EMLSAG00000007909, EMLSAG00000007909-690675 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007909
Unique NameEMLSAG00000007909-690675
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000007909 vs. C. finmarchicus
Match: gi|592928667|gb|GAXK01029878.1| (TSA: Calanus finmarchicus comp932952_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.285e+0
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 0 
Query:   28 NKNADATSKKLGSLSQISLIWNRVSEKQNMN 58
            NK++  +SK   S+S +SL W  VSE + ++
Sbjct:   51 NKSSRFSSKLFSSVSPLSLYWPLVSESRTLS 143
[Close]
BLAST of EMLSAG00000007909 vs. C. finmarchicus
Match: gi|592928672|gb|GAXK01029873.1| (TSA: Calanus finmarchicus comp932952_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.285e+0
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 0 
Query:   28 NKNADATSKKLGSLSQISLIWNRVSEKQNMN 58
            NK++  +SK   S+S +SL W  VSE + ++
Sbjct: 1632 NKSSRFSSKLFSSVSPLSLYWPLVSESRTLS 1724
[Close]
BLAST of EMLSAG00000007909 vs. C. finmarchicus
Match: gi|592928673|gb|GAXK01029872.1| (TSA: Calanus finmarchicus comp932952_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.285e+0
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 0 
Query:   28 NKNADATSKKLGSLSQISLIWNRVSEKQNMN 58
            NK++  +SK   S+S +SL W  VSE + ++
Sbjct: 1632 NKSSRFSSKLFSSVSPLSLYWPLVSESRTLS 1724
[Close]
BLAST of EMLSAG00000007909 vs. C. finmarchicus
Match: gi|592928674|gb|GAXK01029871.1| (TSA: Calanus finmarchicus comp932952_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.285e+0
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 0 
Query:   28 NKNADATSKKLGSLSQISLIWNRVSEKQNMN 58
            NK++  +SK   S+S +SL W  VSE + ++
Sbjct: 1633 NKSSRFSSKLFSSVSPLSLYWPLVSESRTLS 1725
[Close]
BLAST of EMLSAG00000007909 vs. C. finmarchicus
Match: gi|592928668|gb|GAXK01029877.1| (TSA: Calanus finmarchicus comp932952_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.288e+0
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 0 
Query:   28 NKNADATSKKLGSLSQISLIWNRVSEKQNMN 58
            NK++  +SK   S+S +SL W  VSE + ++
Sbjct:   51 NKSSRFSSKLFSSVSPLSLYWPLVSESRTLS 143
[Close]
BLAST of EMLSAG00000007909 vs. C. finmarchicus
Match: gi|592928675|gb|GAXK01029870.1| (TSA: Calanus finmarchicus comp932952_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.288e+0
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 0 
Query:   28 NKNADATSKKLGSLSQISLIWNRVSEKQNMN 58
            NK++  +SK   S+S +SL W  VSE + ++
Sbjct: 1640 NKSSRFSSKLFSSVSPLSLYWPLVSESRTLS 1732
[Close]
BLAST of EMLSAG00000007909 vs. C. finmarchicus
Match: gi|592928669|gb|GAXK01029876.1| (TSA: Calanus finmarchicus comp932952_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.291e+0
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 0 
Query:   28 NKNADATSKKLGSLSQISLIWNRVSEKQNMN 58
            NK++  +SK   S+S +SL W  VSE + ++
Sbjct:   75 NKSSRFSSKLFSSVSPLSLYWPLVSESRTLS 167
[Close]
BLAST of EMLSAG00000007909 vs. C. finmarchicus
Match: gi|592928670|gb|GAXK01029875.1| (TSA: Calanus finmarchicus comp932952_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.291e+0
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 0 
Query:   28 NKNADATSKKLGSLSQISLIWNRVSEKQNMN 58
            NK++  +SK   S+S +SL W  VSE + ++
Sbjct:   75 NKSSRFSSKLFSSVSPLSLYWPLVSESRTLS 167
[Close]
BLAST of EMLSAG00000007909 vs. L. salmonis peptides
Match: EMLSAP00000007909 (pep:novel supercontig:LSalAtl2s:LSalAtl2s467:406994:410879:1 gene:EMLSAG00000007909 transcript:EMLSAT00000007909 description:"snap_masked-LSalAtl2s467-processed-gene-3.10")

HSP 1 Score: 143.665 bits (361), Expect = 5.179e-46
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 
Query:    1 MLHNVEPSFSAGLTTIKLKNHNCVQEGNKNADATSKKLGSLSQISLIWNRVSEKQNMNSKTSGLSIKVKNF 71
            MLHNVEPSFSAGLTTIKLKNHNCVQEGNKNADATSKKLGSLSQISLIWNRVSEKQNMNSKTSGLSIKVKNF
Sbjct:    1 MLHNVEPSFSAGLTTIKLKNHNCVQEGNKNADATSKKLGSLSQISLIWNRVSEKQNMNSKTSGLSIKVKNF 71
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007909 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007909 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592928667|gb|GAXK01029878.1|7.285e+038.71TSA: Calanus finmarchicus comp932952_c1_seq4 trans... [more]
gi|592928672|gb|GAXK01029873.1|7.285e+038.71TSA: Calanus finmarchicus comp932952_c0_seq4 trans... [more]
gi|592928673|gb|GAXK01029872.1|7.285e+038.71TSA: Calanus finmarchicus comp932952_c0_seq3 trans... [more]
gi|592928674|gb|GAXK01029871.1|7.285e+038.71TSA: Calanus finmarchicus comp932952_c0_seq2 trans... [more]
gi|592928668|gb|GAXK01029877.1|7.288e+038.71TSA: Calanus finmarchicus comp932952_c1_seq3 trans... [more]
gi|592928675|gb|GAXK01029870.1|7.288e+038.71TSA: Calanus finmarchicus comp932952_c0_seq1 trans... [more]
gi|592928669|gb|GAXK01029876.1|7.291e+038.71TSA: Calanus finmarchicus comp932952_c1_seq2 trans... [more]
gi|592928670|gb|GAXK01029875.1|7.291e+038.71TSA: Calanus finmarchicus comp932952_c1_seq1 trans... [more]
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BLAST of EMLSAG00000007909 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000079095.179e-46100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s467:40699... [more]
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BLAST of EMLSAG00000007909 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007909 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007909 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007909 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s467supercontigLSalAtl2s467:406994..410879 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s467-processed-gene-3.10
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007909 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007909EMLSAT00000007909-703756Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s467:406994..410879+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007909-690675 ID=EMLSAG00000007909-690675|Name=EMLSAG00000007909|organism=Lepeophtheirus salmonis|type=gene|length=3886bp|location=Sequence derived from alignment at LSalAtl2s467:406994..410879+ (Lepeophtheirus salmonis)
ATGCTTCATAATGTGGAGCCCAGGTGCATTAAATTCCCTTTTGAACCATT
GTTTCGCTACTAACTAAGTGTATGTCATTAGTATTCTATGAATAACAGTG
TGACTATTTTATCAGTTATTGTGTTAAGTTTGACACTACTTATGTTATAT
TGAAACCAATGGATCAAAAAAAAAAAAATCAAAATCCGTTGCTATTCACA
GAAAATTATTGTTTTTAGTAAAATTAAAGTTTCTGGAAAAAAATTTCACA
ATACCAAATATTCCATGTGATTCTCAAATCATTGAAAGAAATATAGCATC
AACAAGGAAGGACTCCTAGAAAACATATCATAGAGAGAAAAGACACAAAA
AATTTAATTTTTAAAAATCACTCAAGATCAAAATTGAATAAAAACTTTCA
AAAGTTTGAGGTCATGAATTAATTTACTGATTATTCAAAGATTTAGAAAC
TATGTATATCTATCACCTTTGTATCTTGTTCTTGAAAAAATTTAATTATA
GAAATAGCTGAATAAATAGAAAATCCATAATTATTTCATTATATTTGTAT
ACCGTCAATAGTTACTTCATGAGTTTTTACCTAAAAAAACCAACTACATA
ATAAAGTCAAAAAAATTCCTAACAAATTCAAAAAAGACATAAAATAAGTT
TTTCTTTTCTTTTGCCTTAATTAAAGATAGATTTTTGTCTATTTTTAACT
TTATTTCATATTGAAGTACTTTCGGAACACTGGAACTTTAACCGGACGGA
GGTAACGGTTTTTGATGGCACAGAAGAAATAATTAAGAGGTCATTACCAA
CAACTACACACATGATTCATGATAATTTTGAATTTGGTCAACTTTAAAAA
ATAGCGAACACTCTACTGTACACATTAGCCTTTACCCATATATTGGGAGA
CAGTTGCAGCCCTACTTTTGTATAGCTCACTCATTGGGACATAGACACAC
TAAAATTTAACATGACATACACACAGTGCGGCTAAACAAATATTGAACTC
TCGTACTCGTGGAGTACTTGAATCTAAGGATATATATCACGTCGTTACTT
TTATTGTACCACACAACCTTTCATGCAAAAAGACACAGAAAAAGGCTCAA
AATCAGCTTGAAGTTCCCCAATTCTTCCTGACTATTATACAACTATTAAT
CAATACTTGTTTTGGAGTATTCATAGATAAACAAGAGCTAATTTTATTCC
AACCAATCAACGATCAAAAGAAAAGAAATAGAAACTTTGAAAGTCTACAT
CAAAATACAGTGTCAAATTTTGTGTTCGTGAGGTAAGGCCGTGACATAGG
TAGGGAAAGGAAACTTTGTAAACGGTGTTCTATTGTATAATTACAACTTA
AATTGAACAACCTTTGATGGCTACCATGGGCTCTATTCGGCGACTGAAGG
CCTTGTAGACATTCGCCTCATCGGACATGGCAGCACACTACCTAAGCGAT
GGCTCTTAGATCATTCACGTTCCTGTGGAAAGACTTGCAGGCCTTCTGTG
CTACTAATTAGCCCAGATTACGTAGTCGATGGCTGGACCGTCAGAAGGGG
ATGGGGACCTCATGTTGGAGGGCCATAATTGAATGAGGCTCTTCTTGCAC
CAATTTTGGGTTACTATTATTTACTGGCGCGGATGTCATAGATGNNNNNN
NNNNNNNNNTTCTTAGATCTCGACAATCTTGCACTTAGGCACTTGGGCTT
GAATAAAATCGATCACTCTTTGTCTTTTTGACTCCTCCATTGCAAGGCTA
CTTCTTATGACTTTGACGGCACTATTAAAGTTATGCAACGAAACCTCCTC
AATCAAATTAAGATTGCAGAAGGAGGATAAAGCAAGTTTATTACCATAAC
CAAGAGTGCCGATTTTAGGTAACCTATTAACCTTGTTATTGATTAGGTTG
GCCTGTTAATGATTGAATATATTTAAAGATCATATATTTCCCATAAATTG
CATTTGCAATACCAGAGGTGATTGCAATTACGGTTAGGGACGGTGACAAC
AGATAACGAAATTTGATTAAGAGAAATAGACTAAATAATATTTTTGACGA
ATAACAACTGGATTAATACACGATAACTAGGGCTGAGGTTTTTGTAATGA
AAAAAACACTGTTTAGATAATCGAATGAAACAACTAAATTAAAAATGTGA
ATTAGACCGGGTCATTTGTGACTTTTTTTTTTTTTGAAAAGTTTTAAAAG
GTCGCCCAAAGTCCTTATTTTTGGAAATTGACATTTTTTCGATAATTTTG
TGTTCTTCTTTTCATATCTTCCAACCACCAGCAGATATGATTAACTGTAT
TAATATAACTTTTTTCACATAAGTAACTTCTCTTTGAAAAATATTTAAAT
TACTTTGTTCTTAAATTAGTTTCTTTGATTTTAAAATTTTAAACGGTATA
GGGGTGAAGGATATTGGATTCGGATGGCAAATTGTTGAAAAAAAGTCTAC
GTTTTAGTATTCAAAAGTATATATATATATAATATTTGTAGGGGCATCCA
CAGGATTATATATTTTTGTGTATGGGGGGGGGGGGAATTTGATCAAATAA
TTTTTTTTTAAATAAATCCTCTAAAAAAATTTCCCCAGATTTCCCCATTA
CATTTTTTTCTTATTAAGGGATAATTTTTCATAAGTTAATACAAAAATTC
CTTAATTTTGGGGAAGGGAAGGACGCCCCTGATTTGAAATGAAAAAGTTA
TGGGCTGAAAACTAAAATATACGCATTTGAACCCATCCTATCATACACGG
CATATAAACTGACAGATATTTATAAAAACTAAATGCTTTTTGCTATCTAA
TACGCTTGAATGTTCTAAATGAGGATAAATAAGTCATAAGTGGACTAATA
TCATGCAGGTTAACAACATATACTTTTTTAAATGTATGTTCAGGAAACTT
TCCACAATTTCATATCCCTAGTTATTACTCACAAGTCACATTTAAAGTCA
TTATTTTATTTAGTCAACTCTAATGCGTCTAGACGACTTCTTTTTTATGC
TTACTTTATGCACTAGTAATCAGGACCTTTCCCACAGGGGAGGAGTAACC
ACTCAGCCTTTTTGGAGTATTAGAGTTGTTAAAAATTGTATTTTTTTCGA
TGAATTGTGCAAACTTTCTTTTAAAAATCTGCATATAAAATTGGGGACTC
TTTGAAAAAAGGACCCGTGTATACAATAAAAACTTAGGAGGTAAATTGAT
GAGTTTATTTTTATAAAATATTTTGTCAATATTTATTTTCGACGGTAAAA
GTACGTTCCTCACTAGTCCATTGCACGATAGCTACTGACTGTATCTCACA
AAAAAACTTTATAATCTCTCTGATAGAATAAAACCACGCCAATCCCGCAT
TATAAAAAATATTTAAATTTTAGATTTGGTACATGAATCGATATTAACTT
AGAACAATATATAATAACTTGAGTATTATTGTCTTTATTTTCCTAGATAT
ATTAACAATAATTTAAATTCTAGCAATAATAAAGAGAATAGAAGTTTTAG
GCTTTAAGAATAGCCTTACATACATACATTTTCAAACACTATAAATATTC
TTATATCAAGAAACAATTATTCACATGTAGTTATTTATTACTTATTCCTT
CTTCAGCTTCTCTGCCGGCTTGACAACCATAAAATTAAAGAACCATAACT
GTGTCCAAGAAGGCAATAAAAATGCAGATGCAACTTCAAAGGTAGTGCTT
CCATAGATGTATGTATCAAGTACGGAGTACATTAATGCATTTTTTGTTGC
ATTAAAAGAATGCAATAGTATCTGATAGAAGCTTGGATCTTTATCCCAAA
TATCATTGATATGGAATAGAGTATCTGAGAAGCAAAATATGAATAGCAAG
ACTAGTGGATTAAGCATTAAAGTGAAAAATTTCTGA
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