EMLSAG00000009395, EMLSAG00000009395-692161 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000009395 vs. C. finmarchicus
Match: gi|592951059|gb|GAXK01007494.1| (TSA: Calanus finmarchicus comp658124_c1_seq1 transcribed RNA sequence) HSP 1 Score: 38.5058 bits (88), Expect = 5.452e-2 Identity = 28/95 (29.47%), Postives = 39/95 (41.05%), Query Frame = 0 Query: 347 YEINFHDMVARIIYDNINFKHVTVYQSGGFIIRNTS-LRTEGYTTSGIFGKRYITTDHCVAEVNSTHSFVAGG-FSSGEPNRKAWIYAWWEDTWT 439 + IN D+ I DN +Y +I N S + I+G Y C +VN+TH+ V+GG S G W Y W E W+ Sbjct: 411 FSINVPDVGWWIFRDNCGANCNEIYS---YIYSNNSWMDGPLLPDKTIYGYPYTPYQFCGTQVNATHTMVSGGKISGGTSISDVWFYDWSEQRWS 686
BLAST of EMLSAG00000009395 vs. C. finmarchicus
Match: gi|592905656|gb|GAXK01052719.1| (TSA: Calanus finmarchicus comp2121753_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 1.756e-1 Identity = 37/146 (25.34%), Postives = 59/146 (40.41%), Query Frame = 0 Query: 293 LKEPLPIRRHTDAV----AGLINDTLIICDSGVVSFRFQGRGMSGECFRLQVNSSIDDYEINFHDMVARIIYDNINFKHVTVYQSGGFIIRNTSLRTEGYTTSGIFGK-------RYITTDHCVAEVNSTHSFVAGGFSSGEPNRK 427 + +P P T AV G+IN ++ +C G + ECF L N+ ++ + R I + + GG R+ ++T G + I G+ Y HC +NSTH FV GG + EP ++ Sbjct: 186 VAKPFPYPYQTTAVYGLVGGVINTSITLCGG-----ADHGGNVFSECFFLSSNT--QNWNKFPGLLKPRGFATAITVLNDCLLVIGG---RSDGMKTLGTSEMNINGRWKMGPSLPYPVEQHCSVAINSTHFFVIGGLGNVEPIKR 593
BLAST of EMLSAG00000009395 vs. C. finmarchicus
Match: gi|592874623|gb|GAXK01082939.1| (TSA: Calanus finmarchicus comp2007790_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 3.728e-1 Identity = 19/63 (30.16%), Postives = 37/63 (58.73%), Query Frame = 0 Query: 403 HCVAEVNSTHSFVAGGFSSGEPNRKAWIYAWWEDTWTELTPMPSAVPFPRCSKYTKKGDILIA 465 HC+ + NS+H+F AGG+S +A+ Y ++ + L+ M + C++Y +G+I++A Sbjct: 322 HCMLQFNSSHTFFAGGYSDAGSYSEAYFY--YDGIFHPLSEMLTPRSHHMCARY--RGEIILA 498
BLAST of EMLSAG00000009395 vs. C. finmarchicus
Match: gi|592780133|gb|GAXK01174435.1| (TSA: Calanus finmarchicus comp6745350_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 4.127e-1 Identity = 29/114 (25.44%), Postives = 55/114 (48.25%), Query Frame = 0 Query: 399 ITTDHCVAEVNSTHSFVAGGFSSGEPNRKAWIYAWWEDTWTELTPMPSAVPFPRCSKYTKKGDILIATLERAMTFNVSTYKWL---EVGRPGRLHTDGELIFGGEDVGTYLIGG 509 + HC A++ S+ F++GG S E + ++IY + W E++PMP C+++ G I + ++ ++ W+ ++ L T ++I E + YLIGG Sbjct: 137 VVNSHCQAKLGSS-VFISGGHSIAESSNASFIYE--ANAWREVSPMPKGRADHACTEFA--GRIYVIAGTEVEIYDPASDSWMLGPQIPTSASL-TQAQVINHQETL--YLIGG 454
BLAST of EMLSAG00000009395 vs. C. finmarchicus
Match: gi|592811728|gb|GAXK01142840.1| (TSA: Calanus finmarchicus comp1206808_c0_seq3 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 4.270e-1 Identity = 24/76 (31.58%), Postives = 35/76 (46.05%), Query Frame = 0 Query: 414 FVAGGFSSGEPNRKAWIYAWWEDTWTELTPMPSAVPFPRCSKYTKKGDILIAT--LERA--MTFNVSTYKWLEVGR 485 VAGG+ + P + D WT TP+P AV R + G+I+ T RA + ++V W EVG+ Sbjct: 37 LVAGGYGADNPLSSTELMVEGSDAWTMSTPLPRAV---RGVRGATLGNIVYMTGGSRRAEILAWSVEGKDWEEVGK 255
BLAST of EMLSAG00000009395 vs. L. salmonis peptides
Match: EMLSAP00000009395 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5:30197:50078:-1 gene:EMLSAG00000009395 transcript:EMLSAT00000009395 description:"maker-LSalAtl2s5-snap-gene-0.5") HSP 1 Score: 1159.05 bits (2997), Expect = 0.000e+0 Identity = 555/555 (100.00%), Postives = 555/555 (100.00%), Query Frame = 0 Query: 1 MFDSLVGTSVFLNMSRSAKDSCKFLYKYLPTLLLLTIRPTACVHRDTVKLLKVVEWNDKEELDLEKEYLSLEKHNVFRAGTPVREWLNDVNKEMANFSQVVHVLEILETESYSIEDMVFLGTQVDLTPGIWEKNHSRDDGIKNLLYSACSVYDNNDDCFHLLYFMAKSNVKRLGLLNHIAKLSTKLSGLKLLLTIYNKESKRAYGMDRDLFKDISHKFEACNFCGFYYMDHDKQKFLKDYVRMMRIPSLFEETEECYKKCHIGEYPVIMVIHKDRAYLTSQDRIKCNHAFMKLKEPLPIRRHTDAVAGLINDTLIICDSGVVSFRFQGRGMSGECFRLQVNSSIDDYEINFHDMVARIIYDNINFKHVTVYQSGGFIIRNTSLRTEGYTTSGIFGKRYITTDHCVAEVNSTHSFVAGGFSSGEPNRKAWIYAWWEDTWTELTPMPSAVPFPRCSKYTKKGDILIATLERAMTFNVSTYKWLEVGRPGRLHTDGELIFGGEDVGTYLIGGRRTYKFTGEMWIELHGWXNNLNANPILASIPIHPNSRLIPRCFPTI 555 MFDSLVGTSVFLNMSRSAKDSCKFLYKYLPTLLLLTIRPTACVHRDTVKLLKVVEWNDKEELDLEKEYLSLEKHNVFRAGTPVREWLNDVNKEMANFSQVVHVLEILETESYSIEDMVFLGTQVDLTPGIWEKNHSRDDGIKNLLYSACSVYDNNDDCFHLLYFMAKSNVKRLGLLNHIAKLSTKLSGLKLLLTIYNKESKRAYGMDRDLFKDISHKFEACNFCGFYYMDHDKQKFLKDYVRMMRIPSLFEETEECYKKCHIGEYPVIMVIHKDRAYLTSQDRIKCNHAFMKLKEPLPIRRHTDAVAGLINDTLIICDSGVVSFRFQGRGMSGECFRLQVNSSIDDYEINFHDMVARIIYDNINFKHVTVYQSGGFIIRNTSLRTEGYTTSGIFGKRYITTDHCVAEVNSTHSFVAGGFSSGEPNRKAWIYAWWEDTWTELTPMPSAVPFPRCSKYTKKGDILIATLERAMTFNVSTYKWLEVGRPGRLHTDGELIFGGEDVGTYLIGGRRTYKFTGEMWIELHGWXNNLNANPILASIPIHPNSRLIPRCFPTI Sbjct: 1 MFDSLVGTSVFLNMSRSAKDSCKFLYKYLPTLLLLTIRPTACVHRDTVKLLKVVEWNDKEELDLEKEYLSLEKHNVFRAGTPVREWLNDVNKEMANFSQVVHVLEILETESYSIEDMVFLGTQVDLTPGIWEKNHSRDDGIKNLLYSACSVYDNNDDCFHLLYFMAKSNVKRLGLLNHIAKLSTKLSGLKLLLTIYNKESKRAYGMDRDLFKDISHKFEACNFCGFYYMDHDKQKFLKDYVRMMRIPSLFEETEECYKKCHIGEYPVIMVIHKDRAYLTSQDRIKCNHAFMKLKEPLPIRRHTDAVAGLINDTLIICDSGVVSFRFQGRGMSGECFRLQVNSSIDDYEINFHDMVARIIYDNINFKHVTVYQSGGFIIRNTSLRTEGYTTSGIFGKRYITTDHCVAEVNSTHSFVAGGFSSGEPNRKAWIYAWWEDTWTELTPMPSAVPFPRCSKYTKKGDILIATLERAMTFNVSTYKWLEVGRPGRLHTDGELIFGGEDVGTYLIGGRRTYKFTGEMWIELHGWXNNLNANPILASIPIHPNSRLIPRCFPTI 555
BLAST of EMLSAG00000009395 vs. L. salmonis peptides
Match: EMLSAP00000011698 (pep:novel supercontig:LSalAtl2s:LSalAtl2s812:214158:217695:1 gene:EMLSAG00000011698 transcript:EMLSAT00000011698 description:"maker-LSalAtl2s812-snap-gene-1.100") HSP 1 Score: 95.5153 bits (236), Expect = 5.310e-21 Identity = 98/469 (20.90%), Postives = 177/469 (37.74%), Query Frame = 0 Query: 116 DMVFLGTQVDLTPGIWEKNHSR--DDGIKNLLYSACSVYDNNDDCFHLLYFMAKSNVKRLGLLNHIAKLSTKLSG--LKLLLTIYNKESKRAYGMDRDLFKDISHKFEACNFC--------------------GFYYMDHDKQKFLKDYVRMMRIPSLFEETEECYKKCHIGEYPVIMVIHKDRAYLTSQDRIKCNHAFMKLKEPLPIRRHTDAVAGLINDTLIICDSGVVSFRFQGRGM---SGECFRLQVNSSIDDYEINFHDMVARIIYDNINFKHVTVYQSGGFIIRNTSLRTEGYTTSGIFGKRYITTDHCVAEVNSTHSFVAGGF-SSGEPNRKAWIYAWWEDTWTELTPMPSAVPFPRCSKYTKKGDILIATLERAMTFNVSTYKWLEVGRPGRLHTDGELIFGGE----DVGTYLIGG--------RRTYKFTGE--MWIELHGWXNNLNANPILASIPIH 542 D FLG+QVDLT + S+ D ++ + S+ + + D C L Y S + R+ +N + + G LK L + N + Y + DLF + +F C G + +++ F+K ++ P E+ +CY KC + P+++++ ++ S + + ++ AV G+ + + G G+ GE + N FK +YQ+G + +L Y+ HC+ +N + +F+AGG+ + + KAW Y W +W +L PMP CS +GD+L++ ++ +N +T W+ + G L + FGG + G L GG ++F+ WI+ G N + S+P+H Sbjct: 136 DYTFLGSQVDLTSALSRPRRSKRIDTTLRKICSSSSANQETIDACLSLSYIQGMSTLLRVHAINLLKSSTRSNDGKFLKALDNLLNSSLNKLYHENEDLFSSLFKEFNTFTSCTIICPLYERGTPKWNKASLDGSSLITKEQRLFMKMFLSSFLDPE--EQLSQCYNKC-VAASPLVLLLEEENGESVSSSDECVSSRITYPGNFILDTKYDQAVGGITIPVPFVTSKSAFTVIGDGTGLWVTGGERYGPGANP----------------------FKTTHIYQNGNWKA-GPNLPIALYS-------------HCLVHINESFTFLAGGYMNEKQEVDKAWAYDWTSHSWRDLPPMPHPTNKTLCSIMNDEGDVLLSGIDHGFIYNSTTNTWIHLPPGGALPMESR--FGGSMAYAEGGVRLFGGSFDPRGSSNYVFRFSESDLKWIQRDGSLMKDRKNVLAISVPLH 563
BLAST of EMLSAG00000009395 vs. L. salmonis peptides
Match: EMLSAP00000001599 (pep:novel supercontig:LSalAtl2s:LSalAtl2s127:34427:36005:1 gene:EMLSAG00000001599 transcript:EMLSAT00000001599 description:"maker-LSalAtl2s127-snap-gene-0.15") HSP 1 Score: 51.6026 bits (122), Expect = 5.207e-8 Identity = 34/97 (35.05%), Postives = 45/97 (46.39%), Query Frame = 0 Query: 436 DTWTELTPMPSAVPFPRCSKYTKKGDILIATLERAMTFNVSTYKWLEVGRPGRLHTDGELIFGGEDV--GTYLIGGR---------RTYKFTGEMWI 521 D W+E MP + FP+CS +K D+LIA R TF + +W E G G L +L + G YL GG+ + YKF G WI Sbjct: 14 DKWSEANNMPEPIRFPKCSMKNEKNDLLIAGKYRGDTFRMKDMRWTEYGI-GELPATSQLFATMVYLKGGPYLYGGQHQISQEKTNKIYKFIGTSWI 109 The following BLAST results are available for this feature:
BLAST of EMLSAG00000009395 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000009395 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000009395 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000009395 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000009395 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000009395 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000009395 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s5:30197..50078- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000009395-692161 ID=EMLSAG00000009395-692161|Name=EMLSAG00000009395|organism=Lepeophtheirus salmonis|type=gene|length=19882bp|location=Sequence derived from alignment at LSalAtl2s5:30197..50078- (Lepeophtheirus salmonis)back to top Add to Basket
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