EMLSAT00000009293, EMLSAT00000009293-705140 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000009293
Unique NameEMLSAT00000009293-705140
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: host related phenotype, modulation of immune response
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
ExpC EMLSAT00000009293 Unknown both
  1. Copepodid
  2. Copepodid
 -Missing-
host related phenotype, modulation of immune response 		15.08.2017 - 10:05
21.08.2017 - 10:09
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
ExpD EMLSAT00000009293 Unknown both
  1. Adult
  2. Adult
 -Missing-
no visible phenotype 		11.10.2017 - 10:05
20.10.2017 - 10:09
ExpH - EMLSAT000000009293 Unknown both
  1. Copepodid
  2. Copepodid
 -Missing-
no visible phenotype 		13.05.2018 - 09:51
16.05.2018 - 09:54
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s595supercontigLSalAtl2s595:108467..110124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000009293 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000009293EMLSAG00000009293-692059Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000041227EMLSAE00000041227-750155Lepeophtheirus salmonisexon
EMLSAE00000041228EMLSAE00000041228-750156Lepeophtheirus salmonisexon
EMLSAE00000041229EMLSAE00000041229-750157Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto772353auto772353Lepeophtheirus salmonispolypeptide
EMLSAP00000009293EMLSAP00000009293Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000009293

>EMLSAP00000009293 ID=EMLSAP00000009293|Name=EMLSAP00000009293|organism=Lepeophtheirus salmonis|type=polypeptide|length=137bp
MKGTVLFIVSLAWIATSVXGVPVIQNEETVVPNFILNEESGEGNVTVTVV
DTMDRSSFVMNSDDEXAGLPVPLSEVVETPNNDYIMNNPIVLNEKNDVIL
NDDVILSGEDLTLIENPTLSLDDLLVEEEESDDVILN
back to top

mRNA from alignment at LSalAtl2s595:108467..110124+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000009293-705140 ID=EMLSAT00000009293-705140|Name=EMLSAT00000009293|organism=Lepeophtheirus salmonis|type=mRNA|length=1658bp|location=Sequence derived from alignment at LSalAtl2s595:108467..110124+ (Lepeophtheirus salmonis)
AGTATACAAGTACATCATGAAAGGAACAGTTCTCTTTATTGTGTCTTTGG
CTTGGATTGCCACTTCTGGTAAGTTGTACTCTGTTCTTCGTCTTTTTTAA
TATACATACCTCTTTTACAATCCAGTGTRGGGAGTACCCGTGATTCAAAA
CGAAGAGACAGTTGTCCGTAAGTATACTCTTAYTTCTCTAGTGATCAAAA
TCGAGTTTATTTTTTATCTCCCACGTTTTTGGTAGATTTATTTTTCTAAA
TGGCTATCAAGGTTAGGGATGGGAAAATTGTCCAGATCCTCGAAGCATAC
ATTTAAAATCAATGTATAGGTTGGATATCTACAAGATATTAGTAGTTATT
TGACCGTTTGGCTAAATAACTAGAGTTGGTCTAATTTAAACACACAAAAA
TTAAAGAGAATAAAGTTACATCTGTTCGATACATTTAAATKGATTTAGAG
ATTATAACAGTTCCTTGTTTTTCTCGAATTTTACTTGAATGACCCTCTAG
GCAGAAACGGTTGTAACAATTAGAAAATATGGAGTTTGAGTCATAAATTT
AGAATATTTTTTATGAGTAAATAACTAGACTTTTTATGATTTTGAATTAT
AATTAAATTACAATGTATTATAATGAATTAAAATGCAAAATTTAATTTAA
AATATATCTTAGTTGATTATTTAATCATTTTTCGGCGTTTTTGAAATATT
GGTTTTTTCCCCATTAGTCCTGTTTGAAGTACTTTATGTCTACAAATTGC
AACAATTTAGAATTTTTACATAACACCGGATCTGATGACACAAATTTTAG
CTGTCTAGTATCATTATCCGTGAGTTGTTTGCGTTCAAATAATTTTGCTA
ATTTCAAATTACGTAAGTGAAGTTATGTTTAGTGAATATAATAAGATTTA
TATTACAGATCATTGATCAGTATTATAGATCGGAGAAATTCCTTCTTTCA
ACCCTATTTGGGCCTCACCCATGCTAAAACAAACATGCTTGATGTGAAGC
ATAATTATATAGGAATAAACTTTGATCAATAAGTCAAAAGATATAAATGA
AAGCAAAATCAATTAGTCCATTATTACAAAAATATTCTTCAAAATGTCTC
AAAGAAACGATGATAAATACCCTTGATTATTTCCTCAATAATTGACATCA
TATCTAGTAATTATAATTCTGTGCTAATATCTTTTTTGATACTTGAGTTT
TACAACTTTCCNGTGGCGTCATATTCACATGTGTATTCAAGTTATGTATG
ATTTATTTTTAGCAAATTTTATTCTTAATGAAGAATCTGGTGAGGGAAAT
GTCACAGTCACCGTGGTAGATACAATGGATAGAAGTTCCTTTGTCATGAA
CTCCGATGATGAGAGMGCTGGTCTTCCAGTTCCCCTTAGTGAAGTCGTGG
AAACCCCCAACAATGACTATATAATGAATAATCCTATCGTTTTAAATGAG
AAAAACGATGTTATTCTGAATGACGATGTTATTCTTAGTGGTGAAGACCT
TACTCTGATTGAAAATCCCACTTTATCATTGGATGATCTTCTAGTTGAAG
AAGAAGAAAGTGATGATGTTATTTTGAACTAAATGTCACAATATCTTTCT
GTATGTCTAATAAACAGATAATAAATATATATAACCCAATGTTTCATTGA
AAAGTCCA
back to top
Add to Basket