EMLSAG00000008626, EMLSAG00000008626-691392 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008626
Unique NameEMLSAG00000008626-691392
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000008626 vs. C. finmarchicus
Match: gi|592883323|gb|GAXK01075052.1| (TSA: Calanus finmarchicus comp3587366_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.796e+0
Identity = 26/80 (32.50%), Postives = 44/80 (55.00%), Query Frame = 0 
Query:    8 LENKLKIEKNNTFEHNKEVESLKN---KVSGELGGI-----VMNWNSILFAKSKEL--LKKFGISKREIDVMVVRAMSDS 77
            +E KLKI ++    +N  +ESL+N   K   E+  +      ++ N ++   SKE+  LKK  I+  EIDV + + +S+S
Sbjct:  306 IEEKLKIVQHEIITNNTRIESLENWVLKQDNEINQLNDKLSCLDRNGVVLKDSKEIEDLKK-KITSLEIDVNLAKKVSNS 542
[Close]
BLAST of EMLSAG00000008626 vs. L. salmonis peptides
Match: EMLSAP00000008626 (pep:novel supercontig:LSalAtl2s:LSalAtl2s530:811128:816266:1 gene:EMLSAG00000008626 transcript:EMLSAT00000008626 description:"maker-LSalAtl2s530-snap-gene-8.10")

HSP 1 Score: 228.024 bits (580), Expect = 7.264e-78
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 
Query:    1 MAKRVEHLENKLKIEKNNTFEHNKEVESLKNKVSGELGGIVMNWNSILFAKSKELLKKFGISKREIDVMVVRAMSDSFKVWAADRERLDHLYSIFIVTRSISSLSSTEFMELIC 114
            MAKRVEHLENKLKIEKNNTFEHNKEVESLKNKVSGELGGIVMNWNSILFAKSKELLKKFGISKREIDVMVVRAMSDSFKVWAADRERLDHLYSIFIVTRSISSLSSTEFMELIC
Sbjct:    1 MAKRVEHLENKLKIEKNNTFEHNKEVESLKNKVSGELGGIVMNWNSILFAKSKELLKKFGISKREIDVMVVRAMSDSFKVWAADRERLDHLYSIFIVTRSISSLSSTEFMELIC 114
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008626 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000008626 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592883323|gb|GAXK01075052.1|5.796e+032.50TSA: Calanus finmarchicus comp3587366_c0_seq1 tran... [more]
back to top
BLAST of EMLSAG00000008626 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000086267.264e-78100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s530:81112... [more]
back to top
BLAST of EMLSAG00000008626 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000008626 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000008626 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000008626 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s530supercontigLSalAtl2s530:811128..816266 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s530-snap-gene-8.10
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008626 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008626EMLSAT00000008626-704473Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s530:811128..816266+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008626-691392 ID=EMLSAG00000008626-691392|Name=EMLSAG00000008626|organism=Lepeophtheirus salmonis|type=gene|length=5139bp|location=Sequence derived from alignment at LSalAtl2s530:811128..816266+ (Lepeophtheirus salmonis)
TGCACTTCCAGATAGTATTAGAACTCATTTATCAGTTGTTAGGGTATAAG
TAGCAGGCGAAATGGTATTTTAAGTAACTCTTTCATTTTTGGGTTTGTAC
AAGATTATGTTGTAAGCTTTATTCAAATAATCTGAATTATTATGATTATA
TTCTTCATTGAATAATAATGTAATTAGTTAATAACGATGACTAAGTACTG
TATCGCGTTGAATCAAATTAAGGAAAATGCCGGGTTGCTCAGCGTACAAA
TGCAAATCTAGAATAGGGGATAAAAAGGTCCGAAAAATTAAGCTTACATA
AGTTCCCAAGAGGATGAGCTCCTTAAAGGGTAAATCCAATATTTATTACC
TGGTTAAATATACATCTTGTCATTTGATTAAGTGAGTGGATTCAAAATAC
AGGGAATTATATCCTTGGCAAATACACTGGAATGCTGACGTCACTATGAA
AAGAGTTATCTAGAACTCCCTGTTCAAAAATACCTCGTCTGAAAAGCAAC
CCCATTCCTACAATTTTCCTAGAGATACCAAATTTTTTAAGAAATTCTCT
AAAAGGGGTTGCGGCCTTTTTCAACAATACAAAGGTAATTCTTTTAATAT
GCTAATTTGAATTTAAACATAAAATTTAATATCAATTTACAATAATGCTC
TTAATAACATTGAAATATTGAGATTATAATTTATAATCTACAATAGATAA
TAACTTTTATTTGTATAATCAATTGCTAGGTCTGACGAATGGGAGAAAAA
ATGGCCGAAATAAAATGTAAGAGGCAAGATGAAAAAATAAGGCAACAAGA
ATTACTTAAAAAACCCTCAACGAAACGTCCTCCTTGATCATTGTTATTTT
TTAGTGGATAACCGGGCACTCAAAATAAAATTCCTGCTAATGGCAAAAAG
AGTGGAGCACTTAGAGAACAAATTAAAAATCGAAAAAAACAATACTTTTG
AACATAACAAAGAGGTTGAATCCCTGAAGGTAAATATATATATTATCATA
CTTAACATATATTAGTTTTAAATAAGTTATTAAATATTCTGAGCAAGGAG
ACTTCTTACCAAACGATTCCATAAACAGAGGTATGAATACAGAACCTCTT
GCTCTTTTGATATCAAGGCATGATTATAAAATTAAAGAATTGCTATACTG
CTTAGCTCTGAAAATATTAGTTATTGAAGCTTAAACAAACCCTGTTTTTA
TATCTTAGGAAGTGAATGATGACTTAAAAAAATAGCAAGGAACTGAAGAA
ATTCTGCAATAATTTAATGAAACAGTGATTTCAAATCTACTTTTCCGTTG
CAGTGAAATTAATCAAATGTACAACCATCGTAGTAGAGAAGCTTACTCAC
TTGAATTACGTAAATTTGCAACAACTCTTCCATTTTATAGTGCGAAAAAC
ATGGAAGTTTAAGAAAAACATTTCATTTTGCTTACTATCACAATCGACCT
TACGCAGCTGGTATTCAACTATTGATTGCACTCCTGGTTTCACTGATGAA
TTTCTTAAAGCTAAATCTCAAAAAGAAAAAAATAATCTGCACACTTATGT
AAGATGAAATGGCTTTAAAAAGGTCTTGAGTTTGACAGTACACGGTATCA
TGGTTATGTGGACTTTGGCAGAGATCAATCTACAGACTCTATTGCTCAAA
ATGCCCTAGTTTTCATGGTATCTAGTATCAATGATAGGTTCAAATTATCA
GCCCATCACCTAATTTAACCATGATTAAAAATTCGGAGCAAATTTAGAAT
TGTATTATTTACGACCATGGTTTTTAATTCAGCAGCTCCGGATAGCATAA
TATATGTAATTCTTGATTGTTCTCACATGGTAAAATTATTCAGGAATAGT
TTGGCTTCATGTAAAATTATTTATGATAATAACGGTGATAAAATTGAATG
GAGATTCATTGCCGAATTACAAAAATTACAAGGTGAAGAAGGCCTTAAAT
ATGGAAACAAATTAACCAAGAGGCATGTTAACTTTTGCAGGATGAAGATG
AAAGCTTCTTATGCTACACAAACTCTTAGCTAGTCAGTAGCGAATGCAAT
CGAGTTTCTCATCAAAGATTTAAATTGCCTTCAATTTAAAGGATTAGAAA
ACACGGTTAATTTTATAAGAATTATGAATCGTTTTTTCGATAGTTGCAAT
AGTAGAATTTGTTTTGGAAGAGGCTTTAAGGCTCCAATGAAATGTTTTGG
AAACCATTTGTTGAAGATAGCTTCAATCATATCAAAGATTTAAAAATTGA
TCCTTCGACTTTACTATACAAATTAAGGGAAAAGACAGGCTTCATTTGTT
TTTGTGTGGCTATAAAGTCAATTTATAATATATTTGATACATCAGCATGT
CAAGTCCAATGACCAAAAGTATCTTCTAATGTATCCTCTGATGTCACTAG
ATTACCTAGAACTCTTTTTTGTTTGTTCTTTACGTTTTAGATTGGGACTA
AACAATAACACAACAGCACGTCAATTTGTGTTAGTTAATAATAGTTTAAT
GAATTGTTATAAATTTTTCTTTAAAATCATATTCTTTTTAATTACAGGCA
AGTTATAAAAGGCTCCTTGTTCACCAAGAAGTAAAAGAAAGCTTCTTCCA
TCATTAAGTTTTTCAAAATTAAAGATTGTGAACCTTTTTGATTTCTGGTG
TGTGAATTTTCTGGCGAAGATCGAGATCTCATCGAAACTTATCAAGATAG
TGTTAATAGGGCTTCAGATTTATTATTATATTTAAATACATTACATGCTA
GTCAGCTTTACAATATGATATTCTCAGCGAACAAACTCGATAAATTTTAT
TGACGTCGACAAATCCAAGACGATGCTTTACAATGCTATTTGCCAATTTA
TTTGAAACAGGAGATTCCTATCGTCCTATTGGGGTGAAGTGTTAAAAAAC
AACGTCATTTTCATAATTATATTGCTTATGTTGGATTTAAATATTTTAAT
ATATCTAGCAAAAATCTCATAAATYAYGCTAATAGTAGCATACACTCTGG
TAAAAAAAGGTCGAATTCTCATGGTGCAAGNTTTCAGAAAAATTACTAAA
TTATCTTCTAAATTTTGAACTTCCATTTTATTTCGTTAAATATAGGATTT
AATCTAAAAAAATAGTTTTATTCAGATCTTAAAATAATAATACATTTTCA
TAATAATATAGCTATAAATCAAAGAAAAGCAGGATAAAGTATAAATAGTT
AGCTTGAATTTTGAACGTCTGTATTAATGATGATTATATTATATTATCTG
TATTAATGCCATGAATGATTATTTTTAAAATCAATAATAATTCAATATAA
GAACTGTTATGTGAAACACTTATTAATAATCTTCATTAGTTTGGAGATTC
TAAATTTTTTATGGAGGTAATATTCCAATATAGTGATAAGCAATTAAGTT
TTTTTTTCAAGATGATTAAGACTATCTAAGTTTCAAAATTACAAGTCTAC
AGAAGTTAAGAGGTCACTTATAATTGTTTATTACATTATCACTTAGGACT
CAATAATTCACAAAATCTATTTATACAGATAGTAGCAAAATATAATATAT
ATTGCAGACAAAAGTATCGATAAAAAAGGGTGCATATTCATTGAGAGTCT
AAGATTGATATCTACTTTTTCCAATGAATTTGTGCATTATATACATCACG
GAAACTGAAGGATTCTTAACAATGAAATATTTTTCTCAGAATAAGAGACG
AAAGAAAAAAAAAGTCGACTTTGGAAGGAAAAGGATTCAAGAGTTTCAAC
GAAGGAACTGTGGATGAGAAATGAAACTCTTAGTTCCTCACTGGGTAATT
CATTCGGAAATATGCATTGTAGACCAAAATATCGAGGAAAATGAAGTACA
TTATCTTTACGAGTCTAGAATTATCTTGCACTTGTTTTCCAATGACAAAA
GAGACACAGTAGTAATAAAGAAATCAAGGGTGAGATTGAAGTGTCCAGGT
TTTATAATTATCCGTATAGACTGTATATAAAAAACTTATATTAGAATTGA
TATAAATGTGATAGATGAGTAATTTCTGCATTATATACATCAGGGACACT
GAAGGACTCTCAGTGGAAATTGTAATCAGAAAGTATGTCCGTAAAATAAC
GGGCCTGTTCCAAGGGGAATCACAACAATCTCCAAGACAATACATTGATT
ACAGAAATATACAGGGCTTTGTAAATCATGGCAAACAACGGGGGCATACA
AGTCTAAATTTAATCTATATAAGGTAATTCCTAAGAATAATAAATATGAA
AGCTGTGGTAACAGGGTTAAAAATCTTGACTATATCCTGCAAACATGCCT
ACGTGTACAAGGCTTCCGCATAGAGAGACATGATAAATTAGTTGACTACT
TGGACTTGAAGTTKCGCCAGCCAGGAGTGCAGGTTTTTAAGAACCAAGTG
TACAAAATAGGGGAGACGGCATTAAAACTAGATCTTGTATTAGTACAAGA
AGGGAATGTCCACATCTTGGACCCAACAATTGTTGGGAAAACAACTGGTT
TAGTCTCGGCCAATAGTTTAAAAAGGAAAAAGTATTTGTGAAATGATTTA
CTGGAATCTATTAAGTTAAAATACTCTTTGGAGAATAAAGTGAGTGGCGA
ATTAGGAGGGATTGTTATGAATTGGAATTCAATCCTATTTGCCAAATCGA
AAGAGCTACTTAAGAAATTTGGCATATCTAAAAGGGAAATTGATGTCATG
GTAGTCAGGGCCATGAGTGACTCATTTAAGGTTTGGGCAGCGGATCGTGA
AAGACTGGACCATCTATACAGGTTTTAACCCCTCCTAAATAAGTTTTGGT
TTTTGTAGGTTGTAAATGATATTTTGCTTTTACATAGTTGTATTATATAT
TATATTATAAACATTATAAGTTTATAGTTCAACATTGGAATAACTAGATT
TTTCCCTTGTTGGTCCTTATGGGCATTGGGATTAACTATGTTGTTTTCTC
TGGTGTGGCATCGGGCTAGAATTAGATAGATTTGTGGATATTAGTTGAGA
TGCAAAATTATCGTTCTTTTGATTGTTTTTCGTTTGGTTTACCCTCTAAT
TTGATTAATTTTATATTTAATTAAGTATTTTCATTGTGACTAGATCCATT
TCTAGCCTTTCTTCTACTGAATTTATGGAATTGATTTGC
back to top
Add to Basket