EMLSAG00000007954, EMLSAG00000007954-690720 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007954
Unique NameEMLSAG00000007954-690720
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000007954 vs. C. finmarchicus
Match: gi|592868161|gb|GAXK01089401.1| (TSA: Calanus finmarchicus comp7559700_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.870e+0
Identity = 14/35 (40.00%), Postives = 22/35 (62.86%), Query Frame = 0 
Query:   19 GVDWIKTTMPRDRSVNLVRQLKERGIYYTGTIQKK 53
            GV  +K+   R++++NL +Q KER      TI+KK
Sbjct:   40 GVVRVKSNQKREQTINLFKQEKERLAEIEQTIRKK 144
[Close]
BLAST of EMLSAG00000007954 vs. C. finmarchicus
Match: gi|592752586|gb|GAXK01201827.1| (TSA: Calanus finmarchicus comp87440_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 9.315e+0
Identity = 16/48 (33.33%), Postives = 26/48 (54.17%), Query Frame = 0 
Query:   76 YVNVNAGVGXLKWFDNRATHIISSMNACHDTVMLYNTHMGGVDKADQL 123
            ++ + +G G +  FD    H +S  +     +M+Y+TH GGV KA  L
Sbjct: 1867 FILIFSGSGLMYVFDG---HPVSGRSDFIQPIMVYDTHHGGVAKAASL 2001
[Close]
BLAST of EMLSAG00000007954 vs. C. finmarchicus
Match: gi|592752587|gb|GAXK01201826.1| (TSA: Calanus finmarchicus comp87440_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 9.406e+0
Identity = 16/48 (33.33%), Postives = 26/48 (54.17%), Query Frame = 0 
Query:   76 YVNVNAGVGXLKWFDNRATHIISSMNACHDTVMLYNTHMGGVDKADQL 123
            ++ + +G G +  FD    H +S  +     +M+Y+TH GGV KA  L
Sbjct: 1867 FILIFSGSGLMYVFDG---HPVSGRSDFIQPIMVYDTHHGGVAKAASL 2001
[Close]
BLAST of EMLSAG00000007954 vs. L. salmonis peptides
Match: EMLSAP00000007954 (pep:novel supercontig:LSalAtl2s:LSalAtl2s46:58220:59118:-1 gene:EMLSAG00000007954 transcript:EMLSAT00000007954 description:"maker-LSalAtl2s46-snap-gene-0.4")

HSP 1 Score: 307.375 bits (786), Expect = 4.408e-108
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0 
Query:    1 MNLMVLPSIKDYWRTDQFGVDWIKTTMPRDRSVNLVRQLKERGIYYTGTIQKKRKGLPEFIQDKELGKTTGSMDAYVNVNAGVGXLKWFDNRATHIISSMNACHDTVMLYNTHMGGVDKADQLVSTRIWDRKSPTKFYLLLHFDYFE 147
            MNLMVLPSIKDYWRTDQFGVDWIKTTMPRDRSVNLVRQLKERGIYYTGTIQKKRKGLPEFIQDKELGKTTGSMDAYVNVNAGVGXLKWFDNRATHIISSMNACHDTVMLYNTHMGGVDKADQLVSTRIWDRKSPTKFYLLLHFDYFE
Sbjct:    1 MNLMVLPSIKDYWRTDQFGVDWIKTTMPRDRSVNLVRQLKERGIYYTGTIQKKRKGLPEFIQDKELGKTTGSMDAYVNVNAGVGXLKWFDNRATHIISSMNACHDTVMLYNTHMGGVDKADQLVSTRIWDRKSPTKFYLLLHFDYFE 147
[Close]
BLAST of EMLSAG00000007954 vs. L. salmonis peptides
Match: EMLSAP00000011854 (pep:novel supercontig:LSalAtl2s:LSalAtl2s832:180091:180582:1 gene:EMLSAG00000011854 transcript:EMLSAT00000011854 description:"augustus_masked-LSalAtl2s832-processed-gene-1.1")

HSP 1 Score: 72.4034 bits (176), Expect = 1.056e-16
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 0 
Query:    1 MNLMVLPSIKDYWRTDQFGVDWIKTTMPRDRSVNLVRQL 39
            MNLMVLPSIKDYW TDQFGVDWIKTTMPRDR + ++R L
Sbjct:   52 MNLMVLPSIKDYWCTDQFGVDWIKTTMPRDRFLEILRML 90
[Close]
BLAST of EMLSAG00000007954 vs. nr
Match: gi|645040806|ref|XP_008212369.1| (PREDICTED: piggyBac transposable element-derived protein 4-like [Nasonia vitripennis])

HSP 1 Score: 66.6254 bits (161), Expect = 3.113e-10
Identity = 41/132 (31.06%), Postives = 66/132 (50.00%), Query Frame = 0 
Query:   32 SVNLVRQLKERGIYYTGTIQKKRKGLPEFIQDKELGKTTGSMDAYVNVNAGVGXLKWFDNRATHII-SSMNA-------------------CHDTVMLYNTHMGGVDKADQLVSTRIWDRKSPTKFYLLLHF 143
            SVNLV +L ++GIY  GT++  RKGLPE ++ KE  K     D    +  G+  +KW D +   ++ S+ N                    C  T+  YN  MGGVD+ DQL    + +R+S   ++ ++++
Sbjct:  173 SVNLVEELLDKGIYSVGTVRNNRKGLPEMMKAKEKMKRG---DFNYRIKKGISAIKWMDRKPVTVLTSAFNPTETVEITRKLKDESRLPIFCPITIQAYNKIMGGVDRFDQLREVYMIERRSKKWWHSIMYY 301
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BLAST of EMLSAG00000007954 vs. nr
Match: gi|1000206716|gb|KXJ77569.1| (hypothetical protein RP20_CCG007267 [Aedes albopictus])

HSP 1 Score: 63.929 bits (154), Expect = 3.343e-9
Identity = 52/166 (31.33%), Postives = 79/166 (47.59%), Query Frame = 0 
Query:    3 LMVLPSIKDYWRTDQFGVDWIKTTMPRDRSVNLVRQLKERGIYYTGTIQKKRKGLPEFIQDKEL-GKTTGSMDAYVNVNAGVGXLKWFDNRATHIISSMNACH------------------DTVML---YNTHMGGVDKADQLVSTRIWDRKSPTKFYLLLHFDYF 146
            L ++ ++ ++ +   FG +W         S +L  +LK RG  YTGTI+  R     FI DKEL  K  GS DAY++ +  +  + W DN+A H+IS+ N                     D  M+   YN +MGG+D  D LV+  ++     TK Y +  F +F
Sbjct:  240 LKLVATLPEHKQVRIFGDNWFS-------SYSLAMELKNRGFQYTGTIRPGRISNANFIADKELMAKGRGSYDAYISSD-NIIIVTWIDNKAIHLISTYNGVMPLDIVNRWSTAQKKFISVDRPMIVRDYNQNMGGIDLNDFLVA--LYRTSIGTKKYYMRIFMHF 395
[Close]
BLAST of EMLSAG00000007954 vs. nr
Match: gi|1121160828|ref|XP_019526061.1| (PREDICTED: piggyBac transposable element-derived protein 3-like [Aedes albopictus])

HSP 1 Score: 62.7734 bits (151), Expect = 3.575e-9
Identity = 47/145 (32.41%), Postives = 70/145 (48.28%), Query Frame = 0 
Query:    3 LMVLPSIKDYWRTDQFGVDWIKTTMPRDRSVNLVRQLKERGIYYTGTIQKKRKGLPEFIQDKEL-GKTTGSMDAYVNVNAGVGXLKWFDNRATHIISSMNACH------------------DTVML---YNTHMGGVDKADQLVS 125
            L ++ ++ ++ +   FG +W         S +L  +LK RG  YTGTI+  R     FI DKEL  K  GS DAY++ +  +  + W DN+A H+IS+ N                     D  M+   YN +MGG+D  D LV+
Sbjct:   61 LKLVATLPEHKQVRIFGDNWFS-------SYSLAMELKNRGFQYTGTIRPGRISNANFIADKELMAKGRGSYDAYISSD-NIIIVTWIDNKAIHLISTYNGVMPVDIVNRWSTAQKKFISVDRPMIVRDYNQNMGGIDLNDFLVA 197
[Close]
BLAST of EMLSAG00000007954 vs. nr
Match: gi|1121117459|ref|XP_019547962.1| (PREDICTED: piggyBac transposable element-derived protein 3-like [Aedes albopictus])

HSP 1 Score: 63.929 bits (154), Expect = 3.610e-9
Identity = 52/166 (31.33%), Postives = 79/166 (47.59%), Query Frame = 0 
Query:    3 LMVLPSIKDYWRTDQFGVDWIKTTMPRDRSVNLVRQLKERGIYYTGTIQKKRKGLPEFIQDKEL-GKTTGSMDAYVNVNAGVGXLKWFDNRATHIISSMNACH------------------DTVML---YNTHMGGVDKADQLVSTRIWDRKSPTKFYLLLHFDYF 146
            L ++ ++ ++ +   FG +W         S +L  +LK RG  YTGTI+  R     FI DKEL  K  GS DAY++ +  +  + W DN+A H+IS+ N                     D  M+   YN +MGG+D  D LV+  ++     TK Y +  F +F
Sbjct:  371 LKLVATLPEHKQVRIFGDNWFS-------SYSLAMELKNRGFQYTGTIRPGRISNANFIADKELMAKGRGSYDAYISSD-NIIIVTWIDNKAIHLISTYNGVMPLDIVNRWSTAQKKFISVDRPMIVRDYNQNMGGIDLNDFLVA--LYRTSIGTKKYYMRIFMHF 526
[Close]
BLAST of EMLSAG00000007954 vs. nr
Match: gi|1028689964|ref|XP_016657948.1| (PREDICTED: piggyBac transposable element-derived protein 4-like [Acyrthosiphon pisum])

HSP 1 Score: 62.003 bits (149), Expect = 7.520e-9
Identity = 46/119 (38.66%), Postives = 60/119 (50.42%), Query Frame = 0 
Query:   36 VRQLKERGIYYTGTIQKKRKGLPEF-IQDKELGKTTGSMDAYVNVNAGVGXLKWFDNRATHIISSMN--------------------ACHDTVMLYNTHMGGVDKADQLVSTRIWDRKS 133
            + +L + GIY  GT++  RKGLP+  IQDK+L K  G  +  V+   GV  LKW DNR   ++S+ +                    +C   V  YNTHMG VD AD L S    DRKS
Sbjct:    1 MEELLQDGIYACGTVRANRKGLPKIQIQDKKLKK--GDSEGRVST-TGVSWLKWRDNRFIQLLSNFHNPDDISSCTRKNKDGSTISISCPLAVTNYNTHMGYVDYADMLKSYYEIDRKS 116
[Close]
BLAST of EMLSAG00000007954 vs. nr
Match: gi|357619891|gb|EHJ72291.1| (putative piggyBac transposase Uribo1 [Danaus plexippus])

HSP 1 Score: 62.3882 bits (150), Expect = 8.722e-9
Identity = 43/123 (34.96%), Postives = 61/123 (49.59%), Query Frame = 0 
Query:   32 SVNLVRQLKERGIYYTGTIQKKRKGLP-EFIQDKELGKTTGSMDAYVNVNAGVGXLKWFDNRATHIIS-------------------SMNACHDTVMLYNTHMGGVDKADQLVSTRIWDRKSP 134
            SV L+ +LK    Y +GTI+  RKGL    + D ++ K   S D + N++  +G  KW DN+  H++S                   S   C   V  YN++MGGVD AD+L +    DRKSP
Sbjct:  137 SVALLEKLKTENTYASGTIRSNRKGLAGNMLADSKI-KRGDSDDRFSNLD--IGYWKWKDNKVVHLVSNFHENETAIVSRKVKNGSKSATTCPIVVKDYNSYMGGVDTADRLRAIYCIDRKSP 256
[Close]
BLAST of EMLSAG00000007954 vs. nr
Match: gi|560117123|emb|CDJ98242.1| (Transposase domain containing protein [Haemonchus contortus])

HSP 1 Score: 62.7734 bits (151), Expect = 9.098e-9
Identity = 45/119 (37.82%), Postives = 66/119 (55.46%), Query Frame = 0 
Query:   32 SVNLVRQLKERGIYYTGTIQKKRKGLPEFIQDKEL--GKTTGSMDAYVNVNAGVGXLKWFDNRATHIISS-----MNACHDTVML--YNTHMGGVDKADQLVSTRIWDRKSPTKFYLLL 141
            S+ L R+L E  +YY GTI+K R G+P  ++ K+L  G+     D Y     GV  LKW D R  ++ISS     +N  +  VM+  YN   G VD +DQ+ +   + RK+ +K+YL L
Sbjct:  291 SIPLARKLLEHDVYYLGTIRKNRIGIPAEVKTKKLKKGEVIARQDEY-----GVTVLKWKDKRELYMISSFLDDTVNDANKPVMVERYNKSKGFVDLSDQMTAYTPFIRKT-SKWYLRL 403
[Close]
BLAST of EMLSAG00000007954 vs. nr
Match: gi|1080057584|ref|XP_018570593.1| (PREDICTED: piggyBac transposable element-derived protein 3-like [Anoplophora glabripennis])

HSP 1 Score: 62.3882 bits (150), Expect = 1.127e-8
Identity = 46/123 (37.40%), Postives = 62/123 (50.41%), Query Frame = 0 
Query:   32 SVNLVRQLKERGIYYTGTIQKKRKGLP-EFIQDKELGKTTGSMDAYVNVNAGVGXLKWFDNRAT-------------HIISSMN-------ACHDTVMLYNTHMGGVDKADQLVSTRIWDRKS 133
            S+ L+RQL++  I+ TGTI+KKRKG+P +F  DKEL +  G  D  V  + G+  +KW D R               H++            C   +  YN +MG VDKAD L  T   DRKS
Sbjct:  273 SLVLLRQLQKENIHATGTIRKKRKGIPDDFKTDKELKR--GDFDWRV-TDDGISCVKWMDKRIVLLGSNYENPSDTDHVVRRKKNGEMENVPCPKVLKNYNQNMGFVDKADMLKKTYQMDRKS 392
[Close]
BLAST of EMLSAG00000007954 vs. nr
Match: gi|1121090645|ref|XP_019535901.1| (PREDICTED: piggyBac transposable element-derived protein 3-like [Aedes albopictus])

HSP 1 Score: 61.2326 bits (147), Expect = 2.425e-8
Identity = 51/166 (30.72%), Postives = 78/166 (46.99%), Query Frame = 0 
Query:    3 LMVLPSIKDYWRTDQFGVDWIKTTMPRDRSVNLVRQLKERGIYYTGTIQKKRKGLPEFIQDKEL-GKTTGSMDAYVNVNAGVGXLKWFDNRATHIISSMNACH------------------DTVML---YNTHMGGVDKADQLVSTRIWDRKSPTKFYLLLHFDYF 146
            L ++ ++ ++ +   FG +W         S +L  +LK RG  YTGTI+  R     FI DKEL  K  GS DAY++ +  +  + W DN+A H+I + N                     D  M+   YN +MGG+D  D LV+  ++     TK Y +  F +F
Sbjct:   61 LKLVATLPEHKQVRIFGDNWFS-------SYSLAMELKNRGFQYTGTIRPGRISNANFIADKELMAKGRGSYDAYISSD-NIIIVTWIDNKAIHLILTYNGVMPLDIVNRWSTAQKKFISVDRPMIVRDYNQNMGGIDLNDFLVA--LYRTSIGTKKYYMRIFMHF 216
[Close]
BLAST of EMLSAG00000007954 vs. nr
Match: gi|748325898|gb|KIH44577.1| (hypothetical protein ANCDUO_25397 [Ancylostoma duodenale])

HSP 1 Score: 60.077 bits (144), Expect = 4.151e-8
Identity = 42/119 (35.29%), Postives = 67/119 (56.30%), Query Frame = 0 
Query:   32 SVNLVRQLKERGIYYTGTIQKKRKGLPEFIQDKELGKTTGSMDAYVNVNAGVGXLKWFDNRATHIIS-------SMNACHDTVMLYNTHMGGVDKADQLVSTRIWDRKSPTKFYLLLHF 143
            SV LVR+L +R  +  GT+++ RKG+P  ++D++L +  G M  Y    +G+  LKW D R   +IS       + N     V  YN  MG VD++DQ+ +   + RK+ T++YL + F
Sbjct:   19 SVPLVRKLLKRKTHLIGTLRRNRKGIPTQLKDRKLKR--GQM-YYQQSRSGILVLKWKDKRDLLMISTKHDASLTQNNKPKVVEDYNNMMGYVDQSDQMAAYTPFVRKT-TRWYLRIFF 133
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007954 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007954 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592868161|gb|GAXK01089401.1|2.870e+040.00TSA: Calanus finmarchicus comp7559700_c0_seq1 tran... [more]
gi|592752586|gb|GAXK01201827.1|9.315e+033.33TSA: Calanus finmarchicus comp87440_c0_seq2 transc... [more]
gi|592752587|gb|GAXK01201826.1|9.406e+033.33TSA: Calanus finmarchicus comp87440_c0_seq1 transc... [more]
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BLAST of EMLSAG00000007954 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000079544.408e-108100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s46:58220:... [more]
EMLSAP000000118541.056e-1682.05pep:novel supercontig:LSalAtl2s:LSalAtl2s832:18009... [more]
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BLAST of EMLSAG00000007954 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007954 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007954 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 20
Match NameE-valueIdentityDescription
gi|645040806|ref|XP_008212369.1|3.113e-1031.06PREDICTED: piggyBac transposable element-derived p... [more]
gi|1000206716|gb|KXJ77569.1|3.343e-931.33hypothetical protein RP20_CCG007267 [Aedes albopic... [more]
gi|1121160828|ref|XP_019526061.1|3.575e-932.41PREDICTED: piggyBac transposable element-derived p... [more]
gi|1121117459|ref|XP_019547962.1|3.610e-931.33PREDICTED: piggyBac transposable element-derived p... [more]
gi|1028689964|ref|XP_016657948.1|7.520e-938.66PREDICTED: piggyBac transposable element-derived p... [more]
gi|357619891|gb|EHJ72291.1|8.722e-934.96putative piggyBac transposase Uribo1 [Danaus plexi... [more]
gi|560117123|emb|CDJ98242.1|9.098e-937.82Transposase domain containing protein [Haemonchus ... [more]
gi|1080057584|ref|XP_018570593.1|1.127e-837.40PREDICTED: piggyBac transposable element-derived p... [more]
gi|1121090645|ref|XP_019535901.1|2.425e-830.72PREDICTED: piggyBac transposable element-derived p... [more]
gi|748325898|gb|KIH44577.1|4.151e-835.29hypothetical protein ANCDUO_25397 [Ancylostoma duo... [more]

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BLAST of EMLSAG00000007954 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s46supercontigLSalAtl2s46:58220..59118 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s46-snap-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007954 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007954EMLSAT00000007954-703801Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s46:58220..59118-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007954-690720 ID=EMLSAG00000007954-690720|Name=EMLSAG00000007954|organism=Lepeophtheirus salmonis|type=gene|length=899bp|location=Sequence derived from alignment at LSalAtl2s46:58220..59118- (Lepeophtheirus salmonis)
ATGAATCTAATGGTTTTGCCTTCCATCAAGGACTACTGGCGTACGGACCA
GTTTGGAGTGGATTGGATCAAGACCACGATGCCAAGGGATAGGTTCTTAG
AAATTTTGAGAATGCTTCATTTTTCAAACAATCATGTGAAGATCGATGAC
AAGGCATGGAATGTACGACTACTTTTGGATCATTGGAACAAAATATACAA
ACGTTATGCCCAGAATTCTAAATTTCAATCAATAGACGAACACATGACAA
AGTACAAGGGCCACCATGGAATGCAGCAGTATCTKAAAGAKAAGCCAATT
AAGTGGGGATTCAACAACTGGCTTCGATGCGATGCAAAGACAGGATACTG
TTATGAATTTGATTTATACCAGGGCAAAGCTGGAGGACCATCATCCGAGT
TCGGGCTAGGGGGTGACATTGTGTTGAGCCTCACTTCATCACTGAAGTTT
ACCTACGGCAGAGTCTTCGCAGACAATTATTTTAGATCGGTAAATTTGGT
ACGACAGCTAAAGGAGAGAGGAATTTATTATACTGGAACAATTCAGAAGA
AAAGAAAGGGACTACCAGAATTTATTCAAGACAAAGAGTTGGGGAAGACA
ACGGGAAGTATGGATGCATATGTCAACGTGAATGCAGGTGTTGGCMTGCT
TAAATGGTTCGACAACCGGGCAACGCATATCATTTCTTCTATGAATGCCT
GCCATGACACTGTTATGGTCAACTGCAGGAAAAAGGGGAACTCAAAAAAC
TTCAAATTCCATGACCTACTGTTGTGAAGCTTTATAACACGCACATGGGG
GGAGTAGATAAAGCAGATCAACTTGTGTCTACAAGAATCTGGGACAGAAA
ATCTCCCACTAAGTTCTACTTGCTCCTACACTTCGATTATTTCGAATAG
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