EMLSAG00000011617, EMLSAG00000011617-694383 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592762301|gb|GAXK01192112.1| (TSA: Calanus finmarchicus comp40839_c3_seq16 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 8.301e-2 Identity = 15/41 (36.59%), Postives = 22/41 (53.66%), Query Frame = 0 Query: 19 LSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHK 59 LSS+ +P+ E F+CN+C Y SL+ H R H+ Sbjct: 149 LSSLKQHLPVHTKEKNFECNICNASYTRSSSLYSHMRQKHQ 271
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592762303|gb|GAXK01192110.1| (TSA: Calanus finmarchicus comp40839_c3_seq14 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 8.371e-2 Identity = 15/41 (36.59%), Postives = 22/41 (53.66%), Query Frame = 0 Query: 19 LSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHK 59 LSS+ +P+ E F+CN+C Y SL+ H R H+ Sbjct: 173 LSSLKQHLPVHTKEKNFECNICNASYTRSSSLYSHMRQKHQ 295
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592749694|gb|GAXK01204719.1| (TSA: Calanus finmarchicus comp5452106_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 8.870e-2 Identity = 27/106 (25.47%), Postives = 51/106 (48.11%), Query Frame = 0 Query: 146 MKQILPSSMVFMDLTCKICGQQLESEHALIQH-------IPECQ---EKQFILNDLERLLMNTND-LGGNEIPSATXNL-IPRPICKFNFDDENALNEHVQDQHLD 239 MK + +S F D C++CG+ L++E A ++H +P+C+ EK + +L R ++ +D G + T N +C +F + L+ H+ H + Sbjct: 7 MKTMQETS--FWDRVCRVCGRILDNETAKVEHQRKHDVEVPDCEVCDEKFSTIYNLHRHMLEQHDSFQGENVSQRTTNEPFVCLVCAKSFKYQRNLDTHISITHTE 318
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592874000|gb|GAXK01083562.1| (TSA: Calanus finmarchicus comp176443_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 9.085e-2 Identity = 16/37 (43.24%), Postives = 23/37 (62.16%), Query Frame = 0 Query: 37 CNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQ 73 C +C ++YKH PSL H H+E+Y LSL+ + Q Sbjct: 480 CELCGKQYKHKPSLQVHISQKHREEY---LSLKKQEQ 581
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592877655|gb|GAXK01080091.1| (TSA: Calanus finmarchicus comp565903_c0_seq4 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 1.020e-1 Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 0 Query: 33 VRFDCNMCRRRYKHHPSLFRHFRSAH 58 V+F+C C + + + P+LFRH RS H Sbjct: 65 VKFECGQCPKSFSNQPNLFRHKRSVH 142
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592877659|gb|GAXK01080088.1| (TSA: Calanus finmarchicus comp565903_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 1.183e-1 Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 0 Query: 33 VRFDCNMCRRRYKHHPSLFRHFRSAH 58 V+F+C C + + + P+LFRH RS H Sbjct: 65 VKFECGQCPKSFSNQPNLFRHKRSVH 142
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592789951|gb|GAXK01164617.1| (TSA: Calanus finmarchicus comp599346_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 1.340e-1 Identity = 13/31 (41.94%), Postives = 20/31 (64.52%), Query Frame = 0 Query: 35 FDCNMCRRRYKHHPSLFRHFRSAHKEQYAKC 65 F C +C +R+KH+ SL +H + HKE+ C Sbjct: 206 FPCTLCDKRFKHNNSLSKHINAVHKEKLFTC 298
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592877656|gb|GAXK01080090.1| (TSA: Calanus finmarchicus comp565903_c0_seq3 transcribed RNA sequence) HSP 1 Score: 34.6538 bits (78), Expect = 1.418e-1 Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 0 Query: 33 VRFDCNMCRRRYKHHPSLFRHFRSAH 58 V+F+C C + + + P+LFRH RS H Sbjct: 65 VKFECGQCPKSFSNQPNLFRHKRSVH 142
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592877657|gb|GAXK01080089.1| (TSA: Calanus finmarchicus comp565903_c0_seq2 transcribed RNA sequence) HSP 1 Score: 34.6538 bits (78), Expect = 1.614e-1 Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 0 Query: 33 VRFDCNMCRRRYKHHPSLFRHFRSAH 58 V+F+C C + + + P+LFRH RS H Sbjct: 65 VKFECGQCPKSFSNQPNLFRHKRSVH 142
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592780635|gb|GAXK01173933.1| (TSA: Calanus finmarchicus comp824869_c0_seq3 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 2.591e-1 Identity = 15/32 (46.88%), Postives = 21/32 (65.62%), Query Frame = 0 Query: 28 LQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHK 59 + DG +++DCN C +Y H SL H RSAH+ Sbjct: 306 VHDG-IKYDCNKCPAQYTHGKSLRNHIRSAHE 398
BLAST of EMLSAG00000011617 vs. L. salmonis peptides
Match: EMLSAP00000011617 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552:64646:-1 gene:EMLSAG00000011617 transcript:EMLSAT00000011617 description:"maker-LSalAtl2s802-snap-gene-0.20") HSP 1 Score: 514.612 bits (1324), Expect = 0.000e+0 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 Query: 1 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQEKQFILNDLERLLMNTNDLGGNEIPSATXNLIPRPICKFNFDDENALNEHVQDQHLDHWISRSQNL 248 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQEKQFILNDLERLLMNTNDLGGNEIPSATXNLIPRPICKFNFDDENALNEHVQDQHLDHWISRSQNL Sbjct: 1 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQEKQFILNDLERLLMNTNDLGGNEIPSATXNLIPRPICKFNFDDENALNEHVQDQHLDHWISRSQNL 248
BLAST of EMLSAG00000011617 vs. L. salmonis peptides
Match: EMLSAP00000011618 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392:84519:1 gene:EMLSAG00000011618 transcript:EMLSAT00000011618 description:"augustus_masked-LSalAtl2s802-processed-gene-0.2") HSP 1 Score: 137.117 bits (344), Expect = 1.747e-38 Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = 0 Query: 5 SVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKEN-SLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQ 182 SV Y D+K+ D +LSSMM++ LQ+G++RFDC++CR RYKHHPSLFRHF+ AHKEQY + ++LR +++ER K++G+ Y RRKN+KRN + + NKEN S LP+ + S+ T T+ VP LD K +LP S L C C QQ S+ L QH ECQ Sbjct: 6 SVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPN----------DSIPTQLSNLGTL-VP-LDQ---KYMLPVSNSHYYL-CTNCDQQFPSQQQLDQHGCECQ 168
BLAST of EMLSAG00000011617 vs. L. salmonis peptides
Match: EMLSAP00000005923 (pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246:791300:-1 gene:EMLSAG00000005923 transcript:EMLSAT00000005923 description:"maker-LSalAtl2s31-snap-gene-8.28") HSP 1 Score: 117.472 bits (293), Expect = 1.262e-31 Identity = 56/138 (40.58%), Postives = 91/138 (65.94%), Query Frame = 0 Query: 1 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQV 138 M KK + +LD K+ E + L+S+M+++ L++G+ RFDC++C RYKHH SLFRHF+SAH ++Y + ++LR ++++ER AA G Y RR+N KR +R ++ NKEN TT + ++ E S + + +T+ V Sbjct: 1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKEN--------TTSESVAKEAESPTKSTSKTSTVNV 130 The following BLAST results are available for this feature:
BLAST of EMLSAG00000011617 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000011617 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000011617 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000011617 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000011617 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000011617 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s802:54552..64646- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000011617-694383 ID=EMLSAG00000011617-694383|Name=EMLSAG00000011617|organism=Lepeophtheirus salmonis|type=gene|length=10095bp|location=Sequence derived from alignment at LSalAtl2s802:54552..64646- (Lepeophtheirus salmonis)back to top Add to Basket
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