EMLSAG00000009674, EMLSAG00000009674-692440 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009674
Unique NameEMLSAG00000009674-692440
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000009674 vs. C. finmarchicus
Match: gi|592761110|gb|GAXK01193303.1| (TSA: Calanus finmarchicus comp2130693_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 3.479e-6
Identity = 27/77 (35.06%), Postives = 40/77 (51.95%), Query Frame = 0 
Query:  251 EFECLASSREHYPTHSYDSNKTMQPVQKDKLTISKPTIQMSSLTTYRKNTDRPLNFMSLKPALRFNQQYRIPDQIDW 327
            +F    SS+EHY    Y    +  P    K  I +P+  + + TTYR N D   ++  L+ + RF+   RIPD+IDW
Sbjct:    3 DFHRSVSSKEHYKEQPY----SRTPACIRKQMIPRPSGPLHATTTYRDNIDEKSHYEGLRRSSRFDYGLRIPDKIDW 221

HSP 2 Score: 44.669 bits (104), Expect = 3.545e-4
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 0 
Query:  147 STMGRAFRFNEDGFQKARNHPVMIEPQIKIAIEGDR 182
            ST  R FRF ++GF  AR+ P++ +P +KI IEGDR
Sbjct:  630 STSRRNFRFTQEGFDMARSTPIVHKPTLKIGIEGDR 737
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BLAST of EMLSAG00000009674 vs. L. salmonis peptides
Match: EMLSAP00000009674 (pep:novel supercontig:LSalAtl2s:LSalAtl2s623:293405:297867:1 gene:EMLSAG00000009674 transcript:EMLSAT00000009674 description:"augustus_masked-LSalAtl2s623-processed-gene-3.1")

HSP 1 Score: 674.47 bits (1739), Expect = 0.000e+0
Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 0 
Query:    1 MSWRDKSVGKPQNLTEIKPLIKSASSNRYSRHFNSPKKSHPRPLTSRVLRGSTPCLSSNKESRASSGFQGQEDPRYKEDWITSMRVRLESLNLRSSDREEKPRTVSRPKGLSSVSSNSLSLLPLAREVANSSGKFNSNQCLSNGLRSTMGRAFRFNEDGFQKARNHPVMIEPQIKIAIEGDRMLSTEKGENFSGNFDNIERKNKSNVLNGKVLNQGKPRKVTSYQEDFGIKKLSTSNMRERISQPNGNGNEFECLASSREHYPTHSYDSNKTMQPVQKDKLTISKPTIQMSSLTTYRKNTDRPLNFMSLKPALRFNQQYRIPDQIDWI 328
            MSWRDKSVGKPQNLTEIKPLIKSASSNRYSRHFNSPKKSHPRPLTSRVLRGSTPCLSSNKESRASSGFQGQEDPRYKEDWITSMRVRLESLNLRSSDREEKPRTVSRPKGLSSVSSNSLSLLPLAREVANSSGKFNSNQCLSNGLRSTMGRAFRFNEDGFQKARNHPVMIEPQIKIAIEGDRMLSTEKGENFSGNFDNIERKNKSNVLNGKVLNQGKPRKVTSYQEDFGIKKLSTSNMRERISQPNGNGNEFECLASSREHYPTHSYDSNKTMQPVQKDKLTISKPTIQMSSLTTYRKNTDRPLNFMSLKPALRFNQQYRIPDQIDWI
Sbjct:    1 MSWRDKSVGKPQNLTEIKPLIKSASSNRYSRHFNSPKKSHPRPLTSRVLRGSTPCLSSNKESRASSGFQGQEDPRYKEDWITSMRVRLESLNLRSSDREEKPRTVSRPKGLSSVSSNSLSLLPLAREVANSSGKFNSNQCLSNGLRSTMGRAFRFNEDGFQKARNHPVMIEPQIKIAIEGDRMLSTEKGENFSGNFDNIERKNKSNVLNGKVLNQGKPRKVTSYQEDFGIKKLSTSNMRERISQPNGNGNEFECLASSREHYPTHSYDSNKTMQPVQKDKLTISKPTIQMSSLTTYRKNTDRPLNFMSLKPALRFNQQYRIPDQIDWI 328
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009674 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009674 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592761110|gb|GAXK01193303.1|3.479e-635.06TSA: Calanus finmarchicus comp2130693_c0_seq1 tran... [more]
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BLAST of EMLSAG00000009674 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000096740.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s623:29340... [more]
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BLAST of EMLSAG00000009674 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009674 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009674 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009674 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s623supercontigLSalAtl2s623:293405..297867 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s623-processed-gene-3.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009674 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009674EMLSAT00000009674-705521Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s623:293405..297867+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009674-692440 ID=EMLSAG00000009674-692440|Name=EMLSAG00000009674|organism=Lepeophtheirus salmonis|type=gene|length=4463bp|location=Sequence derived from alignment at LSalAtl2s623:293405..297867+ (Lepeophtheirus salmonis)
ATGTCGTGGAGGGATAAATCAGTCGGAAAACCCCAAAATCTAACAGAAAT
AAAACCTCTCATAAAATCGGCAAGCAGCAATCGTTATAGTCGTCACTTTA
ACAGTCCTAAAAAAAGTCATCCAAGACCTCTCACATCAAGAGTTCTACGT
GGATCCACACCATGTCTTTCATCGAACAAAGAATCTCGCGCATCTTCCGG
ATTTCAAGGACAAGAGGATCCGAGATACAAAGAAGATTGGATCACAAGTA
TGCGTGTTCGGCTTGAGAGTTTGAATTTGAGATCGTCGGATAGAGAGGAA
AAACCCCGCACTGTTAGTCGACCAAAAGGTCTTTCATCAGTGTCTTCAAA
TAGTTTAAGCTTATTACCTCTTGCAAGGGAAGTAGCAAATAGCAGTGGAA
AGTTTAATAGTAATCAATGTCTCAGCAATGGTTTGCGATCGACGATGGGA
AGAGCGTTCAGGTTTTATACCTTATTATTTTTTGCATGAATACCCCTCTC
TTCAAGGATTATAAATATTTAAAAAAAATAAAAAATACCCTTGATTTTTT
AATTTATATATCAAACTCATTTCTCACGTGACTAAATGAATTTTTGAAAA
AGAAACAAAACTATTTATTTAAATGGGATTATGGCTTTTTAAAGTGTTCA
AAAATTCCAATTGCAGCGAAAAATCTTATATTTCTATTTGCAATCCCCCA
AATATTCATATCGAGATCAAACATCCAGTTTGAATAAATTAATTAGAGTT
GTTTATGAGTCCAAATAAACTAAGGAGTTGGTTTAAGTTTCAGTTCAATC
GTGTCTGAAGTCCCAGATTGGACTCAAGTGTGAATCACGTGCTGGAAGTG
CAAAATCTGAGTCAGTCATAATTCAAATTAATAGTAAATCATATAAAAAG
TGAAACCTTTTTTTCAAAATCCTAAAATTGATTTTTTTTTGGGGGGGGGG
GTTAGGTTAAATTTCTCTMCTTTTGTGGGGGTGGGGGGCTMCAGCCTCTC
CTCACCTGCGGACGTCCCTCATATCAATTATATCCTTTCAGATTAACAAA
GTTTGCATAAGTAATAAATTATATCTCTCGTCATTATGCGACAGATTCAT
AAACTTTTTCTTAAAAACTCCGTATAGAAACCATAAGTTGGTGACCAATG
TTTTAATATTACATACATATTATTTTTTGTAAAAAAACGGAAAAGAAGAA
GAAAACACCCCAGTTTTTCACTCACATTCTAATACTATTCTTACATATGT
TTGTAGATCTATTAGAAAACATAACTGTGTCTCATTTTGATTATTTTAAA
TCACTGCTTCAGAGCCCATGAGATCCTCCACTGCTGTGTGGTCTGCAATC
AGGAATTACATTGTATGTTATGTAGACTTAATTGGCCATTATGAAGGAAG
GGACGGAAATAGAGGGGGGAGCAGTTTTTAAAGTTATAATTGGTACTTAT
CGTTTAAAGAAAACAAGAATAAAAACATACACAAGAGTCCAAAGGGGTGT
TCCTTCCCCTTATTATTAGAGCATTTAAAACAGCAAAACAAAAATGCAAA
AATATAAATTTTCTTTTGAAATGAGGGCGCTATTATGCACTTTTTATTAG
TAATAATACCTTACTTTTGGTAAAACATAAGCACTTACAAGGGTTCCAAC
ATATTTTTTTATTATAATACAAAATATGACCAGTAGGCAAGTCAAAGAAA
CATTTATATTTAACATGTTGTTTAAAAAAAATAATCGCGGAACAAACTCA
TAGCTTTTCTCACTCAACTTTTCATTATGTTCATGGGAAATTAAACAAGG
ACGGATTCATAAATTACGCGTACTACTATTATCGACTCGGGTATTAATAT
AATTTTAAATACAAATCGTTGTCAAATACTATAGTTGTACCCTTAAATCA
AGCAAATTTATTTATTAGATAATTAAATAAAGGAACAAATTCATAGTTTT
CCACAACTTTTCATTTGAATTTACAATAGATTCAACGAGGACGGATTTCA
AAAGGCTAGAAATCATCCAGTTATGATTGAACCCCAAATAAAAATTGCTA
TTGAGGGGGACCGTATGTTATCTACGGAAAAAGGTGAGAATTTTTCTGGG
AATTTTGATAATATAGAGCGGAAGAATAAGTCCAACGTATTGAATGGAAA
AGTATTGAATCAAGGCAAGCCTAGGAAAGTGACTTCATATCAAGAAGACT
TTGGAATTAAAAAGTTATCCACGTAATCTTTCTTTTTTAAATAATTTCAA
ATGCACATAATTAATTAATTTATTTACTCTCAATATTTCTAGGAGTAACA
TGCGTGAGAGGATAAGTCAGCCCAATGGGAATGGAAACGAGTTTGAATGT
CTTGCTAGTTCTCGAGAACATTATCCTACCCATAGCTACGATAGTAACAA
AACTATGCAACCTGTTCAAAAGGATAAACTAACAATTTCCAAACCAACTA
TACAAATGTCTTCATTAACAACATATCGTAAAAACACGGATCGGCCACTT
AATTTTATGAGTTTAAAGCCTGCTCTAAGGTTCAATCAACAGTATCGAAT
ACCTGATCAAATCGATTGGATATAAAAAGAAGACATAAATGAGTACAAAT
TGGAAAAGAGTGAATGAACTTCCATCGTTTTATAAACAAAGATTATATTC
AGATAATGATCGTAGGTGTTTCATTGAAATGTGATTTATGGTTCCCCGGT
AAAAACAATTTATTGGAAAAAATTAAACCTTCAGCCTATTGTTGATTTTT
CATATGTTTACAAAAAATCTGAATACTGCCTATATAGACTTAAAAAAATC
CAATATCTTTTAATGTTTTTTACTTTCTTTATTAGACCACAATATTTGAA
TTGGGGCATTGTATCAAGATATTGGCAAATAATATAGGATATTTATCGGT
CCATATAAAAAGTATTTATTGAAATGTGTCTTCATATCTCAGATAGGATG
ATTTCTGACGATTATACATTCTATCAAACCAGTCTCATAAATTATTTATT
ATTAAGTTACAAGCGTAAATATAGGTACTGTATTATACAAAGTAAACAAT
ATAATTATAAATCTCCTATTTAGATAATATGTAATTATATATCTATAATA
ATCATAATCTATTTTAAATAATAATAGCAATAATTAATATGAATTATCAT
TATAATAAATTTAGAATCCAATTCATATATTTGGATACATCAACAAATAT
ACTTTGATCCCTAGAGCAAGTTGTTCCAGAACTCAGTACTCCAGCAAGTT
CGAATGATCCATCTTCATTTTGACAAGACAAGGGGCTTCCTGTATCTAAT
GCAATCTATCGAAATAACCAAAAAAATATATATATATATATTTATTCATA
GTTGTAATAATAAAATTATAATAATTACAAAGCAATTATCTTTGGCCATG
GTATTGTGGGATCGCTTTTCTCCCAGACACACGGTTCCTTGCAATGATCT
ATAAGAACTCTGAATATTATCAGGAGATTCGTTGGAAACTGGAGCGTTTC
GATTGCACTCATCCCTCTCCAGAATACTCAAAACCGTTGTTCTCAAGATC
CCATCCGTCACTTCTGTAAAAATTATTGGGTAGATATTAGAGCTCTCATA
TAAACTAAAGGAGTGATTTACCTGTGGGTATTTCATTTCGAATAGCTCTT
CCGTAGCCAGTGATAGTGCAATTGGATTCCTTGTATGATTTCTTGTCTGA
TTGAGGTAAGCAAAGAAGGCAGACTGTCTCTGTGAGTTCCATATCCTTAT
TTATTTGAATGATTCCTGAAATAGAGGGGGAAATCTATATAAATAAGTAT
GTCAAAGTAATGAAGAATAATTTATTTATTCGAACCAATGTCATTTTCTT
TCGTGAGAAGTCCAAAATCTGGATGCACTTCGACTTTTTTTATGGGTCTT
TCTTGGACTCCAAAGGGTAGATTTATCATTAAATTAGAATCCCCTGCAAC
TACTTTATATTTCTCAATACCACGACTCATTATCCTAAAAAATGATATGG
TATTTGTAGGTGATTGACACAAGAATAAACACACTACTATCTTACTTGCT
TGAACAGGATGCTGTGGTCATCACCAAGTCATTTCTCACTAGAGTCCCCG
TACAAATTAATTTATTCGTCTCCAAATCTACAATGGCAGTCAGCCAACAG
TAAATAACCGTTGATGTTACTTTAGCTTCATCCTTATTGTTGACTCTATG
CTGTGAACTACTGGATGAGGTTTTCCCAGTAACCCACGAGGCTACTAGAT
CTGGCAGAAAATTAGCAGCGGCTCTCCCAAAAGCCTGGAATACAGCTTGA
CCCCCAAGTACTCCACATTTCTCCTCCGACACTAAACGACGTTCAAAAGG
CCTATCTATGGATGGCGTGAGGGTTGTTGTTGCTATGATAGAGGCTTCCG
TCGTTGAAACGGTGGTGGTGGTGGTGGTATCTGTTGTTGATGTATCGGAT
GGGAGAGCAGCGG
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