EMLSAG00000008966, EMLSAG00000008966-691732 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008966
Unique NameEMLSAG00000008966-691732
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000008966 vs. C. finmarchicus
Match: gi|592902867|gb|GAXK01055508.1| (TSA: Calanus finmarchicus comp84190_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 2.114e+0
Identity = 17/64 (26.56%), Postives = 30/64 (46.88%), Query Frame = 0 
Query:   11 SDDILEWLLGDEKVASKWK---------ELAIRLHLEPCIPPIDQNISIKRKKFDKQKLKEFMS 65
            S  ++ W+  D++V   W          EL + LH+  C+PP    ++I+   F  + LKE  +
Sbjct: 1265 SKGVMYWMWRDKRVQDNWALLYAQRIALELNVPLHVAVCVPPQLGEMTIRHYTFMLEGLKEVAT 1456
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BLAST of EMLSAG00000008966 vs. L. salmonis peptides
Match: EMLSAP00000008966 (pep:novel supercontig:LSalAtl2s:LSalAtl2s55:168120:172225:1 gene:EMLSAG00000008966 transcript:EMLSAT00000008966 description:"maker-LSalAtl2s55-augustus-gene-2.11")

HSP 1 Score: 736.873 bits (1901), Expect = 0.000e+0
Identity = 364/364 (100.00%), Postives = 364/364 (100.00%), Query Frame = 0 
Query:    1 MSIYDDHSPISDDILEWLLGDEKVASKWKELAIRLHLEPCIPPIDQNISIKRKKFDKQKLKEFMSVWRRASPKTYTQSTLIRVLGQVGCTDMINWLILLRTGDSRKKIEISSLIDASRSTTPLSYSPYSWYSNGGGSNEDRPESSRSFNSDDRDSSPSRPLSSCSSSETLRKTMTKTITTRTIEKRFYXPHSFGQHSLNSRIHSQPLFNNSTPKNLHQQQPLPSTASFHRRQYNNHVRGDLHSSRDVSPVASSARSSSLKGSQSHLVNTEGXAGGGASSPCXSLSPASTLTTRXGSLGKPHKVVSFKDTTETYDNYNNEEAYSSNKSLDSLPELLEPLPKGISMDKYFDNLISMITDAAEDLKV 364
            MSIYDDHSPISDDILEWLLGDEKVASKWKELAIRLHLEPCIPPIDQNISIKRKKFDKQKLKEFMSVWRRASPKTYTQSTLIRVLGQVGCTDMINWLILLRTGDSRKKIEISSLIDASRSTTPLSYSPYSWYSNGGGSNEDRPESSRSFNSDDRDSSPSRPLSSCSSSETLRKTMTKTITTRTIEKRFYXPHSFGQHSLNSRIHSQPLFNNSTPKNLHQQQPLPSTASFHRRQYNNHVRGDLHSSRDVSPVASSARSSSLKGSQSHLVNTEGXAGGGASSPCXSLSPASTLTTRXGSLGKPHKVVSFKDTTETYDNYNNEEAYSSNKSLDSLPELLEPLPKGISMDKYFDNLISMITDAAEDLKV
Sbjct:    1 MSIYDDHSPISDDILEWLLGDEKVASKWKELAIRLHLEPCIPPIDQNISIKRKKFDKQKLKEFMSVWRRASPKTYTQSTLIRVLGQVGCTDMINWLILLRTGDSRKKIEISSLIDASRSTTPLSYSPYSWYSNGGGSNEDRPESSRSFNSDDRDSSPSRPLSSCSSSETLRKTMTKTITTRTIEKRFYXPHSFGQHSLNSRIHSQPLFNNSTPKNLHQQQPLPSTASFHRRQYNNHVRGDLHSSRDVSPVASSARSSSLKGSQSHLVNTEGXAGGGASSPCXSLSPASTLTTRXGSLGKPHKVVSFKDTTETYDNYNNEEAYSSNKSLDSLPELLEPLPKGISMDKYFDNLISMITDAAEDLKV 364
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008966 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008966 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592902867|gb|GAXK01055508.1|2.114e+026.56TSA: Calanus finmarchicus comp84190_c3_seq1 transc... [more]

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BLAST of EMLSAG00000008966 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000089660.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s55:168120... [more]
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BLAST of EMLSAG00000008966 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008966 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008966 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008966 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s55supercontigLSalAtl2s55:168120..172225 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s55-augustus-gene-2.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008966 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008966EMLSAT00000008966-704813Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s55:168120..172225+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008966-691732 ID=EMLSAG00000008966-691732|Name=EMLSAG00000008966|organism=Lepeophtheirus salmonis|type=gene|length=4106bp|location=Sequence derived from alignment at LSalAtl2s55:168120..172225+ (Lepeophtheirus salmonis)
AGCGGACGCAAAAGAGAGTCATCATCAATAGAGAAGCGTGCGCCAAGCCC
GCGTTTCTCAGTTATATGAAAGATAATTTTTAAGTTCCATGACTAGAGTC
ATTTTTAAAGTCAGTTCACGTTCTCATACCATACTTTGGTGATGTACAGC
TTTTTATCAAGTGATTCACGGTGATTCATTTGGAGTAAATAAATTCATTT
AATAGACAAAATGAGTATCTATGATGATCATAGTCCTATAAGTGACGACA
TACTAGAGTGGCTATTGGGAGATGAGAAGGTGGCCTCGAAATGGAAGGAA
CTTGCCATCCGTCTTCATCTAGAACCCTGCATTCCTCCCATCGATCAAAA
CATTTCCATCAAAAGGAAAAAGTTTGATAAACAGAAACTCAAGGAATTCA
TGAGTGTTTGGAGACGGGCCTCTCCAAAGACTTATACTCAAAGTACTTTG
ATTCGTGTCTTGGGACAAGTAGGATGCACCGACATGATCAATTGGCTCAT
TCTGCTTCGAACGGGAGATTCGAGGAAGAAGATTGAGATATCCTCGCTTA
TTGATGCGAGTCGAAGCACGACTCCACTTTCCTACTCCCCCTATTCATGG
TATTCCAACGGAGGAGGAAGTAACGAGGATAGACCCGGTGAGTCAACCAG
CAATAACTCTACTAATTATTATTATTATTATTATTATAAACTACTAATTA
TCATTAAGTTGTTTGTCTACATATATAAATACATTTTTAAAAGCCCCTCT
CTTGAGTCTCTTATGTGTGTACGCAAACCTTATTATTAGTAGTAATAAAT
TGTAATAATTGCGTAGTTTTAAAAAATAAATAATAATTACAATGAGTGTG
TTGAAGTGAAGGGTTTTTGGGTGCATTTATCCTTTTATTATCATCTCTCT
TTGTTGTATATCATATATGTGGCCTGTACATACAAAACCAAGCTAGAATG
ATTTGTCTCAAAATTGAATCTGGATTACATTAACAAAATATCTAAGCAAG
TTTTTCGGAAGGTTTACCGCCTTTAACCCGCGTTCCTTACAAGTACACAA
TTGTAACACCTTTCCTATCTGTCTAAGTACTTTGTACATTGGCCTTATCA
TGGAATTCTAGACACATGGAATAATCACAGATATAACTTAGTTTGTTTTC
TTTATTTCACCTCTTGAAGGAATGTCGTAAAAAATGAGGGAGACCAATGA
TGTAAATTCGATGTGTTTTTTAGCCGGCCCCTTCATTTGTATTTTGGTAG
TATAAAGAAGGAATTTTCTTTTCCTTGGTTGTAGTCATTATTATTTAATT
CCTGAGTAGTGAATATCCTTTCCTAAATAGATTCAATTATATTCTAAACC
CTGTTTGAACTTTTGTGTATGCTCATAAAAGACGGTGAGTAACCGTCTTG
AGATTTGTTGTGGAGTTAAAATTGTAAGTCCTTGTTGGACTCAGAGTAGA
ATTGGAGATCGACATCGGAGTCATTCCAGCAAATGTCCTTGTTTATATCT
TTTTCTCCTTCCTCTCTTGACATAGCTGATTGTAGCTCATCTAATGAAAC
GTTCTGAGTATTATTATTTCCCTCTTCCAAAACATTCTTCAAATTGTCAG
GGTTACCATGTTGTTTTTCGGTGTTGTTCTATTAAAATGCCCATTCCACA
ATAGATTTTCACACCTTTGACACGGACTCTTTTTTTCAACCAGTCGCTAC
GTGTTTATATTCTGCTCATGTGGGGTAAAAAAATATGCTTGATTATTCCA
GGTCTCTAGAATTCTATATTCTATATCTTCTATGAAAAAATTATTCTTCT
TAAACCTTAGGCAAATAGCACTTAAGTAATTAGTTGTAAAAAATCATTTG
AAATGAATATATTTTATGTATATGATTGGAGTCGAATTAAGTCTTATGGA
TCAAAAGAAGGTTCTCAAACTATAGTTTACATTTTTAAATATCTCATAAA
TTTAAATACAAAGCCTTATAATTACCCAAAATAATTTGTGTATGAAATAT
AGCACTGTGCCTTATAAGGGGTTTGTTATTAGGGGGGAGGAGGGCCTGGT
TGGAGTAGCTATGAATGACTCACCAATAATGAAGCGATATATACAAAGGT
GGTCTTGCAAAGTGTCTGACCTCAACATGAAGATAGTAGCACTCGTAAAT
AAAAGTTAAATCAATCTATCTAGCATCTTTTGCCAGTTATTCACCAAAGT
TTCAGGCATTTTGGACTCGTTTTGTAGCAGTTGTTTGAGGGAGCTGCTGT
GAGTTTGTTTGAGTGAAAATGGACAAAATCGAGCTGTAATTCAATATTTG
TTGTTCAAAATGGCTGAAACTTTGGTAATTAAGTGTCAACAGATTCTAAA
CTAGCTGTTTCAGCAATTTTGGACAACAAATATTTAATTACAGCTCGATA
CTCGACTTGATCCATTTTCACAAAAACAATCACATCAACTGTTACATAAC
AACTGATCGTCCAAAATGACTGAAACTTTGGTGAGTAACTGTGATCAGAT
ACTAGATAGATGTGATTAGCTTTTATTTAAAAGTGATTCCATCTTCACGT
TGAGGTTGGAAACATTTCAGATCCCCTTCGCATTACTCAAGGAATTCTAT
AGACCTGGAATAATCATGCAGAATTGATATTATTATATTAGAGGAATATA
AAGTGGTTAAAATAAGGGGGGGGGGGGGGGAAATAGTCAACCTCTTTTTT
ATGCCATTCCTTCAGAAGGGGGAATTTAAATAATTATTGGTGATGGCAGC
CTTCAAAATATTCAGGTCTAGGTTAAGATGGGATGTAAAAAAAAAAAAAA
CACAATATAAAGGACATTTCTCCTCCTTTTCTTGACGTTTCTATTCCCAT
ATTTTCAATGTACCATTGAATTGAGAAAATGTATGCTCCCAAATAAAGGA
TTTCTACTCATAACATTTACGGATTACATACCTATTTTAGAGCCATTCAA
GGAGAAAGACAATTATTTTTATACACGTACATATATTACAGCAAATAGAG
AGAGAGAGAGTTGAAAAATAGCTAGAACAACATTACATACACAGAGACCT
CTAAAAATGAAATATGGCACACACATAAATCAGAGCTCTTCCCTTCCACC
TCTTCTTCTTTGGGGAAGATAGGAAAGATTTATATGGTGATGACATTTTG
AAACAACCTCAAAAAATAATAATAATGTACTTATATTTTTTTTTACAGAG
AGCTCTCGTTCCTTTAACTCCGATGATCGAGATTCCTCACCGAGTCGACC
CCTAAGCAGCTGCAGCAGCTCAGAAACCCTTCGTAAAACAATGACCAAAA
CCATTACCACACGTACAATTGAGAAACGCTTCTACKCACCTCACTCCTTT
GGGCAACATTCCCTCAACTCCCGGATCCATTCTCAGCCCTTATTCAACAA
CAGCACACCAAAGAATCTTCATCAACAACAACCTCTGCCCTCCACAGCCT
CCTTCCATCGACGACAATACAACAACCATGTCCGAGGAGATCTACATAGT
AGTAGAGATGTGTCCCCTGTAGCGAGCAGTGCCCGCTCTTCCTCCCTGAA
AGGCAGTCAGAGCCATCTAGTCAATACCGAAGGGMATGCTGGCGGTGGCG
CCTCTTCACCTTGTTKCTCCCTCTCTCCGGCCTCAACGCTTACCACTCGG
AGMGGGAGCCTTGGCAAACCACATAAAGTAGTTTCCTTTAAAGACACTAC
TGAAACCTATGACAATTACAATAACGAGGAAGCATATTCATCGAATAAGT
CACTCGACTCCCTTCCGGAGTTATTAGAGCCTCTTCCGAAAGGAATTTCC
ATGGATAAATACTTTGATAATCTGATATCCATGATCACAGACGCTGCAGA
AGATCTCAAAGTATGAAGGAACTTCTTTGTATGTGATCTTACAGGGGTGT
CCGCAGGGGGTGGCTGGAGATGCATTATCCCTCTCCCAATAAAGGAATTT
TTGCGTTTAACTATAATTTTTTTTGGTAGCTATGGATCTTTGAAAAAAAA
AATTCGAAAAATCTTATACTAGAAATTTCATTTTTGGTGAATAGGTATGG
ATTTTGAATTTTTTTTCGAAAAAACTAACTCTTTTGTGAACAGCTCTTAA
TTTTTG
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