EMLSAG00000009399, EMLSAG00000009399-692165 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009399
Unique NameEMLSAG00000009399-692165
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592814813|gb|GAXK01139755.1| (TSA: Calanus finmarchicus comp529044_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 1.729e-2
Identity = 21/53 (39.62%), Postives = 35/53 (66.04%), Query Frame = 0
Query:    4 WLIFNVLFIIGLYXXXXXXXXLXHPLINKLWGLIPAVVGFIYIYFWVKVWELY 56
            WL+F++L +I L++   ++FV+   L  KL G+IP +V    +Y W KV+EL+
Sbjct:  431 WLLFHLLVLIILFITSIILFVVQISLW-KLVGIIPVMVAIFSMYCWAKVYELF 586          
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592814814|gb|GAXK01139754.1| (TSA: Calanus finmarchicus comp529044_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 4.491e-2
Identity = 19/56 (33.93%), Postives = 35/56 (62.50%), Query Frame = 0
Query:    1 MLPWLIFNVLFIIGLYXXXXXXXXLXHPLINKLWGLIPAVVGFIYIYFWVKVWELY 56
            ++ WLI + L ++ L++   ++F++   L  KL G+IP +V    +Y W KV+EL+
Sbjct:  431 LMHWLILHFLSLVFLFITSILLFIVQISLW-KLVGIIPVMVAIFSMYCWAKVYELF 595          
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592841946|gb|GAXK01115598.1| (TSA: Calanus finmarchicus comp3605434_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 8.786e-2
Identity = 17/60 (28.33%), Postives = 35/60 (58.33%), Query Frame = 0
Query:    1 MLPWLIFNVLFIIGLYXXXXXXXXLXHPLINK------LWGLIPAVVGFIYIYFWVKVWE 54
            +LPWL+F++L I  + +    + +L H +INK          +P + G ++++ W+KV++
Sbjct:  203 ILPWLVFHLLVI--MIMVIGGMALLLHFIINKKEFKRAAMCSLPLITGIMFMFIWMKVYQ 376          
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592782694|gb|GAXK01171874.1| (TSA: Calanus finmarchicus comp62957_c0_seq88 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 6.488e-1
Identity = 15/55 (27.27%), Postives = 24/55 (43.64%), Query Frame = 0
Query:   33 LWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQNLAMVEQMYNSNKQVNYSQRAG 87
            L  ++P +V         K  EL  KWKNS  ++ + V   Y+   QV+    + 
Sbjct:  240 LTPIVPCLVILKVSTIMAKKEELVEKWKNSCPESASTVATAYDDEIQVSMKTDSS 404          
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592782702|gb|GAXK01171866.1| (TSA: Calanus finmarchicus comp62957_c0_seq80 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 6.776e-1
Identity = 15/55 (27.27%), Postives = 24/55 (43.64%), Query Frame = 0
Query:   33 LWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQNLAMVEQMYNSNKQVNYSQRAG 87
            L  ++P +V         K  EL  KWKNS  ++ + V   Y+   QV+    + 
Sbjct:  367 LTPIVPCLVILKVSTIMAKKEELVEKWKNSCPESASTVATAYDDEIQVSMKTDSS 531          
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592782701|gb|GAXK01171867.1| (TSA: Calanus finmarchicus comp62957_c0_seq81 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 6.815e-1
Identity = 15/55 (27.27%), Postives = 24/55 (43.64%), Query Frame = 0
Query:   33 LWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQNLAMVEQMYNSNKQVNYSQRAG 87
            L  ++P +V         K  EL  KWKNS  ++ + V   Y+   QV+    + 
Sbjct:  355 LTPIVPCLVILKVSTIMAKKEELVEKWKNSCPESASTVATAYDDEIQVSMKTDSS 519          
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592848769|gb|GAXK01108775.1| (TSA: Calanus finmarchicus comp296585_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 7.957e-1
Identity = 16/51 (31.37%), Postives = 26/51 (50.98%), Query Frame = 0
Query:   46 IYFWV-KVWELYR----KWKNSIKQNLAMVEQMYNSNKQVNYSQRAGGTSW 91
            IY W+  ++  Y     KWKNSI+ NL++  +     K    +Q++ G  W
Sbjct:  406 IYNWICTLYPFYSVTDDKWKNSIRHNLSLYPEFVKGEK----TQQSAGHLW 546          
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592846637|gb|GAXK01110907.1| (TSA: Calanus finmarchicus comp331293_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 9.074e-1
Identity = 17/68 (25.00%), Postives = 36/68 (52.94%), Query Frame = 0
Query:    1 MLPWLIFNVLFII-----GLYXXXXXXXXLXHPLIN-KLWGLIPAVVGFIYIYFWVKVWELYRKWKNS 62
            +LPWL+++V+ I+     G+Y+    + ++    ++  +    P + G   I+ WV V +LY + K +
Sbjct:  204 LLPWLVWHVVMILGCIGSGVYLVIYFLVLVEERAVDMAVVSAGPVLAGIFLIFLWVLVDQLYIQLKQT 407          
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592837834|gb|GAXK01119710.1| (TSA: Calanus finmarchicus comp3038390_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.236e+0
Identity = 20/71 (28.17%), Postives = 37/71 (52.11%), Query Frame = 0
Query:    1 MLPWLIFNVLFIIGLYXXXXXXXXLXHPLINK------LWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQ 65
            ++PWL F++L    + +  + +  + H  INK         LIP + G ++++ W+KV+   +K K   KQ
Sbjct:  629 IIPWLAFHLL--AAILMILSGIAFVLHFTINKKQFMRAALCLIPILTGLMFLFIWMKVYREMQKTKFKEKQ 835          
BLAST of EMLSAG00000009399 vs. C. finmarchicus
Match: gi|592895102|gb|GAXK01063273.1| (TSA: Calanus finmarchicus comp809067_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 2.288e+0
Identity = 19/68 (27.94%), Postives = 36/68 (52.94%), Query Frame = 0
Query:    1 MLPWLIFNVLFIIG-LYXXXXXXXXLXHPLINKLWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQNL 67
            +LPWLI     I+  L +   ++ +L +     +  L+   V  I I FW  +++LYR+ K S ++++
Sbjct:  432 LLPWLIVYFTSIVSTLSLLVYILVILQNIWFRVILFLLVIPVEVIAISFWSAIFKLYRRIKTSQRKHI 635          
BLAST of EMLSAG00000009399 vs. L. salmonis peptides
Match: EMLSAP00000009399 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5:507237:507909:1 gene:EMLSAG00000009399 transcript:EMLSAT00000009399 description:"maker-LSalAtl2s5-augustus-gene-5.10")

HSP 1 Score: 177.178 bits (448), Expect = 1.400e-58
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
Query:    1 MLPWLIFNVLFIIGLYVAXAVVFVLXHPLINKLWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQNLAMVEQMYNSNKQVNYSQRAGGTSW 91
            MLPWLIFNVLFIIGLYVAXAVVFVLXHPLINKLWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQNLAMVEQMYNSNKQVNYSQRAGGTSW
Sbjct:    1 MLPWLIFNVLFIIGLYVAXAVVFVLXHPLINKLWGLIPAVVGFIYIYFWVKVWELYRKWKNSIKQNLAMVEQMYNSNKQVNYSQRAGGTSW 91          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009399 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009399 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 10
Match NameE-valueIdentityDescription
gi|592814813|gb|GAXK01139755.1|1.729e-239.62TSA: Calanus finmarchicus comp529044_c1_seq3 trans... [more]
gi|592814814|gb|GAXK01139754.1|4.491e-233.93TSA: Calanus finmarchicus comp529044_c1_seq2 trans... [more]
gi|592841946|gb|GAXK01115598.1|8.786e-228.33TSA: Calanus finmarchicus comp3605434_c0_seq1 tran... [more]
gi|592782694|gb|GAXK01171874.1|6.488e-127.27TSA: Calanus finmarchicus comp62957_c0_seq88 trans... [more]
gi|592782702|gb|GAXK01171866.1|6.776e-127.27TSA: Calanus finmarchicus comp62957_c0_seq80 trans... [more]
gi|592782701|gb|GAXK01171867.1|6.815e-127.27TSA: Calanus finmarchicus comp62957_c0_seq81 trans... [more]
gi|592848769|gb|GAXK01108775.1|7.957e-131.37TSA: Calanus finmarchicus comp296585_c0_seq1 trans... [more]
gi|592846637|gb|GAXK01110907.1|9.074e-125.00TSA: Calanus finmarchicus comp331293_c0_seq1 trans... [more]
gi|592837834|gb|GAXK01119710.1|1.236e+028.17TSA: Calanus finmarchicus comp3038390_c0_seq1 tran... [more]
gi|592895102|gb|GAXK01063273.1|2.288e+027.94TSA: Calanus finmarchicus comp809067_c0_seq1 trans... [more]
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BLAST of EMLSAG00000009399 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000093991.400e-58100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s5:507237:... [more]
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BLAST of EMLSAG00000009399 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009399 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009399 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009399 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s5supercontigLSalAtl2s5:507237..507909 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s5-augustus-gene-5.10
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009399 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009399EMLSAT00000009399-705246Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s5:507237..507909+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009399-692165 ID=EMLSAG00000009399-692165|Name=EMLSAG00000009399|organism=Lepeophtheirus salmonis|type=gene|length=673bp|location=Sequence derived from alignment at LSalAtl2s5:507237..507909+ (Lepeophtheirus salmonis)
TWTGGAKTATCCAATAGCTCGAGTTCATTCATGCTTCCATGGTTGATTTT CAACGTTCTTTTCATTATCGGACTCTACGTTGCTSCCGCCGTTGTATTTG TTCTTSCTCATCCACTCATCAATAAACTTTGGGGCCTCATYCCTGCCGTT GTTGGATTCATATATATTTATTTTTGGGTTAAGGTAACTTTTTTAGTTTC ATTTATTCTTTTATTAATAAATCTATTCAATTTGAAGGTATGGGAACTTT ATCGTAAGTGGAAAAACAGCATAAAACAGAATTTGGCTATGGTTGAACAG ATGTATAATAGCAATAAACAAGTCAATTATTCTCAACGAGCTGGAGGAAC ATCCTGGTGATGATGAAGAAGTAGGGGGTAGTAACAAGTAAAATCAGTGA AGTTGTCAATTTCTCAAATGAATAACGAAGTTGCGTGAATCTATGTATAT CTAAAGACTTGAGTTTTGTATTTAATTTGGAAAGTGCGTTCCTAATGAGT TTTTTTTTCTAATATATATGCAAAGTATAGTGTTTTTTATTTCATATTTA ATTATTACTTGCAAGAAATAAAGAAAGCAAGTGCCATTGGAATTAGATAC AATAATTATTTCATAATTTTTTAAAATCTTCACATGTATAAAACTATAAT TTTTTTAAAATTCTATAGAATGA
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