EMLSAG00000008990, EMLSAG00000008990-691756 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008990
Unique NameEMLSAG00000008990-691756
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000008990 vs. C. finmarchicus
Match: gi|592754209|gb|GAXK01200204.1| (TSA: Calanus finmarchicus comp307906_c4_seq25 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 1.889e-1
Identity = 13/28 (46.43%), Postives = 18/28 (64.29%), Query Frame = 0 
Query:   56 DRKFAWNKHIEEELIQEEAFRNERSNSP 83
            D+  + NK   +E+IQE+A  NE SN P
Sbjct:   80 DQILSTNKSTSDEIIQEDALSNEDSNKP 163
[Close]
BLAST of EMLSAG00000008990 vs. C. finmarchicus
Match: gi|592754218|gb|GAXK01200195.1| (TSA: Calanus finmarchicus comp307906_c4_seq16 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 2.321e-1
Identity = 13/28 (46.43%), Postives = 18/28 (64.29%), Query Frame = 0 
Query:   56 DRKFAWNKHIEEELIQEEAFRNERSNSP 83
            D+  + NK   +E+IQE+A  NE SN P
Sbjct:   80 DQILSTNKSTSDEIIQEDALSNEDSNKP 163
[Close]
BLAST of EMLSAG00000008990 vs. C. finmarchicus
Match: gi|592754226|gb|GAXK01200187.1| (TSA: Calanus finmarchicus comp307906_c4_seq8 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 2.601e-1
Identity = 13/28 (46.43%), Postives = 18/28 (64.29%), Query Frame = 0 
Query:   56 DRKFAWNKHIEEELIQEEAFRNERSNSP 83
            D+  + NK   +E+IQE+A  NE SN P
Sbjct:   80 DQILSTNKSTSDEIIQEDALSNEDSNKP 163
[Close]
BLAST of EMLSAG00000008990 vs. C. finmarchicus
Match: gi|592754227|gb|GAXK01200186.1| (TSA: Calanus finmarchicus comp307906_c4_seq7 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 2.614e-1
Identity = 13/28 (46.43%), Postives = 18/28 (64.29%), Query Frame = 0 
Query:   56 DRKFAWNKHIEEELIQEEAFRNERSNSP 83
            D+  + NK   +E+IQE+A  NE SN P
Sbjct:   80 DQILSTNKSTSDEIIQEDALSNEDSNKP 163
[Close]
BLAST of EMLSAG00000008990 vs. C. finmarchicus
Match: gi|592801313|gb|GAXK01153255.1| (TSA: Calanus finmarchicus comp4093634_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.575e+0
Identity = 15/48 (31.25%), Postives = 22/48 (45.83%), Query Frame = 0 
Query:   37 YLDQAVAAVLKRLCPWSTMDRKFAWNKHIEEELIQEEAFRNERSNSPQ 84
            Y  + + A  KR+C    MDR   W  H+ + L     F  +RS  P+
Sbjct:  570 YKQKTLEAAPKRICVLPCMDRLVCWTPHLSQTL-----FEAKRSCFPR 698
[Close]
BLAST of EMLSAG00000008990 vs. C. finmarchicus
Match: gi|592832822|gb|GAXK01124722.1| (TSA: Calanus finmarchicus comp24512_c12_seq4 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 2.258e+0
Identity = 19/46 (41.30%), Postives = 23/46 (50.00%), Query Frame = 0 
Query:   45 VLKRLCPWSTMDRKFAWNKHIEEEL--IQEEAFRNERSNSPQVPSF 88
            V K++C    + RK  W+K   EEL   QEE F    SNS   P F
Sbjct:  429 VHKKICSKGEVARKVKWDKKKREELGQEQEEDFALRMSNSTMSPIF 566
[Close]
BLAST of EMLSAG00000008990 vs. C. finmarchicus
Match: gi|592832823|gb|GAXK01124721.1| (TSA: Calanus finmarchicus comp24512_c12_seq3 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 2.434e+0
Identity = 19/46 (41.30%), Postives = 23/46 (50.00%), Query Frame = 0 
Query:   45 VLKRLCPWSTMDRKFAWNKHIEEEL--IQEEAFRNERSNSPQVPSF 88
            V K++C    + RK  W+K   EEL   QEE F    SNS   P F
Sbjct:  429 VHKKICSKGEVARKVKWDKKKREELGQEQEEDFALRMSNSTMSPIF 566
[Close]
BLAST of EMLSAG00000008990 vs. C. finmarchicus
Match: gi|592832825|gb|GAXK01124719.1| (TSA: Calanus finmarchicus comp24512_c12_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 3.042e+0
Identity = 19/46 (41.30%), Postives = 23/46 (50.00%), Query Frame = 0 
Query:   45 VLKRLCPWSTMDRKFAWNKHIEEEL--IQEEAFRNERSNSPQVPSF 88
            V K++C    + RK  W+K   EEL   QEE F    SNS   P F
Sbjct:  673 VHKKICSKGEVARKVKWDKKKREELGQEQEEDFALRMSNSTMSPIF 810
[Close]
BLAST of EMLSAG00000008990 vs. C. finmarchicus
Match: gi|592832846|gb|GAXK01124698.1| (TSA: Calanus finmarchicus comp24512_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 3.042e+0
Identity = 19/46 (41.30%), Postives = 23/46 (50.00%), Query Frame = 0 
Query:   45 VLKRLCPWSTMDRKFAWNKHIEEEL--IQEEAFRNERSNSPQVPSF 88
            V K++C    + RK  W+K   EEL   QEE F    SNS   P F
Sbjct:  199 VHKKICSKGEVARKVKWDKKKREELGQEQEEDFALRMSNSTMSPIF 336
[Close]
BLAST of EMLSAG00000008990 vs. L. salmonis peptides
Match: EMLSAP00000008990 (pep:novel supercontig:LSalAtl2s:LSalAtl2s562:73390:75784:1 gene:EMLSAG00000008990 transcript:EMLSAT00000008990 description:"snap_masked-LSalAtl2s562-processed-gene-0.2")

HSP 1 Score: 292.738 bits (748), Expect = 1.355e-102
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 
Query:    1 MKXAIVLIISCFALSQARPGGYTAKGGVVDFLKELDYLDQAVAAVLKRLCPWSTMDRKFAWNKHIEEELIQEEAFRNERSNSPQVPSFFTSQQNFAKLAGGLTFGEDASGSLQQTRLSRNAQPSPSRNLYYSSVFEKHAGQ 141
            MKXAIVLIISCFALSQARPGGYTAKGGVVDFLKELDYLDQAVAAVLKRLCPWSTMDRKFAWNKHIEEELIQEEAFRNERSNSPQVPSFFTSQQNFAKLAGGLTFGEDASGSLQQTRLSRNAQPSPSRNLYYSSVFEKHAGQ
Sbjct:    1 MKXAIVLIISCFALSQARPGGYTAKGGVVDFLKELDYLDQAVAAVLKRLCPWSTMDRKFAWNKHIEEELIQEEAFRNERSNSPQVPSFFTSQQNFAKLAGGLTFGEDASGSLQQTRLSRNAQPSPSRNLYYSSVFEKHAGQ 141
[Close]
BLAST of EMLSAG00000008990 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold892_size84543-snap-gene-0.17 (protein:Tk08292 transcript:maker-scaffold892_size84543-snap-gene-0.17-mRNA-1 annotation:"peptidyl-trna hydrolase")

HSP 1 Score: 70.0922 bits (170), Expect = 7.519e-17
Identity = 42/101 (41.58%), Postives = 51/101 (50.50%), Query Frame = 0 
Query:    1 MKXAIVLIISCFALSQARPGGYTAKGGVVDFLKELDYLDQAVAAVLKRLCPWSTMDRKFAWNKHIEEELIQEEAFRNERSNSPQVPSFFTSQQNFAKLAGG 101
            MK      +S F  S A PGGY   GGV     +LDY+D A +A             KFAW+K  E+EL  E   R ER  +  +P FFTSQ+N A L GG
Sbjct:    1 MKVVFFFFLSIFVPSMALPGGYKNLGGVYTPTVQLDYMDAAKSA------------GKFAWSKKFEDELDTESVARGER-KAEYIPQFFTSQENHAALTGG 88
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008990 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000008990 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592754209|gb|GAXK01200204.1|1.889e-146.43TSA: Calanus finmarchicus comp307906_c4_seq25 tran... [more]
gi|592754218|gb|GAXK01200195.1|2.321e-146.43TSA: Calanus finmarchicus comp307906_c4_seq16 tran... [more]
gi|592754226|gb|GAXK01200187.1|2.601e-146.43TSA: Calanus finmarchicus comp307906_c4_seq8 trans... [more]
gi|592754227|gb|GAXK01200186.1|2.614e-146.43TSA: Calanus finmarchicus comp307906_c4_seq7 trans... [more]
gi|592801313|gb|GAXK01153255.1|1.575e+031.25TSA: Calanus finmarchicus comp4093634_c0_seq1 tran... [more]
gi|592832822|gb|GAXK01124722.1|2.258e+041.30TSA: Calanus finmarchicus comp24512_c12_seq4 trans... [more]
gi|592832823|gb|GAXK01124721.1|2.434e+041.30TSA: Calanus finmarchicus comp24512_c12_seq3 trans... [more]
gi|592832825|gb|GAXK01124719.1|3.042e+041.30TSA: Calanus finmarchicus comp24512_c12_seq1 trans... [more]
gi|592832846|gb|GAXK01124698.1|3.042e+041.30TSA: Calanus finmarchicus comp24512_c1_seq1 transc... [more]
back to top
BLAST of EMLSAG00000008990 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000089901.355e-102100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s562:73390... [more]
back to top
BLAST of EMLSAG00000008990 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000008990 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000008990 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000008990 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold892_size84543-snap-gene-0.177.519e-1741.58protein:Tk08292 transcript:maker-scaffold892_size8... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s562supercontigLSalAtl2s562:73390..75784 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s562-processed-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008990 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008990EMLSAT00000008990-704837Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s562:73390..75784+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008990-691756 ID=EMLSAG00000008990-691756|Name=EMLSAG00000008990|organism=Lepeophtheirus salmonis|type=gene|length=2395bp|location=Sequence derived from alignment at LSalAtl2s562:73390..75784+ (Lepeophtheirus salmonis)
AGTCTACGACTGTTATTGAAAGAAATCGCATCTCTCAACGATATATATTT
TTTTAAATCTAGATAAGGTGCTTAACCATACATATATTTAGATCTTCCGA
ATGTTGAGTCAAAAAATAATTTTGTATATTTAAAGGAYCCACACTTCGGA
ATGAAASCTGCCATTGTTCTCATCATCTCTTGCTTTGCTTTGAGCCAAGC
TCGTCCTGGGGGATATACAGCTAAAGGAGGTGTAGTTGACTTTTTGAAGG
AATTGGACTATTTAGATCAAGCCGTGGCTGCTGGTAAGTCCAAGAAAAAT
TCCTTTTAAGTGTACACTTATTAATATGAGATTTATTATCATAAGTCTTA
TAAAATAATACATATGAAACCTTCAGACGTGAAAAATAAGACATTCCTTG
AAGGTTGTTCACATATATTTACAGATGAATGAACTTGGAAATTTTTYTGA
TAAWAAAATGATTTWTGAAAAAATAAAAATCCTTATTTTTTTTTTTTTTT
TTTTTTTTTTGTTAATCCCTTKTKTTYTTCAGTAATKTTTAARCATCACT
TTTGGGTTAGCATTGAACGTTAAGTTTTATTTTTTTGAGTCCAATCTAAT
ACTTCATTCTTTGTGATGTAATCTTTGTAGTATGTGTAACCTAGGCACAT
TCACCACMCCCAATTCAGAAACAAGAAAATATTTTTATTTTTTTTTTTTT
GAGTGTTGAAAAGACTTTGTCCTTGGAGTACAATGGATAGTATTAGGCAC
TAACTTCCGCTGAAAACAGGCAGGAGTTGCTAGTTTTGTTGTTGTTGTGT
CTTGTATTTTTTTCTTTATTTTTCTTCCTTGACACTCCATTTTATCTTTT
CAAATAAATTTAAAATGCCCATCTTTTCTTCCTTACACAACACCATTAAA
GCATAAAAAATCCATTTTACAGGAAAGTTCGCATGGAATAAACATATTGA
GGAGGAACTCATCCAAGAGGAAGCTTTTCGTAACGAAAGATCAAACTCAC
CTCAGGTTCCATCCTTCTTCACAAGTCAACAAAACTTTGCCAAACTAGCT
GGAGGATTGACCTTTGGAGAAGATGCTTCAGGATCACTCCAACAAACTCG
ACTCTCACGTAATGCACAGCCATCACCTTCTCGTAATCTCTATTATAGTA
GCGTCTTTGAAAAACATGCTGGTCAATAAGAAGGAAGGGAGAATCCAGAA
TCTGGAAGTGTTATTATCTATTTGAAAGATTCAACAACGACTTGGATCAA
TCATCAATCCCGTTCATATTATTGACAAAAAGCAAAAAAAAAGTCATTTA
TTATTATTTATTGAGTTTCATTATTTATAATGCATTTATTTAACTATTTC
TTCCCTTTTTTTTTTTTTTGTCAATTTGAGCTGTGAAATGTAAATTCATT
TTTTATAACGAAAAAATATAAACAAAAAATAAACATTTAGTTACTTATTC
TGATTGAAATCGAGACTATGTGACACAGTTCTAAAGTGTATTTACCACAA
AAGGCTGCATATAAATATATAATATATGATTCGTTTTAGTGTGCAGAAAA
TCCCTGAGAATCTCCTCTACTATGGAGTCCTAATAGTTCAAGAAAAATAA
ATTAATGAACTTCATACATTATTCACAGCCTTACTTCACTAAAATAAAAT
TTTACTATGTATTTTCTTGTCTGCTTTCGATTTGTATGTTTCTTATCTCT
TATCAGTGTTCTTAAATTGATTGGTTGTAATTAATGTCTTAACTTTTTTT
TTGTATCACACAACCTTTCATACGAAAAGAAACAGAGAAAAGGTCCAAAA
TCAGTTTAGTAGTTAGACAATTCTTCTCAACTATAGAATTATTATTCAAA
CATTGTTGGGAATTCTTTACAGCTAAAAAAAAGCTCATTCTAATTGAACC
AATCACGTTCAAAACACTGATTAGGGAGGAAAGAAGCAGAAACAGCACAG
CTGACAACAAATACACTCTCTATTAGTGAGGTAACGCCGTGAATAAGATT
TTATTAGGCTTTGAACAATTCCCAAAAATAATTGAATAATAATTTCATAG
CTGTCAAGAATCCATTAAAACCAACTGATTTTCAGACCTTTTTACTCTTT
ATTTTTGGAAGAGCGGTTGAGGACTAGAATAAAAGGTATGACTGGTTTTG
TATGTATGTTAATAGTTCGTAATTCAATATCTATGAATATTTACAAAAAA
GGTATTGTAAAATAATTTATATACAGATCTCAAATAATTTTTGCAACAAA
AGCTAAACATGAATAATAACATTCTTCTGTTTTAAAGATCTCTTCTTTTG
TCATTTCCTTTATTTTTTTAAGTTCAGACGACGAAATGAAACTAGTTCCT
CCATTACAGGGAGACTCAACTATTATGGGCAAAGATCCAATTTGA
back to top
Add to Basket