EMLSAG00000009352, EMLSAG00000009352-692118 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000009352 vs. C. finmarchicus
Match: gi|592920976|gb|GAXK01037399.1| (TSA: Calanus finmarchicus comp682803_c1_seq5 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 1.452e+0 Identity = 14/38 (36.84%), Postives = 21/38 (55.26%), Query Frame = 0
Query: 811 EAFNIFEICINNVWSRAHCPGISIFYTKIACCVHPFAF 848
++F FEIC + WS+ +C +F K + C HP F
Sbjct: 140 QSFQGFEICCCHSWSKDNCECYCLFSEKSSGCDHPHMF 253
BLAST of EMLSAG00000009352 vs. C. finmarchicus
Match: gi|592829876|gb|GAXK01127668.1| (TSA: Calanus finmarchicus comp171849_c1_seq2 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 1.989e+0 Identity = 23/70 (32.86%), Postives = 34/70 (48.57%), Query Frame = 0
Query: 161 THSSHKRTASSEK-DDHWRQIAGFHLALRKDDGQCYKEILNLPSISFSNISHLYPLMNQILSVVMDKQNY 229
HSSH + SSE DD W H R D G ++LN+ +S +SH + +Q+ V D+ +Y
Sbjct: 649 AHSSHHQLGSSEAVDDGWYAGVVHHAGRRIDTGS-QADLLNITILSLQQLSHSMSIPHQLGQVSEDQSSY 855
BLAST of EMLSAG00000009352 vs. C. finmarchicus
Match: gi|592829877|gb|GAXK01127667.1| (TSA: Calanus finmarchicus comp171849_c1_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 2.023e+0 Identity = 23/70 (32.86%), Postives = 34/70 (48.57%), Query Frame = 0
Query: 161 THSSHKRTASSEK-DDHWRQIAGFHLALRKDDGQCYKEILNLPSISFSNISHLYPLMNQILSVVMDKQNY 229
HSSH + SSE DD W H R D G ++LN+ +S +SH + +Q+ V D+ +Y
Sbjct: 730 AHSSHHQLGSSEAVDDGWYAGVVHHAGRRIDTGS-QADLLNITILSLQQLSHSMSIPHQLGQVSEDQSSY 936
BLAST of EMLSAG00000009352 vs. C. finmarchicus
Match: gi|592829875|gb|GAXK01127669.1| (TSA: Calanus finmarchicus comp171849_c1_seq3 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 2.064e+0 Identity = 23/70 (32.86%), Postives = 34/70 (48.57%), Query Frame = 0
Query: 161 THSSHKRTASSEK-DDHWRQIAGFHLALRKDDGQCYKEILNLPSISFSNISHLYPLMNQILSVVMDKQNY 229
HSSH + SSE DD W H R D G ++LN+ +S +SH + +Q+ V D+ +Y
Sbjct: 163 AHSSHHQLGSSEAVDDGWYAGVVHHAGRRIDTGS-QADLLNITILSLQQLSHSMSIPHQLGQVSEDQSSY 369
BLAST of EMLSAG00000009352 vs. C. finmarchicus
Match: gi|592829873|gb|GAXK01127671.1| (TSA: Calanus finmarchicus comp171849_c5_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 2.093e+0 Identity = 23/70 (32.86%), Postives = 34/70 (48.57%), Query Frame = 0
Query: 161 THSSHKRTASSEK-DDHWRQIAGFHLALRKDDGQCYKEILNLPSISFSNISHLYPLMNQILSVVMDKQNY 229
HSSH + SSE DD W H R D G ++LN+ +S +SH + +Q+ V D+ +Y
Sbjct: 582 AHSSHHQLGSSEAVDDGWYAGVVHHAGRRIDTGS-QADLLNITILSLQQLSHSMSIPHQLGQVSEDQSSY 788
BLAST of EMLSAG00000009352 vs. C. finmarchicus
Match: gi|592805446|gb|GAXK01149122.1| (TSA: Calanus finmarchicus comp2565874_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 2.289e+0 Identity = 14/32 (43.75%), Postives = 20/32 (62.50%), Query Frame = 0
Query: 662 SGESLSNMESLEDDEDEFIYQENSNTNTTKEQ 693
+G ++ M +ED ED IYQ++ N TKEQ
Sbjct: 132 TGGEVAGMAEIEDSEDNDIYQDSQAKNITKEQ 227
BLAST of EMLSAG00000009352 vs. C. finmarchicus
Match: gi|592755792|gb|GAXK01198621.1| (TSA: Calanus finmarchicus comp1281873_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 3.648e+0 Identity = 49/241 (20.33%), Postives = 98/241 (40.66%), Query Frame = 0
Query: 237 SLSKQSRGFLKEVLLKVIEIDFNWTDVLDLLKGLSLMTIHKKALNKIRSRNYTNFSIITDLMELSVITETIVGKYYSRSDLMANRLDVLLFITQMFVGFNIPAPFIYRLVDLKIIDLRVEDLLEELQRNEAILDILTNGNFSYLHAIEVISSIATPNKEINVRDYGINDSLGPKCRYDRINLERVNELFKSSLIQGFNTDETIHLLISNFTSCNG-----IRDIIMSMKELEIPLRNITEY 472
S+S Q R E++ V EID D + LKG +L+ I + ++R N + + E+ E S + A + + L T N+ P+IY +D+ + E++++ A DI + +I+ ++ + P D+ + + + E + +S+ Q F ++ +HL I ++ C+G + + S L +PL++ + Y
Sbjct: 2437 SISPQCRDTAHEMIGDVAEIDNIGKDEKNELKGDTLILIANLIDPEGKTRCTENVEVTWNKKEVKDEAERAAFLTMSCGIMEAGKWKLTLQKT------NVKHPYIYE------VDMLFMSIGEDMEKLSAQPDIEQVDLLQGMWSIDQVAQLPLP-------DFYHDQQRASAPFQPKKDNEHKSRHKRSTKDQSFFKNQALHLTIKDWIVCSGGLITLVMTALFSYHTLYLPLKHPSRY 3102
BLAST of EMLSAG00000009352 vs. C. finmarchicus
Match: gi|592778932|gb|GAXK01175636.1| (TSA: Calanus finmarchicus comp3582_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 8.679e+0 Identity = 15/30 (50.00%), Postives = 18/30 (60.00%), Query Frame = 0
Query: 593 MKLFKKNKCKYEKENSRALKGTHFYETCRN 622
MK++ +NK K EK N ALKG H Y N
Sbjct: 871 MKIWMENKAKVEKHNRHALKGMHSYHLAMN 960
BLAST of EMLSAG00000009352 vs. L. salmonis peptides
Match: EMLSAP00000009352 (pep:novel supercontig:LSalAtl2s:LSalAtl2s598:376462:453794:1 gene:EMLSAG00000009352 transcript:EMLSAT00000009352 description:"maker-LSalAtl2s598-augustus-gene-4.6") HSP 1 Score: 1774.6 bits (4595), Expect = 0.000e+0 Identity = 859/859 (100.00%), Postives = 859/859 (100.00%), Query Frame = 0
Query: 1 MNSKDFKQLFSLNKLETLLLLNLPWIFHIVSGSTEVLDPEERREQFHEILLPTFASEEGTRSPPMMIDSTTTMTTIYHWNRSLLIDPISRIHRTNFLKGNDTTTKELCRVFGRKRIHCLKAHLGNIHKDHHCLYHYQCQHGAHCFPSEDKAYICANISMSTHSSHKRTASSEKDDHWRQIAGFHLALRKDDGQCYKEILNLPSISFSNISHLYPLMNQILSVVMDKQNYSFNCLLDSLSKQSRGFLKEVLLKVIEIDFNWTDVLDLLKGLSLMTIHKKALNKIRSRNYTNFSIITDLMELSVITETIVGKYYSRSDLMANRLDVLLFITQMFVGFNIPAPFIYRLVDLKIIDLRVEDLLEELQRNEAILDILTNGNFSYLHAIEVISSIATPNKEINVRDYGINDSLGPKCRYDRINLERVNELFKSSLIQGFNTDETIHLLISNFTSCNGIRDIIMSMKELEIPLRNITEYIISLYQDEATKEYQISLDNYELLSPVDKGFSFLRRLIRHLLQKEFITNSAMKKVLGTEIFKKYVRRVLPTNIYAKYKQRTSIDNFLKKHLNAIDSSIRGTGRTQSTPSIETEKQSTFLKSMKLFKKNKCKYEKENSRALKGTHFYETCRNGVWIKRSCPHSTEEEFDEEELKDTNESGKDEFKENEIEGSGESLSNMESLEDDEDEFIYQENSNTNTTKEQTDESEYSQENDSEGSRKTSSLNQDVIEDEDKSIITYTTLSTSPTETSEVRVESLPGSNTIDVKSKTKSGSPSLQNISSSTSFYLVNKLINEGAKASPSKYTSNRRCSNNGSRQVASGEAFNIFEICINNVWSRAHCPGISIFYTKIACCVHPFAFPCFDNCVIENP 859
MNSKDFKQLFSLNKLETLLLLNLPWIFHIVSGSTEVLDPEERREQFHEILLPTFASEEGTRSPPMMIDSTTTMTTIYHWNRSLLIDPISRIHRTNFLKGNDTTTKELCRVFGRKRIHCLKAHLGNIHKDHHCLYHYQCQHGAHCFPSEDKAYICANISMSTHSSHKRTASSEKDDHWRQIAGFHLALRKDDGQCYKEILNLPSISFSNISHLYPLMNQILSVVMDKQNYSFNCLLDSLSKQSRGFLKEVLLKVIEIDFNWTDVLDLLKGLSLMTIHKKALNKIRSRNYTNFSIITDLMELSVITETIVGKYYSRSDLMANRLDVLLFITQMFVGFNIPAPFIYRLVDLKIIDLRVEDLLEELQRNEAILDILTNGNFSYLHAIEVISSIATPNKEINVRDYGINDSLGPKCRYDRINLERVNELFKSSLIQGFNTDETIHLLISNFTSCNGIRDIIMSMKELEIPLRNITEYIISLYQDEATKEYQISLDNYELLSPVDKGFSFLRRLIRHLLQKEFITNSAMKKVLGTEIFKKYVRRVLPTNIYAKYKQRTSIDNFLKKHLNAIDSSIRGTGRTQSTPSIETEKQSTFLKSMKLFKKNKCKYEKENSRALKGTHFYETCRNGVWIKRSCPHSTEEEFDEEELKDTNESGKDEFKENEIEGSGESLSNMESLEDDEDEFIYQENSNTNTTKEQTDESEYSQENDSEGSRKTSSLNQDVIEDEDKSIITYTTLSTSPTETSEVRVESLPGSNTIDVKSKTKSGSPSLQNISSSTSFYLVNKLINEGAKASPSKYTSNRRCSNNGSRQVASGEAFNIFEICINNVWSRAHCPGISIFYTKIACCVHPFAFPCFDNCVIENP
Sbjct: 1 MNSKDFKQLFSLNKLETLLLLNLPWIFHIVSGSTEVLDPEERREQFHEILLPTFASEEGTRSPPMMIDSTTTMTTIYHWNRSLLIDPISRIHRTNFLKGNDTTTKELCRVFGRKRIHCLKAHLGNIHKDHHCLYHYQCQHGAHCFPSEDKAYICANISMSTHSSHKRTASSEKDDHWRQIAGFHLALRKDDGQCYKEILNLPSISFSNISHLYPLMNQILSVVMDKQNYSFNCLLDSLSKQSRGFLKEVLLKVIEIDFNWTDVLDLLKGLSLMTIHKKALNKIRSRNYTNFSIITDLMELSVITETIVGKYYSRSDLMANRLDVLLFITQMFVGFNIPAPFIYRLVDLKIIDLRVEDLLEELQRNEAILDILTNGNFSYLHAIEVISSIATPNKEINVRDYGINDSLGPKCRYDRINLERVNELFKSSLIQGFNTDETIHLLISNFTSCNGIRDIIMSMKELEIPLRNITEYIISLYQDEATKEYQISLDNYELLSPVDKGFSFLRRLIRHLLQKEFITNSAMKKVLGTEIFKKYVRRVLPTNIYAKYKQRTSIDNFLKKHLNAIDSSIRGTGRTQSTPSIETEKQSTFLKSMKLFKKNKCKYEKENSRALKGTHFYETCRNGVWIKRSCPHSTEEEFDEEELKDTNESGKDEFKENEIEGSGESLSNMESLEDDEDEFIYQENSNTNTTKEQTDESEYSQENDSEGSRKTSSLNQDVIEDEDKSIITYTTLSTSPTETSEVRVESLPGSNTIDVKSKTKSGSPSLQNISSSTSFYLVNKLINEGAKASPSKYTSNRRCSNNGSRQVASGEAFNIFEICINNVWSRAHCPGISIFYTKIACCVHPFAFPCFDNCVIENP 859 The following BLAST results are available for this feature:
BLAST of EMLSAG00000009352 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000009352 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 8
BLAST of EMLSAG00000009352 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000009352 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000009352 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000009352 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000009352 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s598:376462..453794+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000009352-692118 ID=EMLSAG00000009352-692118|Name=EMLSAG00000009352|organism=Lepeophtheirus salmonis|type=gene|length=77333bp|location=Sequence derived from alignment at LSalAtl2s598:376462..453794+ (Lepeophtheirus salmonis)back to top Add to Basket
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