EMLSAG00000011617, EMLSAG00000011617-694383 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592799004|gb|GAXK01155564.1| (TSA: Calanus finmarchicus comp105190_c0_seq1 transcribed RNA sequence) HSP 1 Score: 40.4318 bits (93), Expect = 3.573e-3 Identity = 18/38 (47.37%), Postives = 24/38 (63.16%), Query Frame = 0 Query: 29 QDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYA-KC 65 +DGE R+ C++C R YKH SLF H HK + + KC Sbjct: 810 EDGEERYQCDLCDRSYKHKKSLFAHLEWKHKSKKSYKC 923
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592795570|gb|GAXK01158998.1| (TSA: Calanus finmarchicus comp1498648_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 1.092e-2 Identity = 14/31 (45.16%), Postives = 20/31 (64.52%), Query Frame = 0 Query: 34 RFDCNMCRRRYKHHPSLFRHFRSAHKEQYAK 64 ++ CN+C RR+K+ P+L HFR H Y K Sbjct: 694 KYSCNLCPRRFKNEPALATHFRLIHNSGYLK 786
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592762304|gb|GAXK01192109.1| (TSA: Calanus finmarchicus comp40839_c3_seq13 transcribed RNA sequence) HSP 1 Score: 38.1206 bits (87), Expect = 2.162e-2 Identity = 13/40 (32.50%), Postives = 25/40 (62.50%), Query Frame = 0 Query: 19 LSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAH 58 +S++ +P+ GE +F CN C RR+ SL++H + ++ Sbjct: 166 ISALKQHMPVHTGEKKFKCNGCDRRFTQSSSLYKHMKKSN 285
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592762302|gb|GAXK01192111.1| (TSA: Calanus finmarchicus comp40839_c3_seq15 transcribed RNA sequence) HSP 1 Score: 37.7354 bits (86), Expect = 2.307e-2 Identity = 13/40 (32.50%), Postives = 25/40 (62.50%), Query Frame = 0 Query: 19 LSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAH 58 +S++ +P+ GE +F CN C RR+ SL++H + ++ Sbjct: 166 ISALKQHMPVHTGEKKFKCNGCDRRFTQSSSLYKHMKKSN 285
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592916237|gb|GAXK01042138.1| (TSA: Calanus finmarchicus comp1004986_c0_seq1 transcribed RNA sequence) HSP 1 Score: 37.3502 bits (85), Expect = 2.472e-2 Identity = 17/50 (34.00%), Postives = 27/50 (54.00%), Query Frame = 0 Query: 16 DSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKC 65 D T +++M + GE RF C C + + H L+RH ++ H+E KC Sbjct: 120 DRTFTNIMNTV----GE-RFQCKQCEKHFSHRSPLYRHVKTVHEEVRFKC 254 HSP 2 Score: 30.0314 bits (66), Expect = 7.735e+0 Identity = 12/27 (44.44%), Postives = 16/27 (59.26%), Query Frame = 0 Query: 32 EVRFDCNMCRRRYKHHPSLFRHFRSAH 58 EVRF CN+C + K +L H +S H Sbjct: 57 EVRFKCNLCDQELKRKSNLDAHIKSKH 137
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592910229|gb|GAXK01048146.1| (TSA: Calanus finmarchicus comp677378_c2_seq1 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 3.205e-2 Identity = 18/54 (33.33%), Postives = 29/54 (53.70%), Query Frame = 0 Query: 11 QKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAK 64 Q + DS L++ V P++ + CN+C RR+K +L HF+ H +Y K Sbjct: 10 QHFSGDSQLAANKV--PIKQSHIT--CNLCPRRFKKETALATHFKKIHNSEYLK 159
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592906707|gb|GAXK01051668.1| (TSA: Calanus finmarchicus comp28971_c0_seq30 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 4.078e-2 Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = 0 Query: 31 GEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKC 65 G+++F C++C RR+ LFRH +S H + C Sbjct: 81 GKIKFPCDLCPRRFLKKSHLFRHVKSVHDKIEFPC 185
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592906710|gb|GAXK01051665.1| (TSA: Calanus finmarchicus comp28971_c0_seq27 transcribed RNA sequence) HSP 1 Score: 36.5798 bits (83), Expect = 5.322e-2 Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = 0 Query: 31 GEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKC 65 G+++F C++C RR+ LFRH +S H + C Sbjct: 81 GKIKFPCDLCPRRFLKKSHLFRHVKSVHDKIEFPC 185
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592819720|gb|GAXK01134848.1| (TSA: Calanus finmarchicus comp4412515_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 7.000e-2 Identity = 17/50 (34.00%), Postives = 26/50 (52.00%), Query Frame = 0 Query: 7 RYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRS 56 ++ ++ T S LS M P+ E F+C C RR+ SL+RH +S Sbjct: 249 KFCGKEFTHMSDLSHHM---PVHTKEKNFECKGCARRFTQSSSLYRHMKS 389
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592877654|gb|GAXK01080092.1| (TSA: Calanus finmarchicus comp565903_c0_seq5 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 7.451e-2 Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 0 Query: 33 VRFDCNMCRRRYKHHPSLFRHFRSAH 58 V+F+C C + + + P+LFRH RS H Sbjct: 65 VKFECGQCPKSFSNQPNLFRHKRSVH 142
BLAST of EMLSAG00000011617 vs. L. salmonis peptides
Match: EMLSAP00000011617 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552:64646:-1 gene:EMLSAG00000011617 transcript:EMLSAT00000011617 description:"maker-LSalAtl2s802-snap-gene-0.20") HSP 1 Score: 514.612 bits (1324), Expect = 0.000e+0 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 Query: 1 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQEKQFILNDLERLLMNTNDLGGNEIPSATXNLIPRPICKFNFDDENALNEHVQDQHLDHWISRSQNL 248 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQEKQFILNDLERLLMNTNDLGGNEIPSATXNLIPRPICKFNFDDENALNEHVQDQHLDHWISRSQNL Sbjct: 1 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQEKQFILNDLERLLMNTNDLGGNEIPSATXNLIPRPICKFNFDDENALNEHVQDQHLDHWISRSQNL 248
BLAST of EMLSAG00000011617 vs. L. salmonis peptides
Match: EMLSAP00000011618 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392:84519:1 gene:EMLSAG00000011618 transcript:EMLSAT00000011618 description:"augustus_masked-LSalAtl2s802-processed-gene-0.2") HSP 1 Score: 137.117 bits (344), Expect = 1.747e-38 Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = 0 Query: 5 SVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKEN-SLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQ 182 SV Y D+K+ D +LSSMM++ LQ+G++RFDC++CR RYKHHPSLFRHF+ AHKEQY + ++LR +++ER K++G+ Y RRKN+KRN + + NKEN S LP+ + S+ T T+ VP LD K +LP S L C C QQ S+ L QH ECQ Sbjct: 6 SVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPN----------DSIPTQLSNLGTL-VP-LDQ---KYMLPVSNSHYYL-CTNCDQQFPSQQQLDQHGCECQ 168
BLAST of EMLSAG00000011617 vs. L. salmonis peptides
Match: EMLSAP00000005923 (pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246:791300:-1 gene:EMLSAG00000005923 transcript:EMLSAT00000005923 description:"maker-LSalAtl2s31-snap-gene-8.28") HSP 1 Score: 117.472 bits (293), Expect = 1.262e-31 Identity = 56/138 (40.58%), Postives = 91/138 (65.94%), Query Frame = 0 Query: 1 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQV 138 M KK + +LD K+ E + L+S+M+++ L++G+ RFDC++C RYKHH SLFRHF+SAH ++Y + ++LR ++++ER AA G Y RR+N KR +R ++ NKEN TT + ++ E S + + +T+ V Sbjct: 1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKEN--------TTSESVAKEAESPTKSTSKTSTVNV 130 The following BLAST results are available for this feature:
BLAST of EMLSAG00000011617 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000011617 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000011617 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000011617 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000011617 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000011617 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s802:54552..64646- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000011617-694383 ID=EMLSAG00000011617-694383|Name=EMLSAG00000011617|organism=Lepeophtheirus salmonis|type=gene|length=10095bp|location=Sequence derived from alignment at LSalAtl2s802:54552..64646- (Lepeophtheirus salmonis)back to top Add to Basket
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