EMLSAG00000009644, EMLSAG00000009644-692410 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009644
Unique NameEMLSAG00000009644-692410
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000009644 vs. GO
Match: - (symbol:Afu2g15680 species:746128 "Aspergillus fumigatus" [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0001129 "TBP-class protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly" evidence=IEA] [GO:0005672 "transcription factor TFIIA complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0051123 "RNA polymerase II transcriptional preinitiation complex assembly" evidence=IEA] InterPro:IPR003194 InterPro:IPR009083 InterPro:IPR009088 InterPro:IPR015871 InterPro:IPR015872 Pfam:PF02268 Pfam:PF02751 PIRSF:PIRSF009415 ProDom:PD009224 GO:GO:0006355 EMBL:AAHF01000001 GO:GO:0003743 GO:GO:0006367 HOGENOM:HOG000167251 KO:K03123 OMA:WTFIVKN GO:GO:0005672 Gene3D:1.10.287.190 Gene3D:2.30.18.10 PANTHER:PTHR10966 SUPFAM:SSF47396 SUPFAM:SSF50784 OrthoDB:EOG7K6Q74 RefSeq:XP_755903.1 ProteinModelPortal:Q4WZV0 SMR:Q4WZV0 STRING:5085.CADAFUAP00004268 EnsemblFungi:CADAFUAT00004268 GeneID:3512735 KEGG:afm:AFUA_2G15680 Uniprot:Q4WZV0)

HSP 1 Score: 44.2838 bits (103), Expect = 6.505e-6
Identity = 31/100 (31.00%), Postives = 46/100 (46.00%), Query Frame = 0 
Query:    3 YQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNKR------------------EVSEF--------------AKVDRVKIVACDAK 68
            Y+LYR ++LG +L +TLD+L+    + P LA+K+L  FDR I   L  +                  EV  F                 D+VKIV+C++K
Sbjct:    7 YELYRGSSLGLSLTDTLDDLINEGRIEPQLAMKILSTFDRVITEVLADKVRARLTFKGHLDTYRFCDEVWTFLIKDVTFKLDNQATVTADKVKIVSCNSK 106
[Close]
BLAST of EMLSAG00000009644 vs. GO
Match: - (symbol:AN2181 species:162425 "Aspergillus nidulans" [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0001129 "TBP-class protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly" evidence=IEA] [GO:0005672 "transcription factor TFIIA complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0051123 "RNA polymerase II transcriptional preinitiation complex assembly" evidence=IEA] InterPro:IPR003194 InterPro:IPR009083 InterPro:IPR009088 InterPro:IPR015871 InterPro:IPR015872 Pfam:PF02268 Pfam:PF02751 PIRSF:PIRSF009415 ProDom:PD009224 GO:GO:0006355 EMBL:BN001307 GO:GO:0006367 EMBL:AACD01000034 eggNOG:COG5123 HOGENOM:HOG000167251 KO:K03123 OMA:WTFIVKN GO:GO:0005672 Gene3D:1.10.287.190 Gene3D:2.30.18.10 PANTHER:PTHR10966 SUPFAM:SSF47396 SUPFAM:SSF50784 RefSeq:XP_659785.1 ProteinModelPortal:Q5BB99 SMR:Q5BB99 STRING:162425.CADANIAP00008864 EnsemblFungi:CADANIAT00008864 GeneID:2875421 KEGG:ani:AN2181.2 OrthoDB:EOG7K6Q74 Uniprot:Q5BB99)

HSP 1 Score: 43.8986 bits (102), Expect = 9.647e-6
Identity = 31/100 (31.00%), Postives = 46/100 (46.00%), Query Frame = 0 
Query:    3 YQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNKR------------------EVSEF--------------AKVDRVKIVACDAK 68
            Y+LYR ++LG +L +TLD+L+    + P LA+K+L  FDR I   L  +                  EV  F                 D+VKIV+C++K
Sbjct:    7 YELYRGSSLGLSLTDTLDDLINEGRIEPQLAMKILSTFDRVITEVLADKVRTRLTFKGHLDTYRFCDEVWTFLIKDVNFKLDNQQTISADKVKIVSCNSK 106
[Close]
BLAST of EMLSAG00000009644 vs. GO
Match: - (symbol:TOA2 species:5476 "Candida albicans" [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0001129 "TBP-class protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly" evidence=IEA] [GO:0005672 "transcription factor TFIIA complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0051123 "RNA polymerase II transcriptional preinitiation complex assembly" evidence=IEA] InterPro:IPR003194 InterPro:IPR009083 InterPro:IPR009088 InterPro:IPR015871 InterPro:IPR015872 Pfam:PF02268 Pfam:PF02751 PIRSF:PIRSF009415 ProDom:PD009224 CGD:CAL0003642 GO:GO:0006355 EMBL:AACQ01000005 EMBL:AACQ01000006 GO:GO:0006367 eggNOG:COG5123 KO:K03123 GO:GO:0005672 Gene3D:1.10.287.190 Gene3D:2.30.18.10 PANTHER:PTHR10966 SUPFAM:SSF47396 SUPFAM:SSF50784 OrthoDB:EOG7K6Q74 RefSeq:XP_722697.1 RefSeq:XP_722843.1 ProteinModelPortal:Q5AMM1 SMR:Q5AMM1 STRING:5476.CAL0003642 GeneID:3635564 GeneID:3635710 KEGG:cal:CaO19.12095 KEGG:cal:CaO19.4625 Uniprot:Q5AMM1)

HSP 1 Score: 41.5874 bits (96), Expect = 7.390e-5
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 0 
Query:    3 YQLYRNTTLGHTLQETLDELM--QMLSPALALKVLLQFDRSI 42
            Y+LYR +T+G TL + LD L+  + + P LA ++L+ FDR I
Sbjct:    7 YELYRRSTIGVTLMDALDTLISDEKIQPQLANRILINFDRII 48
[Close]
BLAST of EMLSAG00000009644 vs. GO
Match: - (symbol:CPAR2_402630 species:5480 "Candida parapsilosis" [GO:0005672 "transcription factor TFIIA complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0001129 "TBP-class protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA polymerase II transcriptional preinitiation complex assembly" evidence=IEA] InterPro:IPR003194 InterPro:IPR009083 InterPro:IPR009088 InterPro:IPR015871 InterPro:IPR015872 Pfam:PF02268 Pfam:PF02751 PIRSF:PIRSF009415 ProDom:PD009224 GO:GO:0006355 GO:GO:0006367 GO:GO:0005672 Gene3D:1.10.287.190 Gene3D:2.30.18.10 PANTHER:PTHR10966 SUPFAM:SSF47396 SUPFAM:SSF50784 OrthoDB:EOG7K6Q74 EMBL:HE605208 Uniprot:G8BIJ7)

HSP 1 Score: 39.2762 bits (90), Expect = 5.410e-4
Identity = 24/56 (42.86%), Postives = 34/56 (60.71%), Query Frame = 0 
Query:    3 YQLYRNTTLGHTLQETLDELM--QMLSPALALKVLLQFDRSINNALNKREVSEFAK 56
            Y+LYR +T+G TL + LD L+  + + P LA ++L  FDR I  A N +  S  AK
Sbjct:    7 YELYRRSTIGVTLADALDTLISDEKIQPQLANRILNNFDRII--AENLKNESNIAK 60
[Close]
BLAST of EMLSAG00000009644 vs. C. finmarchicus
Match: gi|592784924|gb|GAXK01169644.1| (TSA: Calanus finmarchicus comp26_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 108.612 bits (270), Expect = 1.429e-28
Identity = 61/106 (57.55%), Postives = 68/106 (64.15%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELM--QMLSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAKSALP 72
            M+YQLYRNTTLGHTLQE+LDELM  QMLSPALAL+VL+QFD+SINNAL                                  RE SE AKVDRVKIVACDAKS++P
Sbjct:  338 MSYQLYRNTTLGHTLQESLDELMQLQMLSPALALRVLIQFDKSINNALATRVKTKLHFKAEKLNTYRFCDNVWTFMLKEVEFRENSELAKVDRVKIVACDAKSSVP 655
[Close]
BLAST of EMLSAG00000009644 vs. C. finmarchicus
Match: gi|592832708|gb|GAXK01124836.1| (TSA: Calanus finmarchicus comp25313_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 9.461e-5
Identity = 35/105 (33.33%), Postives = 47/105 (44.76%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDEL--MQMLSPALALKVLLQFDRSINNALNKREVS--------------------------EF--------AKVD-RVKIVACDAK 68
            MAY LYR T LG  LQE L EL   + +SP++   VL +FD ++ + L     S                          EF        A+V+ +VKIVACDA+
Sbjct:   18 MAYALYRGTRLGLALQEALGELEEYEQISPSVKSAVLRKFDETMCDKLENEVESRLTIRAERLWSFRFCDSVWQLLLKNVEFLSNTGHLVARVEGKVKIVACDAR 332
[Close]
BLAST of EMLSAG00000009644 vs. L. salmonis peptides
Match: EMLSAP00000009644 (pep:novel supercontig:LSalAtl2s:LSalAtl2s61:239549:239882:-1 gene:EMLSAG00000009644 transcript:EMLSAT00000009644 description:"snap_masked-LSalAtl2s61-processed-gene-2.20")

HSP 1 Score: 171.014 bits (432), Expect = 2.172e-56
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQMLSPALALKVLLQFDRSINNALNKREVSEFAKVDRVKIVACDAKSALPIVSTTKSYLND 83
            MAYQLYRNTTLGHTLQETLDELMQMLSPALALKVLLQFDRSINNALNKREVSEFAKVDRVKIVACDAKSALPIVSTTKSYLND
Sbjct:    1 MAYQLYRNTTLGHTLQETLDELMQMLSPALALKVLLQFDRSINNALNKREVSEFAKVDRVKIVACDAKSALPIVSTTKSYLND 83
[Close]
BLAST of EMLSAG00000009644 vs. L. salmonis peptides
Match: EMLSAP00000000101 (pep:novel supercontig:LSalAtl2s:LSalAtl2s101:131115:131450:-1 gene:EMLSAG00000000101 transcript:EMLSAT00000000101 description:"augustus_masked-LSalAtl2s101-processed-gene-1.1")

HSP 1 Score: 123.25 bits (308), Expect = 2.062e-37
Identity = 70/107 (65.42%), Postives = 71/107 (66.36%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDEL--MQMLSPALALKVLLQFDRSINNALNKR--------------------------------EVSEFAKVDRVKIVACDAKSALPI 73
            M+YQLYRNTTLGHTLQETLDEL  MQMLSPALALKVLLQFDRSINNALN R                                EVSE AKVDRVKIVACDAKSALPI
Sbjct:    1 MSYQLYRNTTLGHTLQETLDELMQMQMLSPALALKVLLQFDRSINNALNTRVKTRLNFKAEKLNTYRFCDNVWTFMLNEVEFKEVSELAKVDRVKIVACDAKSALPI 107
[Close]
BLAST of EMLSAG00000009644 vs. SwissProt
Match: gi|1711664|sp|P52656.1|T2AG_DROME (RecName: Full=Transcription initiation factor IIA subunit 2; AltName: Full=General transcription factor IIA subunit 2; AltName: Full=TFIIA p14 subunit; Short=TFIIA-14; AltName: Full=Transcription initiation factor IIA gamma chain; Short=TFIIA-gamma; AltName: Full=dTFIIA-S)

HSP 1 Score: 96.2857 bits (238), Expect = 1.398e-26
Identity = 53/104 (50.96%), Postives = 62/104 (59.62%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAKSA 70
            M+YQLYRNTTLG+TLQE+LDEL+Q   ++P LA KVLLQFD+SINNALN+                                REV E  KVD+VKIVACD KS 
Sbjct:    1 MSYQLYRNTTLGNTLQESLDELIQYGQITPGLAFKVLLQFDKSINNALNQRVKARVTFKAGKLNTYRFCDNVWTLMLNDVEFREVHEIVKVDKVKIVACDGKSG 104
[Close]
BLAST of EMLSAG00000009644 vs. SwissProt
Match: gi|2811071|sp|O08950.1|T2AG_RAT (RecName: Full=Transcription initiation factor IIA subunit 2; AltName: Full=General transcription factor IIA subunit 2; AltName: Full=Transcription initiation factor IIA gamma chain; Short=TFIIA-gamma >gi|47117190|sp|Q80ZM7.2|T2AG_MOUSE RecName: Full=Transcription initiation factor IIA subunit 2; AltName: Full=General transcription factor IIA subunit 2; AltName: Full=Transcription initiation factor IIA gamma chain; Short=TFIIA-gamma)

HSP 1 Score: 87.4261 bits (215), Expect = 5.242e-23
Identity = 49/102 (48.04%), Postives = 63/102 (61.76%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELM--QMLSPALALKVLLQFDRSINNALNK-------------------------------REVSEFAKVDRVKIVACDAKS 69
            MAYQLYRNTTLG++LQE+LDEL+  Q ++P LAL+VLLQFD++IN+AL +                               REV+E  KVD+VKIVACD K+
Sbjct:    1 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102
[Close]
BLAST of EMLSAG00000009644 vs. SwissProt
Match: gi|327488497|sp|B7Q1Q9.1|T2AG_IXOSC (RecName: Full=Transcription initiation factor IIA subunit 2; AltName: Full=General transcription factor IIA subunit 2; AltName: Full=Transcription initiation factor IIA gamma chain; Short=TFIIA-gamma)

HSP 1 Score: 87.0409 bits (214), Expect = 7.789e-23
Identity = 50/102 (49.02%), Postives = 59/102 (57.84%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAK 68
            M+YQLYRNTTLG+TLQE+LDEL+Q   ++P LALKVLLQFD++INNAL                                  REV E  K D+VKIVACD K
Sbjct:    1 MSYQLYRNTTLGNTLQESLDELIQCGQITPHLALKVLLQFDKAINNALANRVKTRLTFKAGHLSTYRFCDNVWTFVLKDVEFREVQELVKADKVKIVACDGK 102
[Close]
BLAST of EMLSAG00000009644 vs. SwissProt
Match: gi|20140818|sp|Q9IA78.1|T2AG_PAROL (RecName: Full=Transcription initiation factor IIA subunit 2; AltName: Full=General transcription factor IIA subunit 2; AltName: Full=Transcription initiation factor IIA gamma chain; Short=TFIIA-gamma)

HSP 1 Score: 86.6557 bits (213), Expect = 9.452e-23
Identity = 50/102 (49.02%), Postives = 63/102 (61.76%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELM--QMLSPALALKVLLQFDRSINNAL-----NK--------------------------REVSEFAKVDRVKIVACDAKS 69
            MAYQLYRNTTLG++LQE+LDEL+  Q ++P LAL+VLLQFD++IN AL     N+                          REV++  KVD+VKIVACD KS
Sbjct:    1 MAYQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALASRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGKS 102
[Close]
BLAST of EMLSAG00000009644 vs. SwissProt
Match: gi|1729806|sp|P52657.1|T2AG_HUMAN (RecName: Full=Transcription initiation factor IIA subunit 2; AltName: Full=General transcription factor IIA subunit 2; AltName: Full=TFIIA p12 subunit; Short=TFIIA-12; Short=TFIIAS; AltName: Full=Transcription initiation factor IIA gamma chain; Short=TFIIA-gamma)

HSP 1 Score: 86.2705 bits (212), Expect = 1.371e-22
Identity = 49/102 (48.04%), Postives = 62/102 (60.78%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELM--QMLSPALALKVLLQFDRSINNALNK-------------------------------REVSEFAKVDRVKIVACDAKS 69
            MAYQLYRNTTLG++LQE+LDEL+  Q ++P LAL+VLLQFD++IN AL +                               REV+E  KVD+VKIVACD K+
Sbjct:    1 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKN 102
[Close]
BLAST of EMLSAG00000009644 vs. SwissProt
Match: gi|20140636|sp|Q90YG6.1|T2AG_ONCMY (RecName: Full=Transcription initiation factor IIA subunit 2; AltName: Full=General transcription factor IIA subunit 2; AltName: Full=Transcription initiation factor IIA gamma chain; Short=TFIIA-gamma)

HSP 1 Score: 85.1149 bits (209), Expect = 3.606e-22
Identity = 48/102 (47.06%), Postives = 61/102 (59.80%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNKR-------------------------------EVSEFAKVDRVKIVACDAKS 69
            MAYQLYRNTTLG++LQE+LDEL+Q   ++P LAL+VLLQFD++IN AL  R                               EV++  KVD+VKIVACD K+
Sbjct:    1 MAYQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALANRVRNRVNFKGSLNTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGKN 102
[Close]
BLAST of EMLSAG00000009644 vs. SwissProt
Match: gi|74853880|sp|Q54ND1.1|T2AG_DICDI (RecName: Full=Transcription initiation factor IIA subunit 2; AltName: Full=General transcription factor IIA subunit 2; AltName: Full=Transcription initiation factor IIA gamma chain; Short=TFIIA-gamma)

HSP 1 Score: 61.6178 bits (148), Expect = 7.308e-13
Identity = 38/99 (38.38%), Postives = 51/99 (51.52%), Query Frame = 0 
Query:    3 YQLYRNTTLGHTLQETLDELM--QMLSPALALKVLLQFDRSINNALN--------------------------------KREVSEFAKVDRVKIVACDA 67
            Y+LYR +T+G  L +TL+EL+  Q +S +L  K+L QFD++IN AL+                                K E +E  KVDRVKIVACDA
Sbjct:    8 YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSLHTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDA 106
[Close]
BLAST of EMLSAG00000009644 vs. SwissProt
Match: gi|20140870|sp|Q9NEX2.2|T2AG_CAEEL (RecName: Full=Transcription initiation factor IIA subunit 2; AltName: Full=General transcription factor IIA subunit 2; AltName: Full=Transcription initiation factor IIA gamma chain; Short=TFIIA-gamma)

HSP 1 Score: 60.077 bits (144), Expect = 3.217e-12
Identity = 39/105 (37.14%), Postives = 52/105 (49.52%), Query Frame = 0 
Query:    3 YQLYRNTTLGHTLQETLDELM--QMLSPALALKVLLQFDRSINNAL-----NK---------------------------REVSEFAKVDRVKIVACDAKSALPI 73
            YQLYRNTTLG  LQ+TLD+ +  QM+  +L+ K++  FD+SIN  L     NK                           R+  E   VDR+KIVACD ++   I
Sbjct:    6 YQLYRNTTLGQALQKTLDDFVGDQMIPDSLSKKIMDSFDKSINKILPHKAKNKVNFRADKLRAYRYCDNVWTFIVEQIDLRDAVEGGTVDRLKIVACDGQTKGQI 110
[Close]
BLAST of EMLSAG00000009644 vs. SwissProt
Match: gi|20141796|sp|Q39236.2|T2AG_ARATH (RecName: Full=Transcription initiation factor IIA subunit 2; AltName: Full=General transcription factor IIA subunit 2; AltName: Full=Transcription initiation factor IIA gamma chain; Short=TFIIA-gamma)

HSP 1 Score: 56.9954 bits (136), Expect = 3.579e-11
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 0 
Query:    3 YQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALN---KREVS--------EFA--------------------KVDRVKIVACDAK 68
            ++LYR +T+G  L ETLDE++Q   LSP LA++VL+QFD+S+  AL    K +VS         F                      V RVKIVACD+K
Sbjct:    4 FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSK 102
[Close]
BLAST of EMLSAG00000009644 vs. SwissProt
Match: gi|122169632|sp|Q0DLD3.1|T2AG_ORYSJ (RecName: Full=Transcription initiation factor IIA subunit 2; AltName: Full=General transcription factor IIA subunit 2; AltName: Full=Transcription initiation factor IIA gamma chain; Short=TFIIA-gamma >gi|158513184|sp|A2XZI2.2|T2AG_ORYSI RecName: Full=Transcription initiation factor IIA subunit 2; AltName: Full=General transcription factor IIA subunit 2; AltName: Full=Transcription initiation factor IIA gamma chain; Short=TFIIA-gamma)

HSP 1 Score: 55.0694 bits (131), Expect = 1.917e-10
Identity = 34/99 (34.34%), Postives = 51/99 (51.52%), Query Frame = 0 
Query:    3 YQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNKREVSEFA-------------------------------KVDRVKIVACDAK 68
            ++LYR +T+G  L ETLDE++    LSP LA++VL+QFD+S+  AL  +  S+ +                               +V +VKIVACD+K
Sbjct:    4 FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSK 102
[Close]
BLAST of EMLSAG00000009644 vs. Select Arthropod Genomes
Match: AAF56199.1 (Transcription-factor-IIA-S [Drosophila melanogaster])

HSP 1 Score: 96.2857 bits (238), Expect = 6.776e-27
Identity = 53/104 (50.96%), Postives = 62/104 (59.62%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAKSA 70
            M+YQLYRNTTLG+TLQE+LDEL+Q   ++P LA KVLLQFD+SINNALN+                                REV E  KVD+VKIVACD KS 
Sbjct:    1 MSYQLYRNTTLGNTLQESLDELIQYGQITPGLAFKVLLQFDKSINNALNQRVKARVTFKAGKLNTYRFCDNVWTLMLNDVEFREVHEIVKVDKVKIVACDGKSG 104
[Close]
BLAST of EMLSAG00000009644 vs. Select Arthropod Genomes
Match: EAA09250.4 (AGAP004370-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 88.1965 bits (217), Expect = 1.431e-23
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAKS 69
            M YQLYRNTTLG+TLQE+LDEL+Q   ++P LA++VL+QFD+SIN AL+                                 REV EFA+VD+VKIVACD K+
Sbjct:    1 MTYQLYRNTTLGNTLQESLDELIQYGQITPQLAVRVLVQFDKSINAALSNRVKSRVTFKAAKLNTYRFCDNVWTLMLNDVEFREVHEFARVDKVKIVACDGKN 103
[Close]
BLAST of EMLSAG00000009644 vs. Select Arthropod Genomes
Match: gb|EEC12781.1| (transcription initiation factor IIA gamma chain, putative [Ixodes scapularis])

HSP 1 Score: 87.0409 bits (214), Expect = 3.775e-23
Identity = 50/102 (49.02%), Postives = 59/102 (57.84%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAK 68
            M+YQLYRNTTLG+TLQE+LDEL+Q   ++P LALKVLLQFD++INNAL                                  REV E  K D+VKIVACD K
Sbjct:    1 MSYQLYRNTTLGNTLQESLDELIQCGQITPHLALKVLLQFDKAINNALANRVKTRLTFKAGHLSTYRFCDNVWTFVLKDVEFREVQELVKADKVKIVACDGK 102
[Close]
BLAST of EMLSAG00000009644 vs. Select Arthropod Genomes
Match: EEB17916.1 (transcription initiation factor IIA gamma chain, putative [Pediculus humanus corporis])

HSP 1 Score: 86.6557 bits (213), Expect = 4.219e-23
Identity = 48/103 (46.60%), Postives = 61/103 (59.22%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQM--LSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAKS 69
            M+YQLYRNTTLG TLQE+LD+L+Q   ++P L +KVLLQFD+SINNAL+                                 REV E AKVD+VK+VACD ++
Sbjct:    1 MSYQLYRNTTLGTTLQESLDDLIQYGHITPQLGMKVLLQFDKSINNALSTRVKSKLTFRAGKLNTYRFCDNVWTFFLTDVEFREVQEIAKVDKVKVVACDGRN 103
[Close]
BLAST of EMLSAG00000009644 vs. Select Arthropod Genomes
Match: gb|EFA06253.1| (Transcription initiation factor IIA subunit 2-like Protein [Tribolium castaneum])

HSP 1 Score: 86.6557 bits (213), Expect = 4.970e-23
Identity = 50/104 (48.08%), Postives = 58/104 (55.77%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSIN--------------------------------NALNKREVSEFAKVDRVKIVACDAKSA 70
            M+YQLYRNTTLGHTLQE+LDEL+Q   ++P LA KVLL FD+SIN                                N +  REV E  KVD+VKIVACD KS 
Sbjct:    1 MSYQLYRNTTLGHTLQESLDELIQYGQITPQLACKVLLLFDKSINMTLATRVKSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQEITKVDKVKIVACDGKSV 104
[Close]
BLAST of EMLSAG00000009644 vs. Select Arthropod Genomes
Match: EFX87528.1 (hypothetical protein DAPPUDRAFT_230366 [Daphnia pulex])

HSP 1 Score: 85.8853 bits (211), Expect = 1.092e-22
Identity = 49/106 (46.23%), Postives = 61/106 (57.55%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQM--LSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAKSALP 72
            MAYQLYRNTTLG+TLQETLDEL+Q   ++P LALKVL+ FDR++NN+L +                                R+VSE  K + VKIVACD K+  P
Sbjct:    1 MAYQLYRNTTLGNTLQETLDELIQFGQITPQLALKVLVHFDRTMNNSLAQKVKNRLTFKAGKLNTYRFCDNVWTFLLSDVEFRDVSELCKGETVKIVACDGKAVPP 106
[Close]
BLAST of EMLSAG00000009644 vs. Select Arthropod Genomes
Match: XP_623063.1 (PREDICTED: transcription initiation factor IIA subunit 2 [Apis mellifera])

HSP 1 Score: 84.7297 bits (208), Expect = 2.530e-22
Identity = 49/103 (47.57%), Postives = 60/103 (58.25%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAKS 69
            M+YQLYRNTTLG+TLQE+LDEL+Q   ++P LA+KVLLQFD++IN AL                                  REV E A VD+VKIVACD K+
Sbjct:    1 MSYQLYRNTTLGNTLQESLDELIQYGQITPQLAIKVLLQFDKAINQALATRVKSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQEVAIVDKVKIVACDGKT 103
[Close]
BLAST of EMLSAG00000009644 vs. Select Arthropod Genomes
Match: gb|KPM06009.1| (transcription initiation factor IIA subunit 2-like protein [Sarcoptes scabiei])

HSP 1 Score: 83.5741 bits (205), Expect = 9.888e-22
Identity = 47/104 (45.19%), Postives = 59/104 (56.73%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAKSA 70
            M+YQ YRNTT+G+TLQETLDE +Q   +SP LA KVLLQFDR+IN AL+                                 REV +  K+D+VKIVACD K++
Sbjct:    1 MSYQFYRNTTIGNTLQETLDEFIQSGQISPQLASKVLLQFDRTINVALSHRVKARLTFKAGHLKTYRFCDNVWTFVLRDVEFREVQDLIKIDKVKIVACDGKNS 104
[Close]
BLAST of EMLSAG00000009644 vs. Select Arthropod Genomes
Match: gb|KFM59883.1| (Transcription initiation factor IIA subunit 2, partial [Stegodyphus mimosarum])

HSP 1 Score: 73.1738 bits (178), Expect = 4.287e-18
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNKREVSEFA-KVDRVKI 62
            M+YQLYRNTTLGHTLQE LDEL+Q   ++  LALKVLLQFD+ INNAL  +  S    KV   KI
Sbjct:    1 MSYQLYRNTTLGHTLQEALDELIQCGQITHQLALKVLLQFDKVINNALASKIKSRLTFKVGHKKI 65
[Close]
BLAST of EMLSAG00000009644 vs. Select Arthropod Genomes
Match: AAF45575.1 (TfIIA-S-2 [Drosophila melanogaster])

HSP 1 Score: 51.6026 bits (122), Expect = 2.591e-9
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQM--LSPALALKVLLQFDRSINNALNKREVSEFA-KVDRVKIVAC 65
            M YQ YR TTLG TLQ+TLDE+M+   ++  +A  VLL++D+SI+ AL     S  +   +R++   C
Sbjct:    1 MNYQHYRATTLGRTLQDTLDEMMERGDITKKIANLVLLRYDKSISTALKDHGTSNMSFTAERLETFRC 68
[Close]
BLAST of EMLSAG00000009644 vs. nr
Match: gi|225709032|gb|ACO10362.1| (Transcription initiation factor IIA subunit 2 [Caligus rogercresseyi] >gi|225711164|gb|ACO11428.1| Transcription initiation factor IIA subunit 2 [Caligus rogercresseyi])

HSP 1 Score: 115.161 bits (287), Expect = 1.149e-31
Identity = 66/105 (62.86%), Postives = 69/105 (65.71%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQM--LSPALALKVLLQFDRSINNALNKR--------------------------------EVSEFAKVDRVKIVACDAKSAL 71
            M+YQLYRNTTLGHTL+ETLDELMQM  L+PALALKVLLQFDRSINNALN R                                EVSE AKVDRVKIVACDAKSAL
Sbjct:    1 MSYQLYRNTTLGHTLRETLDELMQMQLLTPALALKVLLQFDRSINNALNTRVKTRLNFKADKLNTYRFCDNVWTFMLNDVEFKEVSELAKVDRVKIVACDAKSAL 105
[Close]
BLAST of EMLSAG00000009644 vs. nr
Match: gi|225717684|gb|ACO14688.1| (Transcription initiation factor IIA subunit 2 [Caligus clemensi])

HSP 1 Score: 112.079 bits (279), Expect = 2.079e-30
Identity = 64/105 (60.95%), Postives = 68/105 (64.76%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQM--LSPALALKVLLQFDRSINNALNKR--------------------------------EVSEFAKVDRVKIVACDAKSAL 71
            M+YQLYRNTTLGHTL+ETLDELMQM  L+PALALKVLLQFDRSIN ALN R                                EVSE AKVDRVKIVACDAKSA+
Sbjct:    1 MSYQLYRNTTLGHTLRETLDELMQMQLLTPALALKVLLQFDRSINTALNTRLKTRLNFKAEKLNTYRFCDNVWTFMLNEVEFKEVSELAKVDRVKIVACDAKSAI 105
[Close]
BLAST of EMLSAG00000009644 vs. nr
Match: gi|225710538|gb|ACO11115.1| (Transcription initiation factor IIA subunit 2 [Caligus rogercresseyi])

HSP 1 Score: 111.694 bits (278), Expect = 3.245e-30
Identity = 64/105 (60.95%), Postives = 68/105 (64.76%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQM--LSPALALKVLLQFDRSINNALNKR--------------------------------EVSEFAKVDRVKIVACDAKSAL 71
            M+YQLYRNTTLGH L+ETLDELMQM  L+PALAL+VLLQFDRSINNALN R                                EVSE AKVDRVKIVACDAKSAL
Sbjct:    1 MSYQLYRNTTLGHALRETLDELMQMQLLTPALALEVLLQFDRSINNALNTRVKTRLNFKADKLNTYRFCDNVWTFMLNDVEFKEVSELAKVDRVKIVACDAKSAL 105
[Close]
BLAST of EMLSAG00000009644 vs. nr
Match: gi|225718774|gb|ACO15233.1| (Transcription initiation factor IIA subunit 2 [Caligus clemensi])

HSP 1 Score: 110.923 bits (276), Expect = 5.571e-30
Identity = 63/105 (60.00%), Postives = 67/105 (63.81%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQM--LSPALALKVLLQFDRSINNALNKR--------------------------------EVSEFAKVDRVKIVACDAKSAL 71
            M+YQLYRNTTLGHT +ETLDELMQM  L+PALALKVLLQFDRSIN ALN R                                EVSE AKVDRVKIVACDAKSA+
Sbjct:    1 MSYQLYRNTTLGHTFRETLDELMQMQLLTPALALKVLLQFDRSINTALNTRLKTRLNFKAEKLNTYRFCDNVWTFMLNEVEFKEVSELAKVDRVKIVACDAKSAI 105
[Close]
BLAST of EMLSAG00000009644 vs. nr
Match: gi|195445356|ref|XP_002070290.1| (uncharacterized protein Dwil_GK11978 [Drosophila willistoni] >gi|194166375|gb|EDW81276.1| uncharacterized protein Dwil_GK11978 [Drosophila willistoni])

HSP 1 Score: 100.138 bits (248), Expect = 1.021e-25
Identity = 55/104 (52.88%), Postives = 64/104 (61.54%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAKSA 70
            M+YQLYRNTTLG+TLQE+LDEL+Q   ++PALA KVLLQFD+SINNALN+                                REV EF KVD+VKIVACD KS 
Sbjct:    1 MSYQLYRNTTLGNTLQESLDELIQYGQITPALAFKVLLQFDKSINNALNQRVKARVTFKAGKLNTYRFCDNVWTLMLNDVEFREVHEFVKVDKVKIVACDGKSG 104
[Close]
BLAST of EMLSAG00000009644 vs. nr
Match: gi|1060148811|ref|XP_017873157.1| (PREDICTED: transcription initiation factor IIA subunit 2 [Drosophila arizonae] >gi|1062651661|ref|XP_017962750.1| PREDICTED: transcription initiation factor IIA subunit 2 [Drosophila navojoa])

HSP 1 Score: 100.138 bits (248), Expect = 1.159e-25
Identity = 55/104 (52.88%), Postives = 64/104 (61.54%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAKSA 70
            M+YQLYRNTTLG+TLQE+LDEL+Q   ++PALA KVLLQFD+SINNALN+                                REV EF KVD+VKIVACD KS 
Sbjct:    1 MSYQLYRNTTLGNTLQESLDELIQYGQITPALAFKVLLQFDKSINNALNQRVKARVTFKAGKLNTYRFCDNVWTLMLNDVEFREVHEFVKVDKVKIVACDGKSG 104
[Close]
BLAST of EMLSAG00000009644 vs. nr
Match: gi|1060257206|ref|XP_017847169.1| (PREDICTED: transcription initiation factor IIA subunit 2 [Drosophila busckii] >gi|924562931|gb|ALC47589.1| TfIIA-S-2 [Drosophila busckii])

HSP 1 Score: 99.3673 bits (246), Expect = 1.824e-25
Identity = 55/103 (53.40%), Postives = 64/103 (62.14%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAKS 69
            M+YQLYRNTTLG+TLQE+LDEL+Q   ++PALA KVLLQFD+SINNALN+                                REV EF KVD+VKIVACD KS
Sbjct:    1 MSYQLYRNTTLGNTLQESLDELIQYGQITPALAFKVLLQFDKSINNALNQKVKARVTFKAGKLNTYRFCDNVWTLMLNDVEFREVHEFVKVDKVKIVACDGKS 103
[Close]
BLAST of EMLSAG00000009644 vs. nr
Match: gi|968102145|ref|XP_002054801.2| (uncharacterized protein Dvir_GJ24638 [Drosophila virilis] >gi|946567403|gb|EDW68321.2| uncharacterized protein Dvir_GJ24638 [Drosophila virilis])

HSP 1 Score: 100.138 bits (248), Expect = 1.907e-25
Identity = 55/104 (52.88%), Postives = 64/104 (61.54%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAKSA 70
            M+YQLYRNTTLG+TLQE+LDEL+Q   ++PALA KVLLQFD+SINNALN+                                REV EF KVD+VKIVACD KS 
Sbjct:   23 MSYQLYRNTTLGNTLQESLDELIQYGQITPALAFKVLLQFDKSINNALNQRVKARVTFKAGKLNTYRFCDNVWTLMLNDVEFREVHEFVKVDKVKIVACDGKSG 126
[Close]
BLAST of EMLSAG00000009644 vs. nr
Match: gi|194910164|ref|XP_001982085.1| (uncharacterized protein Dere_GG12397 [Drosophila erecta] >gi|195331428|ref|XP_002032403.1| GM23533 [Drosophila sechellia] >gi|195503049|ref|XP_002098488.1| uncharacterized protein Dyak_GE23914 [Drosophila yakuba] >gi|195573267|ref|XP_002104615.1| uncharacterized protein Dsimw501_GD18345 [Drosophila simulans] >gi|1036058990|ref|XP_016932629.1| PREDICTED: transcription initiation factor IIA subunit 2 [Drosophila suzukii] >gi|1036736534|ref|XP_016949817.1| PREDICTED: transcription initiation factor IIA subunit 2 [Drosophila biarmipes] >gi|1036758148|ref|XP_017040205.1| PREDICTED: transcription initiation factor IIA subunit 2 [Drosophila ficusphila] >gi|1036811427|ref|XP_017112259.1| PREDICTED: transcription initiation factor IIA subunit 2 [Drosophila elegans] >gi|1037003572|ref|XP_017008780.1| PREDICTED: transcription initiation factor IIA subunit 2 [Drosophila takahashii] >gi|1037092858|ref|XP_017083968.1| PREDICTED: transcription initiation factor IIA subunit 2 [Drosophila eugracilis] >gi|190656723|gb|EDV53955.1| uncharacterized protein Dere_GG12397 [Drosophila erecta] >gi|194121346|gb|EDW43389.1| GM23533 [Drosophila sechellia] >gi|194184589|gb|EDW98200.1| uncharacterized protein Dyak_GE23914 [Drosophila yakuba] >gi|194200542|gb|EDX14118.1| GD18345 [Drosophila simulans] >gi|900915897|gb|KMZ05399.1| uncharacterized protein Dsimw501_GD18345 [Drosophila simulans])

HSP 1 Score: 98.9821 bits (245), Expect = 2.533e-25
Identity = 54/104 (51.92%), Postives = 63/104 (60.58%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAKSA 70
            M+YQLYRNTTLG+TLQE+LDEL+Q   ++P LA KVLLQFD+SINNALN+                                REV EF KVD+VKIVACD KS 
Sbjct:    1 MSYQLYRNTTLGNTLQESLDELIQYGQITPGLAFKVLLQFDKSINNALNQRVKARVTFKAGKLNTYRFCDNVWTLMLNDVEFREVHEFVKVDKVKIVACDGKSG 104
[Close]
BLAST of EMLSAG00000009644 vs. nr
Match: gi|1036851684|ref|XP_017023461.1| (PREDICTED: transcription initiation factor IIA subunit 2 [Drosophila kikkawai])

HSP 1 Score: 98.9821 bits (245), Expect = 2.985e-25
Identity = 54/104 (51.92%), Postives = 64/104 (61.54%), Query Frame = 0 
Query:    1 MAYQLYRNTTLGHTLQETLDELMQ--MLSPALALKVLLQFDRSINNALNK--------------------------------REVSEFAKVDRVKIVACDAKSA 70
            M+YQLYRNTTLG+TLQE+LDEL+Q   ++P LA KVLLQFD+SINNALN+                                REV EF KVD+VKIVACD KS+
Sbjct:    1 MSYQLYRNTTLGNTLQESLDELIQYGQITPGLAFKVLLQFDKSINNALNQRVKARVTFKAGKLNTYRFCDNVWTLMLNDVEFREVHEFVKVDKVKIVACDGKSS 104
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009644 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 24
Match NameE-valueIdentityDescription
-6.505e-631.00symbol:Afu2g15680 species:746128 "Aspergillus fumi... [more]
-9.647e-631.00symbol:AN2181 species:162425 "Aspergillus nidulans... [more]
-7.390e-545.24symbol:TOA2 species:5476 "Candida albicans" [GO:00... [more]
-5.410e-442.86symbol:CPAR2_402630 species:5480 "Candida parapsil... [more]

Pages

back to top
BLAST of EMLSAG00000009644 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592784924|gb|GAXK01169644.1|1.429e-2857.55TSA: Calanus finmarchicus comp26_c0_seq1 transcrib... [more]
gi|592832708|gb|GAXK01124836.1|9.461e-533.33TSA: Calanus finmarchicus comp25313_c3_seq1 transc... [more]
back to top
BLAST of EMLSAG00000009644 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000096442.172e-56100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s61:239549... [more]
EMLSAP000000001012.062e-3765.42pep:novel supercontig:LSalAtl2s:LSalAtl2s101:13111... [more]
back to top
BLAST of EMLSAG00000009644 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
gi|1711664|sp|P52656.1|T2AG_DROME1.398e-2650.96RecName: Full=Transcription initiation factor IIA ... [more]
gi|2811071|sp|O08950.1|T2AG_RAT5.242e-2348.04RecName: Full=Transcription initiation factor IIA ... [more]
gi|327488497|sp|B7Q1Q9.1|T2AG_IXOSC7.789e-2349.02RecName: Full=Transcription initiation factor IIA ... [more]
gi|20140818|sp|Q9IA78.1|T2AG_PAROL9.452e-2349.02RecName: Full=Transcription initiation factor IIA ... [more]
gi|1729806|sp|P52657.1|T2AG_HUMAN1.371e-2248.04RecName: Full=Transcription initiation factor IIA ... [more]
gi|20140636|sp|Q90YG6.1|T2AG_ONCMY3.606e-2247.06RecName: Full=Transcription initiation factor IIA ... [more]
gi|74853880|sp|Q54ND1.1|T2AG_DICDI7.308e-1338.38RecName: Full=Transcription initiation factor IIA ... [more]
gi|20140870|sp|Q9NEX2.2|T2AG_CAEEL3.217e-1237.14RecName: Full=Transcription initiation factor IIA ... [more]
gi|20141796|sp|Q39236.2|T2AG_ARATH3.579e-1139.39RecName: Full=Transcription initiation factor IIA ... [more]
gi|122169632|sp|Q0DLD3.1|T2AG_ORYSJ1.917e-1034.34RecName: Full=Transcription initiation factor IIA ... [more]

Pages

back to top
BLAST of EMLSAG00000009644 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 10
Match NameE-valueIdentityDescription
AAF56199.16.776e-2750.96Transcription-factor-IIA-S [Drosophila melanogaste... [more]
EAA09250.41.431e-2347.57AGAP004370-PA [Anopheles gambiae str. PEST][more]
gb|EEC12781.1|3.775e-2349.02transcription initiation factor IIA gamma chain, p... [more]
EEB17916.14.219e-2346.60transcription initiation factor IIA gamma chain, p... [more]
gb|EFA06253.1|4.970e-2348.08Transcription initiation factor IIA subunit 2-like... [more]
EFX87528.11.092e-2246.23hypothetical protein DAPPUDRAFT_230366 [Daphnia pu... [more]
XP_623063.12.530e-2247.57PREDICTED: transcription initiation factor IIA sub... [more]
gb|KPM06009.1|9.888e-2245.19transcription initiation factor IIA subunit 2-like... [more]
gb|KFM59883.1|4.287e-1863.08Transcription initiation factor IIA subunit 2, par... [more]
AAF45575.12.591e-942.65TfIIA-S-2 [Drosophila melanogaster][more]
back to top
BLAST of EMLSAG00000009644 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|225709032|gb|ACO10362.1|1.149e-3162.86Transcription initiation factor IIA subunit 2 [Cal... [more]
gi|225717684|gb|ACO14688.1|2.079e-3060.95Transcription initiation factor IIA subunit 2 [Cal... [more]
gi|225710538|gb|ACO11115.1|3.245e-3060.95Transcription initiation factor IIA subunit 2 [Cal... [more]
gi|225718774|gb|ACO15233.1|5.571e-3060.00Transcription initiation factor IIA subunit 2 [Cal... [more]
gi|195445356|ref|XP_002070290.1|1.021e-2552.88uncharacterized protein Dwil_GK11978 [Drosophila w... [more]
gi|1060148811|ref|XP_017873157.1|1.159e-2552.88PREDICTED: transcription initiation factor IIA sub... [more]
gi|1060257206|ref|XP_017847169.1|1.824e-2553.40PREDICTED: transcription initiation factor IIA sub... [more]
gi|968102145|ref|XP_002054801.2|1.907e-2552.88uncharacterized protein Dvir_GJ24638 [Drosophila v... [more]
gi|194910164|ref|XP_001982085.1|2.533e-2551.92uncharacterized protein Dere_GG12397 [Drosophila e... [more]
gi|1036851684|ref|XP_017023461.1|2.985e-2551.92PREDICTED: transcription initiation factor IIA sub... [more]

Pages

back to top
BLAST of EMLSAG00000009644 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s61supercontigLSalAtl2s61:239549..239882 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s61-processed-gene-2.20
NoteTranscription initiation factor IIA subunit 2
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009644 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009644EMLSAT00000009644-705491Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s61:239549..239882-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009644-692410 ID=EMLSAG00000009644-692410|Name=EMLSAG00000009644|organism=Lepeophtheirus salmonis|type=gene|length=334bp|location=Sequence derived from alignment at LSalAtl2s61:239549..239882- (Lepeophtheirus salmonis)
ATGGCGTACCAACTTTATCGTAATACAACTCTGGGACATACACTTCAAGA
AACTCTTGATGAACTCATGCAAATGCTCTCACCTGCTTTAGCGTTAAAAG
TACTTCTGCAGTTTGATCGATCCATCAATAATGCTCTCAACAAACGAGTT
AAAATACGTCGAAAAATTAAACACCTATCGCTTTTGCGATAACGTTTGGA
CTTATTTGCTATATGAGGTTGAATTCAAGGAGGTATCAGAATTTGCAAAA
GTAGACCGTGTCAAAATCGTTGCATGTGATGCTAAATCGGCTCTACCAAT
CGTTTCGACGACTAAGTCCTATCTCAATGATTAA
back to top
Add to Basket