAT00000007860 description:"maker-LSalAtl2s45-snap-gene-8.84")

HSP 1 Score: 348.591 bits (893), Expect = 1.331e-123
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0 
Query:    1 MHRRSLIILSLPLWTYYVGSHVIPSLKDDSIVFPYRAQLHDPSRDLINPIYNKILPFKDTFMEVNFFKDLSVTQGPGLVYVDLFAKSYPMEKKIRMTSPKELIKNPLQVNKEILKFMLEKVFISPRGQLSIEKEQIGMYIFQKMGSLGLIMYMQSFYEGVPVIYKDGKIAKE 172
            MHRRSLIILSLPLWTYYVGSHVIPSLKDDSIVFPYRAQLHDPSRDLINPIYNKILPFKDTFMEVNFFKDLSVTQGPGLVYVDLFAKSYPMEKKIRMTSPKELIKNPLQVNKEILKFMLEKVFISPRGQLSIEKEQIGMYIFQKMGSLGLIMYMQSFYEGVPVIYKDGKIAKE
Sbjct:    1 MHRRSLIILSLPLWTYYVGSHVIPSLKDDSIVFPYRAQLHDPSRDLINPIYNKILPFKDTFMEVNFFKDLSVTQGPGLVYVDLFAKSYPMEKKIRMTSPKELIKNPLQVNKEILKFMLEKVFISPRGQLSIEKEQIGMYIFQKMGSLGLIMYMQSFYEGVPVIYKDGKIAKE 172
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007860 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007860 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 12
Match NameE-valueIdentityDescription
gi|592790249|gb|GAXK01164319.1|5.345e-429.33TSA: Calanus finmarchicus comp663112_c2_seq1 trans... [more]
gi|592864093|gb|GAXK01093469.1|2.112e-342.31TSA: Calanus finmarchicus comp1881735_c0_seq1 tran... [more]
gi|592757073|gb|GAXK01197340.1|1.325e-138.89TSA: Calanus finmarchicus comp345201_c0_seq2 trans... [more]
gi|592757074|gb|GAXK01197339.1|1.609e-138.89TSA: Calanus finmarchicus comp345201_c0_seq1 trans... [more]
gi|592823049|gb|GAXK01131519.1|2.552e-127.27TSA: Calanus finmarchicus comp160087_c2_seq3 trans... [more]
gi|592823050|gb|GAXK01131518.1|2.635e-127.27TSA: Calanus finmarchicus comp160087_c2_seq2 trans... [more]
gi|592823048|gb|GAXK01131520.1|2.888e-129.58TSA: Calanus finmarchicus comp160087_c2_seq4 trans... [more]
gi|592823051|gb|GAXK01131517.1|3.074e-127.27TSA: Calanus finmarchicus comp160087_c2_seq1 trans... [more]
gi|592823954|gb|GAXK01130614.1|4.793e+033.33TSA: Calanus finmarchicus comp178743_c6_seq7 trans... [more]
gi|592776956|gb|GAXK01177612.1|6.095e+031.88TSA: Calanus finmarchicus comp279294_c3_seq1 trans... [more]

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BLAST of EMLSAG00000007860 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000078601.331e-123100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s45:966813... [more]
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BLAST of EMLSAG00000007860 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007860 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007860 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007860 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s45supercontigLSalAtl2s45:966813..967723 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s45-snap-gene-8.84
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007860 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007860EMLSAT00000007860-703707Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s45:966813..967723-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007860-690626 ID=EMLSAG00000007860-690626|Name=EMLSAG00000007860|organism=Lepeophtheirus salmonis|type=gene|length=911bp|location=Sequence derived from alignment at LSalAtl2s45:966813..967723- (Lepeophtheirus salmonis)
ATGCATCGGAGGTCTCTTATTATTTTGTCCCTACCACTTTGGACTTATTA
TGTGGGTTCCCATGGTAGGTTTTTAGTATATCCCTTACATTGGCTTAACT
TTAAAATTGAATACCCCTTATAGTGATTGCCGATGGACCTCCAAATCATA
CGAGTAAATTCTCAATCTCCTCAGAGAATACTACGGGTAAGTGTTATAAT
AAATCTGTGAGGGTGGTCTGAAAAGTTTCTGGAATCAACGACAAGATAGA
AGCATTTGTAAATAAAAGCTTGTCACATACATTTACATACACATAATAGA
TGTGCCATATTTTCATTTACGAGTGATGGCATCTTTACGTTGAGGTCAGA
AACCATTCACATCATCTGTGTATATGATTTTATAATGTATTTATTTTTTC
TTCCTTTAAAGATTTTGAGGGCTTCATTCGAAACTTTACTCAACGCTATT
TGACTCCAGTGATCCCCAGTTTAAAAGATGATTCCATTGTATTCCCATAC
CGTGCTCAACTTCATGATCCCTCACGAGACCTCATCAATCCCATTTACAA
CAAAATTCTTCCATTTAAAGACACATTTATGGAAGTAAACTTTTTCAAGG
ACTTAAGTGTCACTCAGGGTCCTGGTCTTGTTTATGTTGATTTATTTGCA
AAATCATATCCAATGGAAAAGAAGATTCGAATGACTTCACCAAAGGAGTT
GATTAAAAATCCACTACAAGTGAACAAAGAAATCTTAAAATTTATGCTCG
AGAAGGTTTTTATTTCTCCTAGAGGTCAACTCTCCATTGAGAAAGAACAG
ATTGGCATGTACATATTTCAAAAAATGGGTTCTTTAGGGCTCATAATGTA
TATGCAGTCATTTTATGAAGGTGTTCCAGTCATTTATAAAGATGGGAAAA
TTGCCAAGGAA
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