EMLSAG00000008675, EMLSAG00000008675-691441 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008675
Unique NameEMLSAG00000008675-691441
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000008675 vs. C. finmarchicus
Match: gi|592954352|gb|GAXK01004201.1| (TSA: Calanus finmarchicus comp255912_c2_seq4 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 1.282e-1
Identity = 22/94 (23.40%), Postives = 37/94 (39.36%), Query Frame = 0 
Query:  138 FGSIFKSEYVSIFLAQQWFHLITGTGCWILAAGLYHTLG-------------NDNMXRSAPQEPWETLIP---NSNTLTFIFRELADATEKYSL 215
            +  + K + ++I +AQ   + I  T  W + A  Y   G             ND       + P     P   +S  L ++FR LAD  +K+ +
Sbjct:  202 YEGVLKPDNIAIHVAQNMVNFIASTLAWAVIAPFYQGFGKEASRVKREDVNINDEDVSYDNENPHPQFFPTSISSQKLAWLFRSLADIADKFDI 483
[Close]
BLAST of EMLSAG00000008675 vs. C. finmarchicus
Match: gi|592954353|gb|GAXK01004200.1| (TSA: Calanus finmarchicus comp255912_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 1.381e-1
Identity = 22/94 (23.40%), Postives = 37/94 (39.36%), Query Frame = 0 
Query:  138 FGSIFKSEYVSIFLAQQWFHLITGTGCWILAAGLYHTLG-------------NDNMXRSAPQEPWETLIP---NSNTLTFIFRELADATEKYSL 215
            +  + K + ++I +AQ   + I  T  W + A  Y   G             ND       + P     P   +S  L ++FR LAD  +K+ +
Sbjct:  217 YEGVLKPDNIAIHVAQNMVNFIASTLAWAVIAPFYQGFGKEASRVKREDVNINDEDVSYDNENPHPQFFPTSISSQKLAWLFRSLADIADKFDI 498
[Close]
BLAST of EMLSAG00000008675 vs. C. finmarchicus
Match: gi|592906321|gb|GAXK01052054.1| (TSA: Calanus finmarchicus comp28951_c6_seq8 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 2.797e-1
Identity = 21/89 (23.60%), Postives = 42/89 (47.19%), Query Frame = 0 
Query:  138 FGSIFKSEYVSIFLAQQWFHLITGTGCWILAAGLY-HTLGNDNMXRSAPQEPWETLIP-----NSNTLTFIFRELADATEKYSLHHDEL 220
            +  + +SE +++ + Q   + +  T  W    GL+    G  N+ +S  +   E + P     +++ L ++ R LAD  E++    DEL
Sbjct:   37 YSGVMQSENIAVHVIQNLVNFLASTLVW----GLFIPGFGGSNVRKSRERRDVENVDPYGGLISADKLAWVLRRLADTAEQFHRWGDEL 291
[Close]
BLAST of EMLSAG00000008675 vs. C. finmarchicus
Match: gi|592906323|gb|GAXK01052052.1| (TSA: Calanus finmarchicus comp28951_c6_seq6 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 4.712e-1
Identity = 21/89 (23.60%), Postives = 42/89 (47.19%), Query Frame = 0 
Query:  138 FGSIFKSEYVSIFLAQQWFHLITGTGCWILAAGLY-HTLGNDNMXRSAPQEPWETLIP-----NSNTLTFIFRELADATEKYSLHHDEL 220
            +  + +SE +++ + Q   + +  T  W    GL+    G  N+ +S  +   E + P     +++ L ++ R LAD  E++    DEL
Sbjct:  134 YSGVMQSENIAVHVIQNLVNFLASTLVW----GLFIPGFGGSNVRKSRERRDVENVDPYGGLISADKLAWVLRRLADTAEQFHRWGDEL 388
[Close]
BLAST of EMLSAG00000008675 vs. C. finmarchicus
Match: gi|592906326|gb|GAXK01052049.1| (TSA: Calanus finmarchicus comp28951_c6_seq3 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 6.725e-1
Identity = 21/89 (23.60%), Postives = 42/89 (47.19%), Query Frame = 0 
Query:  138 FGSIFKSEYVSIFLAQQWFHLITGTGCWILAAGLY-HTLGNDNMXRSAPQEPWETLIP-----NSNTLTFIFRELADATEKYSLHHDEL 220
            +  + +SE +++ + Q   + +  T  W    GL+    G  N+ +S  +   E + P     +++ L ++ R LAD  E++    DEL
Sbjct:  311 YSGVMQSENIAVHVIQNLVNFLASTLVW----GLFIPGFGGSNVRKSRERRDVENVDPYGGLISADKLAWVLRRLADTAEQFHRWGDEL 565
[Close]
BLAST of EMLSAG00000008675 vs. C. finmarchicus
Match: gi|592906331|gb|GAXK01052044.1| (TSA: Calanus finmarchicus comp28951_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 7.068e-1
Identity = 21/89 (23.60%), Postives = 42/89 (47.19%), Query Frame = 0 
Query:  138 FGSIFKSEYVSIFLAQQWFHLITGTGCWILAAGLY-HTLGNDNMXRSAPQEPWETLIP-----NSNTLTFIFRELADATEKYSLHHDEL 220
            +  + +SE +++ + Q   + +  T  W    GL+    G  N+ +S  +   E + P     +++ L ++ R LAD  E++    DEL
Sbjct:   36 YSGVMQSENIAVHVIQNLVNFLASTLVW----GLFIPGFGGSNVRKSRERRDVENVDPYGGLISADKLAWVLRRLADTAEQFHRWGDEL 290
[Close]
BLAST of EMLSAG00000008675 vs. C. finmarchicus
Match: gi|592906332|gb|GAXK01052043.1| (TSA: Calanus finmarchicus comp28951_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 7.109e-1
Identity = 21/89 (23.60%), Postives = 42/89 (47.19%), Query Frame = 0 
Query:  138 FGSIFKSEYVSIFLAQQWFHLITGTGCWILAAGLY-HTLGNDNMXRSAPQEPWETLIP-----NSNTLTFIFRELADATEKYSLHHDEL 220
            +  + +SE +++ + Q   + +  T  W    GL+    G  N+ +S  +   E + P     +++ L ++ R LAD  E++    DEL
Sbjct:   36 YSGVMQSENIAVHVIQNLVNFLASTLVW----GLFIPGFGGSNVRKSRERRDVENVDPYGGLISADKLAWVLRRLADTAEQFHRWGDEL 290
[Close]
BLAST of EMLSAG00000008675 vs. C. finmarchicus
Match: gi|592809827|gb|GAXK01144741.1| (TSA: Calanus finmarchicus comp58566_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.821e+0
Identity = 23/84 (27.38%), Postives = 39/84 (46.43%), Query Frame = 0 
Query:  147 VSIFLAQQWFHLITGTGCWILAAGLYHTLGNDNMXRSAPQEPW--------ETLIP--NSNTLTFIFRELADATEKYSLHHDEL 220
            V+ +L Q W   I  T  W +  GLY      +   +A  + +        E+++   +S T+  I R LADA + ++  H+EL
Sbjct:  175 VATYLTQMWIANIMQTFGWAIVGGLYSASTGRSFQETARIDDFEDQEISQSESVMSSIDSKTVASILRGLADAADNWA--HNEL 420
[Close]
BLAST of EMLSAG00000008675 vs. L. salmonis peptides
Match: EMLSAP00000008675 (pep:novel supercontig:LSalAtl2s:LSalAtl2s537:354031:354768:-1 gene:EMLSAG00000008675 transcript:EMLSAT00000008675 description:"maker-LSalAtl2s537-augustus-gene-3.32")

HSP 1 Score: 452.21 bits (1162), Expect = 7.200e-163
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0 
Query:    1 MKPCMFNCSCFLVVLAILLSSHHGVEAGNGRHSDRNHYGDLKVXEDILSTFQRASHRKLEKEEEFRHFKEQEEQXAKKIESRINKLVSPKLDQMFKITSEKIVEKIIRPVINAPERLRATSFGKKDYESSSRLILSNFGSIFKSEYVSIFLAQQWFHLITGTGCWILAAGLYHTLGNDNMXRSAPQEPWETLIPNSNTLTFIFRELADATEKYSLHHDEL 220
            MKPCMFNCSCFLVVLAILLSSHHGVEAGNGRHSDRNHYGDLKVXEDILSTFQRASHRKLEKEEEFRHFKEQEEQXAKKIESRINKLVSPKLDQMFKITSEKIVEKIIRPVINAPERLRATSFGKKDYESSSRLILSNFGSIFKSEYVSIFLAQQWFHLITGTGCWILAAGLYHTLGNDNMXRSAPQEPWETLIPNSNTLTFIFRELADATEKYSLHHDEL
Sbjct:    1 MKPCMFNCSCFLVVLAILLSSHHGVEAGNGRHSDRNHYGDLKVXEDILSTFQRASHRKLEKEEEFRHFKEQEEQXAKKIESRINKLVSPKLDQMFKITSEKIVEKIIRPVINAPERLRATSFGKKDYESSSRLILSNFGSIFKSEYVSIFLAQQWFHLITGTGCWILAAGLYHTLGNDNMXRSAPQEPWETLIPNSNTLTFIFRELADATEKYSLHHDEL 220
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008675 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000008675 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592954352|gb|GAXK01004201.1|1.282e-123.40TSA: Calanus finmarchicus comp255912_c2_seq4 trans... [more]
gi|592954353|gb|GAXK01004200.1|1.381e-123.40TSA: Calanus finmarchicus comp255912_c2_seq3 trans... [more]
gi|592906321|gb|GAXK01052054.1|2.797e-123.60TSA: Calanus finmarchicus comp28951_c6_seq8 transc... [more]
gi|592906323|gb|GAXK01052052.1|4.712e-123.60TSA: Calanus finmarchicus comp28951_c6_seq6 transc... [more]
gi|592906326|gb|GAXK01052049.1|6.725e-123.60TSA: Calanus finmarchicus comp28951_c6_seq3 transc... [more]
gi|592906331|gb|GAXK01052044.1|7.068e-123.60TSA: Calanus finmarchicus comp28951_c1_seq2 transc... [more]
gi|592906332|gb|GAXK01052043.1|7.109e-123.60TSA: Calanus finmarchicus comp28951_c1_seq1 transc... [more]
gi|592809827|gb|GAXK01144741.1|1.821e+027.38TSA: Calanus finmarchicus comp58566_c1_seq1 transc... [more]
back to top
BLAST of EMLSAG00000008675 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000086757.200e-163100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s537:35403... [more]
back to top
BLAST of EMLSAG00000008675 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000008675 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000008675 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000008675 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s537supercontigLSalAtl2s537:354031..354768 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s537-augustus-gene-3.32
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008675 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008675EMLSAT00000008675-704522Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s537:354031..354768-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008675-691441 ID=EMLSAG00000008675-691441|Name=EMLSAG00000008675|organism=Lepeophtheirus salmonis|type=gene|length=738bp|location=Sequence derived from alignment at LSalAtl2s537:354031..354768- (Lepeophtheirus salmonis)
ATGAAACCCTGTATGTTTAATTGCTCATGTTTCCTAGTTGTTCTTGCAAT
CCTACTCTCTTCTCATCATGGCGTAGAGGCTGGAAATGGTCGTCATTCAG
ATAGGGTAATGATTCAAATAGTGACAAATATCTTGAAGTTTATTTCTTAT
TATTTTTTTTTTCAAACCATTCCATGACAGAATCATTATGGAGATTTGAA
AGTAAAKGAGGACATTCTATCCACCTTTCAAAGAGCATCTCATCGCAAAT
TAGAAAAAGAAGAAGAGTTCCGACATTTCAAAGAGCAAGAGGAACAAMCA
GCCAAGAAAATAGAATCTCGTATCAATAAACTTGTATCTCCAAAATTAGA
TCAAATGTTTAAAATTACGAGTGAGAAAATTGTTGAGAAAATCATTCGTC
CTGTCATCAATGCCCCAGAGCGACTAAGAGCCACTTCTTTCGGGAAAAAG
GACTACGAGTCTTCGAGTCGTCTCATTCTTTCCAATTTTGGATCTATTTT
CAAATCGGAATATGTTTCTATTTTCTTAGCACAGCAGTGGTTTCACCTTA
TCACGGGAACTGGGTGTTGGATACTAGCTGCTGGGTTATATCATACATTA
GGAAATGACAACATGGKACGTTCAGCACCACAAGAGCCATGGGAAACCCT
CATTCCGAACTCAAATACCCTTACTTTTATATTTCGTGAGCTTGCTGACG
CTACAGAGAAATATAGCCTTCATCATGATGAATTATGA
back to top
Add to Basket