EMLSAG00000009293, EMLSAG00000009293-692059 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009293
Unique NameEMLSAG00000009293-692059
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000009293 vs. C. finmarchicus
Match: gi|592776723|gb|GAXK01177845.1| (TSA: Calanus finmarchicus comp14041_c7_seq5 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 5.289e-1
Identity = 18/69 (26.09%), Postives = 32/69 (46.38%), Query Frame = 0 
Query:   40 SGEGNVTVTVVDTMDRSSF----VMNSDDEXAGLPVPLSEVVETPNNDYIMNNPIVLNEKNDVILNDDV 104
             G G     +VD+  R S     + N  D     P+PL E+   P   ++  NP  +N+  ++++ D+V
Sbjct:   49 RGRGRSATQLVDSDTRHSLPIGQMGNYQDYLKKQPLPLRELESQPVRQHMFGNPFKINK--NLMMTDEV 249
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BLAST of EMLSAG00000009293 vs. C. finmarchicus
Match: gi|592776726|gb|GAXK01177842.1| (TSA: Calanus finmarchicus comp14041_c7_seq2 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 5.562e-1
Identity = 18/69 (26.09%), Postives = 32/69 (46.38%), Query Frame = 0 
Query:   40 SGEGNVTVTVVDTMDRSSF----VMNSDDEXAGLPVPLSEVVETPNNDYIMNNPIVLNEKNDVILNDDV 104
             G G     +VD+  R S     + N  D     P+PL E+   P   ++  NP  +N+  ++++ D+V
Sbjct:   49 RGRGRSATQLVDSDTRHSLPIGQMGNYQDYLKKQPLPLRELESQPVRQHMFGNPFKINK--NLMMTDEV 249
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BLAST of EMLSAG00000009293 vs. L. salmonis peptides
Match: EMLSAP00000009293 (pep:novel supercontig:LSalAtl2s:LSalAtl2s595:108467:110124:1 gene:EMLSAG00000009293 transcript:EMLSAT00000009293 description:"maker-LSalAtl2s595-augustus-gene-1.10")

HSP 1 Score: 254.988 bits (650), Expect = 8.886e-88
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 
Query:    1 MKGTVLFIVSLAWIATSVXGVPVIQNEETVVPNFILNEESGEGNVTVTVVDTMDRSSFVMNSDDEXAGLPVPLSEVVETPNNDYIMNNPIVLNEKNDVILNDDVILSGEDLTLIENPTLSLDDLLVEEEESDDVILN 137
            MKGTVLFIVSLAWIATSVXGVPVIQNEETVVPNFILNEESGEGNVTVTVVDTMDRSSFVMNSDDEXAGLPVPLSEVVETPNNDYIMNNPIVLNEKNDVILNDDVILSGEDLTLIENPTLSLDDLLVEEEESDDVILN
Sbjct:    1 MKGTVLFIVSLAWIATSVXGVPVIQNEETVVPNFILNEESGEGNVTVTVVDTMDRSSFVMNSDDEXAGLPVPLSEVVETPNNDYIMNNPIVLNEKNDVILNDDVILSGEDLTLIENPTLSLDDLLVEEEESDDVILN 137
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009293 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009293 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592776723|gb|GAXK01177845.1|5.289e-126.09TSA: Calanus finmarchicus comp14041_c7_seq5 transc... [more]
gi|592776726|gb|GAXK01177842.1|5.562e-126.09TSA: Calanus finmarchicus comp14041_c7_seq2 transc... [more]
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BLAST of EMLSAG00000009293 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000092938.886e-88100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s595:10846... [more]
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BLAST of EMLSAG00000009293 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009293 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009293 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009293 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s595supercontigLSalAtl2s595:108467..110124 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s595-augustus-gene-1.10
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009293 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009293EMLSAT00000009293-705140Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s595:108467..110124+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009293-692059 ID=EMLSAG00000009293-692059|Name=EMLSAG00000009293|organism=Lepeophtheirus salmonis|type=gene|length=1658bp|location=Sequence derived from alignment at LSalAtl2s595:108467..110124+ (Lepeophtheirus salmonis)
AGTATACAAGTACATCATGAAAGGAACAGTTCTCTTTATTGTGTCTTTGG
CTTGGATTGCCACTTCTGGTAAGTTGTACTCTGTTCTTCGTCTTTTTTAA
TATACATACCTCTTTTACAATCCAGTGTRGGGAGTACCCGTGATTCAAAA
CGAAGAGACAGTTGTCCGTAAGTATACTCTTAYTTCTCTAGTGATCAAAA
TCGAGTTTATTTTTTATCTCCCACGTTTTTGGTAGATTTATTTTTCTAAA
TGGCTATCAAGGTTAGGGATGGGAAAATTGTCCAGATCCTCGAAGCATAC
ATTTAAAATCAATGTATAGGTTGGATATCTACAAGATATTAGTAGTTATT
TGACCGTTTGGCTAAATAACTAGAGTTGGTCTAATTTAAACACACAAAAA
TTAAAGAGAATAAAGTTACATCTGTTCGATACATTTAAATKGATTTAGAG
ATTATAACAGTTCCTTGTTTTTCTCGAATTTTACTTGAATGACCCTCTAG
GCAGAAACGGTTGTAACAATTAGAAAATATGGAGTTTGAGTCATAAATTT
AGAATATTTTTTATGAGTAAATAACTAGACTTTTTATGATTTTGAATTAT
AATTAAATTACAATGTATTATAATGAATTAAAATGCAAAATTTAATTTAA
AATATATCTTAGTTGATTATTTAATCATTTTTCGGCGTTTTTGAAATATT
GGTTTTTTCCCCATTAGTCCTGTTTGAAGTACTTTATGTCTACAAATTGC
AACAATTTAGAATTTTTACATAACACCGGATCTGATGACACAAATTTTAG
CTGTCTAGTATCATTATCCGTGAGTTGTTTGCGTTCAAATAATTTTGCTA
ATTTCAAATTACGTAAGTGAAGTTATGTTTAGTGAATATAATAAGATTTA
TATTACAGATCATTGATCAGTATTATAGATCGGAGAAATTCCTTCTTTCA
ACCCTATTTGGGCCTCACCCATGCTAAAACAAACATGCTTGATGTGAAGC
ATAATTATATAGGAATAAACTTTGATCAATAAGTCAAAAGATATAAATGA
AAGCAAAATCAATTAGTCCATTATTACAAAAATATTCTTCAAAATGTCTC
AAAGAAACGATGATAAATACCCTTGATTATTTCCTCAATAATTGACATCA
TATCTAGTAATTATAATTCTGTGCTAATATCTTTTTTGATACTTGAGTTT
TACAACTTTCCNGTGGCGTCATATTCACATGTGTATTCAAGTTATGTATG
ATTTATTTTTAGCAAATTTTATTCTTAATGAAGAATCTGGTGAGGGAAAT
GTCACAGTCACCGTGGTAGATACAATGGATAGAAGTTCCTTTGTCATGAA
CTCCGATGATGAGAGMGCTGGTCTTCCAGTTCCCCTTAGTGAAGTCGTGG
AAACCCCCAACAATGACTATATAATGAATAATCCTATCGTTTTAAATGAG
AAAAACGATGTTATTCTGAATGACGATGTTATTCTTAGTGGTGAAGACCT
TACTCTGATTGAAAATCCCACTTTATCATTGGATGATCTTCTAGTTGAAG
AAGAAGAAAGTGATGATGTTATTTTGAACTAAATGTCACAATATCTTTCT
GTATGTCTAATAAACAGATAATAAATATATATAACCCAATGTTTCATTGA
AAAGTCCA
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