EMLSAG00000008966, EMLSAG00000008966-691732 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000008966 vs. C. finmarchicus
Match: gi|592864094|gb|GAXK01093468.1| (TSA: Calanus finmarchicus comp1880288_c0_seq4 transcribed RNA sequence) HSP 1 Score: 72.0182 bits (175), Expect = 2.961e-14 Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 0 Query: 10 ISDDILEWLLGDEKVASKWKELAIRLHLEPCIPPIDQNISIKR--KKFDKQKLKEFMSVWRRASPKTYTQSTLIRVLGQVGCTDMINWLILL 99 I+ D+ EWLL D V S W + A LHL+ IP ++S+ R K D KL + M +W+R P TYT TLI VL Q+G DM W+ L+ Sbjct: 45 ITADLREWLLADSYVCSHWTKFAHSLHLQSSIP----SLSVTRPDKWSDSHKLSQLMDLWKRDQPDTYTVRTLIIVLRQLGLRDMEQWIRLM 308
BLAST of EMLSAG00000008966 vs. C. finmarchicus
Match: gi|592761629|gb|GAXK01192784.1| (TSA: Calanus finmarchicus comp912137_c0_seq1 transcribed RNA sequence) HSP 1 Score: 75.485 bits (184), Expect = 3.077e-14 Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = 0 Query: 10 ISDDILEWLLGDEKVASKWKELAIRLHLEPCIPPIDQNISIKRKKFDKQKLKEFMSVWRRASPKTYTQSTLIRVLGQVGCTDMINWLILL 99 I+ D++EWL+ D KV+S W+ +A L L IP ++ +S + +K D Q++KE + +WR P TYT TL+ +L +G DM W+ L+ Sbjct: 88 ITPDLVEWLVSDPKVSSSWRSMAKHLSLSIYIPSLE--VSRRNRKTDSQRMKELLIIWRSVRPGTYTVETLLDMLDILGMKDMYEWIHLM 351
BLAST of EMLSAG00000008966 vs. C. finmarchicus
Match: gi|592902453|gb|GAXK01055922.1| (TSA: Calanus finmarchicus comp3520821_c0_seq1 transcribed RNA sequence) HSP 1 Score: 65.0846 bits (157), Expect = 5.484e-12 Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 0 Query: 8 SPISDDILEWLLGDEKVASKWKELAIRLHLEPCIPPIDQNISIKRKKFDKQKLKEFMSVWRRASPKTYTQSTLIRVLGQVGCTDMINWLILL 99 S ++ D+L+WL+ D+KV+SKWK A L L I ID+ +R + KL+ MS+W+ P T+T L+ +L G TDM W+ L+ Sbjct: 20 SDLTPDLLQWLVVDDKVSSKWKHFAHHLGLGEYISNIDRKEWRRRGVGESDKLESLMSMWKEKKPDTFTIERLLTILALEGMTDMWLWMKLM 295
BLAST of EMLSAG00000008966 vs. C. finmarchicus
Match: gi|592758547|gb|GAXK01195866.1| (TSA: Calanus finmarchicus comp800449_c0_seq2 transcribed RNA sequence) HSP 1 Score: 56.6102 bits (135), Expect = 4.600e-8 Identity = 36/114 (31.58%), Postives = 56/114 (49.12%), Query Frame = 0 Query: 1 MSIYDDHSPISDDILEWLLGDEKVASKWKELAIRLHLEPCIPPID----QNISIKRKKFDKQKLKEFMSVWRRASPKTYTQSTLIRVLGQVGCTDMINWLILLRTGDSRKKIEI 110 +S Y + I+ DI++WLL DE V KW+ + RL L I I+ S +R +K KL+ + +W+ TY S L VL + G DM W+ ++ R+ +I Sbjct: 63 ISDYMMAAEITPDIVQWLLMDENVVRKWRSIGGRLSLSEYIGDIECWRGGGRSRRRGWREKDKLEMLLRIWKEKKQNTYCVSVLKTVLAKEGLNDMCMWINIITKNLGRRADKI 404
BLAST of EMLSAG00000008966 vs. C. finmarchicus
Match: gi|592758548|gb|GAXK01195865.1| (TSA: Calanus finmarchicus comp800449_c0_seq1 transcribed RNA sequence) HSP 1 Score: 55.8398 bits (133), Expect = 7.009e-8 Identity = 36/114 (31.58%), Postives = 56/114 (49.12%), Query Frame = 0 Query: 1 MSIYDDHSPISDDILEWLLGDEKVASKWKELAIRLHLEPCIPPID----QNISIKRKKFDKQKLKEFMSVWRRASPKTYTQSTLIRVLGQVGCTDMINWLILLRTGDSRKKIEI 110 +S Y + I+ DI++WLL DE V KW+ + RL L I I+ S +R +K KL+ + +W+ TY S L VL + G DM W+ ++ R+ +I Sbjct: 63 ISDYMMAAEITPDIVQWLLMDENVVRKWRSIGGRLSLSEYIGDIECWRGGGRSRRRGWREKDKLEMLLRIWKEKKQNTYCVSVLKTVLAKEGLNDMCMWINIITKNLGRRADKI 404
BLAST of EMLSAG00000008966 vs. C. finmarchicus
Match: gi|592883677|gb|GAXK01074698.1| (TSA: Calanus finmarchicus comp727837_c0_seq1 transcribed RNA sequence) HSP 1 Score: 54.6842 bits (130), Expect = 2.295e-7 Identity = 28/90 (31.11%), Postives = 45/90 (50.00%), Query Frame = 0 Query: 10 ISDDILEWLLGDEKVASKWKELAIRLHLEPCIPPIDQNISIKRKKFDKQKLKEFMSVWRRASPKTYTQSTLIRVLGQVGCTDMINWLILL 99 ++ D+ EWLL D+KV +W+ LA RL L IP I+ + + D +L+ + +W+ P YT VL G M W+ ++ Sbjct: 1033 LTPDLAEWLLADKKVCQRWRSLARRLSLGCHIPSIE-----RIRGDDSAQLRMVLRMWQATFPDGYTVRGCKNVLAAEGLHHMCLWMSMM 1287
BLAST of EMLSAG00000008966 vs. C. finmarchicus
Match: gi|592886950|gb|GAXK01071425.1| (TSA: Calanus finmarchicus comp2141005_c0_seq1 transcribed RNA sequence) HSP 1 Score: 50.8322 bits (120), Expect = 3.742e-6 Identity = 30/99 (30.30%), Postives = 52/99 (52.53%), Query Frame = 0 Query: 10 ISDDILEWLLGDEKVASKWKELAIRLHLEPCIPPID-QNISIKRKKFDKQKLKEFMSVWRRASPKTYTQSTLIRVLGQVGCTDMINWLILLRTGDSRKK 107 I+ DI +WLL D +V S+WK +A L L I+ Q+ + + + +++W+ +P TY L VL + G +DM W+ ++ T D+ +K Sbjct: 812 ITPDIEQWLLADTEVVSRWKNIARLLDLAEDFQDIESQSCDVNA----RDRFAMLLTMWKERNPVTYNVRMLETVLAREGLSDMWMWISII-TQDNHQK 1093
BLAST of EMLSAG00000008966 vs. C. finmarchicus
Match: gi|592851448|gb|GAXK01106096.1| (TSA: Calanus finmarchicus comp119321_c0_seq1 transcribed RNA sequence) HSP 1 Score: 47.7506 bits (112), Expect = 4.439e-5 Identity = 32/101 (31.68%), Postives = 47/101 (46.53%), Query Frame = 0 Query: 4 YDDHSPISDDILEWLLGDEKVASKWKELAIRLHLEPCIPPIDQNISIKRKKFDKQKLKEFMSVWRRASPKTYTQSTLIRVLGQVGCTDMINWLILLRTGDS 104 Y I+ D++EWLL D+KV WK LA RL+ + ++ K + L+ + +W A P +Y L RVL G M W+ L+ DS Sbjct: 1365 YSGSMSITPDLIEWLLADQKVCQSWKCLASRLNFGCHLGSLE-----KHGGGEAGSLRLLLRLWSTAKPASYNVRGLKRVLAAEGLHHMWLWISLMTQKDS 1652
BLAST of EMLSAG00000008966 vs. C. finmarchicus
Match: gi|592764422|gb|GAXK01190146.1| (TSA: Calanus finmarchicus comp1727172_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.5134 bits (101), Expect = 2.860e-4 Identity = 22/65 (33.85%), Postives = 39/65 (60.00%), Query Frame = 0 Query: 50 IKRKKFDKQKLKEFMSVWRRASPKTYTQSTLIRVLGQVGCTDMINWLILLRTGDSRKKIEISSLI 114 +++ + ++ KLK + +WR P++Y L VL Q G DM+ W+ L+ T +S K E++S+I Sbjct: 361 LRQYEDERHKLKMVIQLWRDERPESYNLKELKTVLAQEGLHDMLMWINLM-TQESPIKSEVTSVI 552
BLAST of EMLSAG00000008966 vs. C. finmarchicus
Match: gi|592851447|gb|GAXK01106097.1| (TSA: Calanus finmarchicus comp119321_c0_seq2 transcribed RNA sequence) HSP 1 Score: 37.7354 bits (86), Expect = 5.153e-2 Identity = 16/34 (47.06%), Postives = 21/34 (61.76%), Query Frame = 0 Query: 4 YDDHSPISDDILEWLLGDEKVASKWKELAIRLHL 37 Y I+ D++EWLL D+KV WK LA RL+ Sbjct: 90 YSGSMSITPDLIEWLLADQKVCQSWKCLASRLNF 191
BLAST of EMLSAG00000008966 vs. L. salmonis peptides
Match: EMLSAP00000008966 (pep:novel supercontig:LSalAtl2s:LSalAtl2s55:168120:172225:1 gene:EMLSAG00000008966 transcript:EMLSAT00000008966 description:"maker-LSalAtl2s55-augustus-gene-2.11") HSP 1 Score: 736.873 bits (1901), Expect = 0.000e+0 Identity = 364/364 (100.00%), Postives = 364/364 (100.00%), Query Frame = 0 Query: 1 MSIYDDHSPISDDILEWLLGDEKVASKWKELAIRLHLEPCIPPIDQNISIKRKKFDKQKLKEFMSVWRRASPKTYTQSTLIRVLGQVGCTDMINWLILLRTGDSRKKIEISSLIDASRSTTPLSYSPYSWYSNGGGSNEDRPESSRSFNSDDRDSSPSRPLSSCSSSETLRKTMTKTITTRTIEKRFYXPHSFGQHSLNSRIHSQPLFNNSTPKNLHQQQPLPSTASFHRRQYNNHVRGDLHSSRDVSPVASSARSSSLKGSQSHLVNTEGXAGGGASSPCXSLSPASTLTTRXGSLGKPHKVVSFKDTTETYDNYNNEEAYSSNKSLDSLPELLEPLPKGISMDKYFDNLISMITDAAEDLKV 364 MSIYDDHSPISDDILEWLLGDEKVASKWKELAIRLHLEPCIPPIDQNISIKRKKFDKQKLKEFMSVWRRASPKTYTQSTLIRVLGQVGCTDMINWLILLRTGDSRKKIEISSLIDASRSTTPLSYSPYSWYSNGGGSNEDRPESSRSFNSDDRDSSPSRPLSSCSSSETLRKTMTKTITTRTIEKRFYXPHSFGQHSLNSRIHSQPLFNNSTPKNLHQQQPLPSTASFHRRQYNNHVRGDLHSSRDVSPVASSARSSSLKGSQSHLVNTEGXAGGGASSPCXSLSPASTLTTRXGSLGKPHKVVSFKDTTETYDNYNNEEAYSSNKSLDSLPELLEPLPKGISMDKYFDNLISMITDAAEDLKV Sbjct: 1 MSIYDDHSPISDDILEWLLGDEKVASKWKELAIRLHLEPCIPPIDQNISIKRKKFDKQKLKEFMSVWRRASPKTYTQSTLIRVLGQVGCTDMINWLILLRTGDSRKKIEISSLIDASRSTTPLSYSPYSWYSNGGGSNEDRPESSRSFNSDDRDSSPSRPLSSCSSSETLRKTMTKTITTRTIEKRFYXPHSFGQHSLNSRIHSQPLFNNSTPKNLHQQQPLPSTASFHRRQYNNHVRGDLHSSRDVSPVASSARSSSLKGSQSHLVNTEGXAGGGASSPCXSLSPASTLTTRXGSLGKPHKVVSFKDTTETYDNYNNEEAYSSNKSLDSLPELLEPLPKGISMDKYFDNLISMITDAAEDLKV 364 The following BLAST results are available for this feature:
BLAST of EMLSAG00000008966 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000008966 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 11
Pagesback to top
BLAST of EMLSAG00000008966 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000008966 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000008966 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000008966 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000008966 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s55:168120..172225+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000008966-691732 ID=EMLSAG00000008966-691732|Name=EMLSAG00000008966|organism=Lepeophtheirus salmonis|type=gene|length=4106bp|location=Sequence derived from alignment at LSalAtl2s55:168120..172225+ (Lepeophtheirus salmonis)back to top Add to Basket
|