EMLSAG00000011145, EMLSAG00000011145-693911 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011145
Unique NameEMLSAG00000011145-693911
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000011145 vs. C. finmarchicus
Match: gi|592903326|gb|GAXK01055049.1| (TSA: Calanus finmarchicus comp85347_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 1.746e-3
Identity = 46/156 (29.49%), Postives = 62/156 (39.74%), Query Frame = 0 
Query:  105 QAYKTCFCSSENCNINDVIKPDMVISTGEKGERKCYTCGDLSSKKPCKEEEITDKEKTLKDCETGNCFIVESKRTKSDDPVTEVYKGCMKKDSETTYAYGSLKFDDKEKFEGHYYVCNKNKCNYDKKSWEDSSVAGLTSSFVLIFA--GLVSYLMF 258
             AY  C C  E CN       D   + G K   +CY C        C E       +   +   G C++ ++K    DD V E  +GC +      Y     K  +K   E HY  C+ ++CN    S ED +  G T+S V  FA   LVS L  
Sbjct:  311 HAYTFCNCHGEGCN------KDWGTAAGPK--IQCYNCDSNEENAKCDETNFGSLVECPIEARKG-CYMSQAKF--GDDTVFE--RGCTEVTDPALYV---CKDINKNGQELHYCNCHGDECNKSWSSAEDGATGGATTSIVSFFAMMSLVSVLYL 730
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BLAST of EMLSAG00000011145 vs. C. finmarchicus
Match: gi|592856539|gb|GAXK01101005.1| (TSA: Calanus finmarchicus comp7561_c4_seq2 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 6.586e+0
Identity = 29/109 (26.61%), Postives = 49/109 (44.95%), Query Frame = 0 
Query:  159 KEKTLKDCETGNCFIVESKRTKSDDPVTEVYKGC-MKKDSETTYAYGSLKFDDKEKFEGHYYVCNKNKCNYDKKSWEDSSVAGLTSSF-------VLIFAGLVSYLMFN 259
            KE+  K  +     I  +K    D  + E Y+G  ++KDS   Y    ++    +KF   YYV  + +   DKKSW+    A + ++F       +   AG++  + FN
Sbjct:  715 KERAQKKADQITPHIAYAKEILDDKLINEFYEGIDLQKDS---YLKNIIRL---KKFISLYYV-KEFRTPIDKKSWKTHGGAAIVNAFYNPAENSIQFPAGILDGVFFN 1020
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BLAST of EMLSAG00000011145 vs. C. finmarchicus
Match: gi|592856540|gb|GAXK01101004.1| (TSA: Calanus finmarchicus comp7561_c4_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 6.633e+0
Identity = 29/109 (26.61%), Postives = 49/109 (44.95%), Query Frame = 0 
Query:  159 KEKTLKDCETGNCFIVESKRTKSDDPVTEVYKGC-MKKDSETTYAYGSLKFDDKEKFEGHYYVCNKNKCNYDKKSWEDSSVAGLTSSF-------VLIFAGLVSYLMFN 259
            KE+  K  +     I  +K    D  + E Y+G  ++KDS   Y    ++    +KF   YYV  + +   DKKSW+    A + ++F       +   AG++  + FN
Sbjct:  715 KERAQKKADQITPHIAYAKEILDDKLINEFYEGIDLQKDS---YLKNIIRL---KKFISLYYV-KEFRTPIDKKSWKTHGGAAIVNAFYNPAENSIQFPAGILDGVFFN 1020
[Close]
BLAST of EMLSAG00000011145 vs. C. finmarchicus
Match: gi|592856543|gb|GAXK01101001.1| (TSA: Calanus finmarchicus comp7561_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 8.783e+0
Identity = 26/90 (28.89%), Postives = 41/90 (45.56%), Query Frame = 0 
Query:  157 TDKEKTLKDCETGNCFIVESKRTKSDDPVTEVYKGC-MKKDSETTYAYGSLKFDDKEKFEGHYYVCNKNKCNYDKKSWEDSSVAGLTSSF 245
            T K K     +     +  +K    DD + E Y G  ++KDS   Y    L+    +KF   YY+ N+ +   DKKSW+    A + ++F
Sbjct: 1593 TTKAKAHTKVDQITPHMAYAKEILDDDLINEFYTGLNLEKDS---YLKNMLRL---KKFINAYYI-NEFRNPIDKKSWKTHGGAAIVNAF 1841
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BLAST of EMLSAG00000011145 vs. L. salmonis peptides
Match: EMLSAP00000011145 (pep:novel supercontig:LSalAtl2s:LSalAtl2s757:8260:10465:1 gene:EMLSAG00000011145 transcript:EMLSAT00000011145 description:"maker-LSalAtl2s757-augustus-gene-0.10")

HSP 1 Score: 523.857 bits (1348), Expect = 0.000e+0
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0 
Query:    1 MKIVLFTFASILLVHCFSLSSALLSCYKCEKDGKCEDQGTKEECNKDGTNCYYTMTGDSNKIKGCKAEKKETEAPQLNGLKDLNPTPTMKWDGCFDITKQVDNKQAYKTCFCSSENCNINDVIKPDMVISTGEKGERKCYTCGDLSSKKPCKEEEITDKEKTLKDCETGNCFIVESKRTKSDDPVTEVYKGCMKKDSETTYAYGSLKFDDKEKFEGHYYVCNKNKCNYDKKSWEDSSVAGLTSSFVLIFAGLVSYLMFN 259
            MKIVLFTFASILLVHCFSLSSALLSCYKCEKDGKCEDQGTKEECNKDGTNCYYTMTGDSNKIKGCKAEKKETEAPQLNGLKDLNPTPTMKWDGCFDITKQVDNKQAYKTCFCSSENCNINDVIKPDMVISTGEKGERKCYTCGDLSSKKPCKEEEITDKEKTLKDCETGNCFIVESKRTKSDDPVTEVYKGCMKKDSETTYAYGSLKFDDKEKFEGHYYVCNKNKCNYDKKSWEDSSVAGLTSSFVLIFAGLVSYLMFN
Sbjct:    1 MKIVLFTFASILLVHCFSLSSALLSCYKCEKDGKCEDQGTKEECNKDGTNCYYTMTGDSNKIKGCKAEKKETEAPQLNGLKDLNPTPTMKWDGCFDITKQVDNKQAYKTCFCSSENCNINDVIKPDMVISTGEKGERKCYTCGDLSSKKPCKEEEITDKEKTLKDCETGNCFIVESKRTKSDDPVTEVYKGCMKKDSETTYAYGSLKFDDKEKFEGHYYVCNKNKCNYDKKSWEDSSVAGLTSSFVLIFAGLVSYLMFN 259
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011145 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011145 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592903326|gb|GAXK01055049.1|1.746e-329.49TSA: Calanus finmarchicus comp85347_c1_seq1 transc... [more]
gi|592856539|gb|GAXK01101005.1|6.586e+026.61TSA: Calanus finmarchicus comp7561_c4_seq2 transcr... [more]
gi|592856540|gb|GAXK01101004.1|6.633e+026.61TSA: Calanus finmarchicus comp7561_c4_seq1 transcr... [more]
gi|592856543|gb|GAXK01101001.1|8.783e+028.89TSA: Calanus finmarchicus comp7561_c3_seq1 transcr... [more]
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BLAST of EMLSAG00000011145 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000111450.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s757:8260:... [more]
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BLAST of EMLSAG00000011145 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011145 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011145 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011145 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s757supercontigLSalAtl2s757:8260..10465 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s757-augustus-gene-0.10
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011145 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011145EMLSAT00000011145-706992Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s757:8260..10465+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011145-693911 ID=EMLSAG00000011145-693911|Name=EMLSAG00000011145|organism=Lepeophtheirus salmonis|type=gene|length=2206bp|location=Sequence derived from alignment at LSalAtl2s757:8260..10465+ (Lepeophtheirus salmonis)
AAAAGCAAGAAATTAAAAGACTGCCTATTTGAGGCAATCTATAAATCTCC
AGAATAATTTCATTTATTTATCTCCAYAACAACATGTGGAAAAGCACATA
GTTTCTTTATTTACTTTCCTTTATCTTTATTGTCTTCCAGGTCTACTTAG
ATAAGGAAAACTTACATCGCAAATCTCAACAGAAGAGTTGAAGTCAGCTG
TGAGCTTCTCGTGCTTTAGCATATATATCAAGGCTTGAATACTTTAAATA
ACATTATCAAACAACCTCTTCCAACGCTGTTGTCCAAAATGAAGATCGTT
TTATTTACTTTTGCTTCCATTCTTTTGGTTCATTGTAATTTTAAGAAAAG
GATTTATATAAATATTGAAATTACAATTGGTTTTTCTTTCAATTAATATA
GGTTTCAGTCTTTCTTCAGCACTACTCTCTTGCTATAAATGTGAGAAAGA
TGGCAAGTGTGAGGATCAAGGAACTAAAGAAGAATGTAATAAGGATGGAA
CTAATTGCTACTATACAATGACTGGTAAGTTTATTATATATTTCCTTCAA
GTTAAATTTCATGTTCAAATATCAATAGGTGATTCTAATAAAATTAAGGG
GTGTAAAGCCGAGAAGAAGGAAACTGAAGCCCCTCAACTGAATGGATTGA
AGGATTTAAATCCCACTCCAACTATGAAATGGGATGGTTGTTTTGATATA
ACCAAGCAGGTTGATAACAAACAGGCCGTAAGTAAAGACATCTTCCATGG
CGAAATGAATTAAGTATATAAATTCTAAACTAATATATATATTTGTGTTA
TAGTATAAAACCTGTTTCTGCTCATCCGAAAATTGCAATATAAATGATGT
TATCAAACCTGACATGGTAATTTCAACTGGAGAAAAGGGAGAGCGAAAAT
GTTATACTTGTGGAGATCTATCCTCAAAAAAGCCATGTAAGGAAGAAGAA
ATTACAGATAAGGAAAAAACTCTCAAAGATTGTGAAACCGGGAACTGCTT
CATTGTTGAGTCCAGTAAGAGCAATGCAAAAATTGAATAATCATATTATA
CTTTACATGTTTAATTATTTAGAGAGAACTAAATCCGATGATCCAGTGAC
AGAAGTTTACAAGGGTTGCATGAAAAAAGACTCTGAAACGACATATGCCT
ACGGCTCTCTGAAATTTGATGATAAAGAGAAAGTAAGAATCATTTTATTT
AAATTTGCATTAGGGCGGTTTGTTTATAATTTTTTCGATTATGGGTAGTT
CGAAAAACTTGTGGTATAGTAACATTACCCTAGAATGTCATTCTTTGGTG
GTAAAGCATCTGGTAAAAAGTTTAAAAGGAGCTTAAAGTTATTTATTTCG
TCACTAAAGATTAAATTGCAGCATTAACCATTATTTTGTAAGAATTAAGT
TACTATGGGCGTTATACTAAGCATTAAAAAAGATGTGCACTATATGTGGA
TCATCAAATTTTCATAACTATTGTCTCTTTTTTTGTTCCATGGGACAAAT
TTGAGAATAAAACTGTTTTAACATTCCTGTAGGTTAAAACAATGTCTATC
AAAATTACTTAATGCAAAATAACTAAAAATGTCTTTTTATTCTCTATTTA
CAAAATAAAAAGTTTGACAGCATGACAACTTTTCCGCACAAGCTGTAATC
CAAATTCAAAAAAAGTTATAAATCAAACTGCTCTAACTTTAATATATATT
GTATTTTCATAAACTCGTTTCTTTTTTCTCTATTTTTGCTAGTTTGAAGG
ACACTATTACGTTTGTAACAAGAATAAATGTAACTACGATAAAAAGTCCT
GGGAGGACTCTAGTGTTGCCGGACTTACGTCCTCATTTGTTCTTATTTTC
GCGGGATTAGTCTCGTATCTCATGTTTAACTAAAAAAATGGAGACTTGGG
GATTTGGTATAGAAAATAAATTCTCATCATTGTTCAAAGTTAATTTTGTT
ATGTTTCCATGTAGAAAGTTATAGCAACACAAATAAATCTTCATTGTAGC
CACTGTAAATTATACCAGCATCGAGAAAATAAATATACATATTGTATTAA
TTGAATTTGTCAGCCTACTAAAATTTGAGCTCGTGCTGTAAATATCTGAA
TACATGTAAAATATAATGCAATAGTAATTTCGTAAATGAAATGAAAGGAT
TTTAAACAGTGATATGAAATAAACCCTCTAGGTAAAATTAAAAGACTCGA
GGAAAA
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