EMLSAG00000011617, EMLSAG00000011617-694383 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592837614|gb|GAXK01119930.1| (TSA: Calanus finmarchicus comp352934_c1_seq1 transcribed RNA sequence) HSP 1 Score: 34.6538 bits (78), Expect = 2.691e-1 Identity = 14/34 (41.18%), Postives = 20/34 (58.82%), Query Frame = 0 Query: 28 LQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQ 61 + D E F C++C RYK P L H+ +HKE+ Sbjct: 638 IPDSEKPFACDLCLARYKTRPGLTYHYNHSHKEK 739
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592873999|gb|GAXK01083563.1| (TSA: Calanus finmarchicus comp176443_c0_seq2 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 2.994e-1 Identity = 16/37 (43.24%), Postives = 23/37 (62.16%), Query Frame = 0 Query: 37 CNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQ 73 C +C ++YKH PSL H H+E+Y LSL+ + Q Sbjct: 226 CELCGKQYKHKPSLQVHISQKHREEY---LSLKKQEQ 327
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592762305|gb|GAXK01192108.1| (TSA: Calanus finmarchicus comp40839_c3_seq12 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 4.380e-1 Identity = 10/37 (27.03%), Postives = 24/37 (64.86%), Query Frame = 0 Query: 20 SSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRS 56 S++ +P+ GE +++C+ C +R+ SL++H ++ Sbjct: 771 STLKQHMPVHTGEKKYECDNCHKRFTQSSSLYKHIKA 881 HSP 2 Score: 33.4982 bits (75), Expect = 6.410e-1 Identity = 15/45 (33.33%), Postives = 22/45 (48.89%), Query Frame = 0 Query: 15 EDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHK 59 E + S M +P+ E F+CN+C Y SL+ H R H+ Sbjct: 149 EFPSYSKMNQHLPVHTKEKNFECNICNASYTRSSSLYSHMRQKHQ 283
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592762300|gb|GAXK01192113.1| (TSA: Calanus finmarchicus comp40839_c3_seq17 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 4.949e-1 Identity = 10/37 (27.03%), Postives = 24/37 (64.86%), Query Frame = 0 Query: 20 SSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRS 56 S++ +P+ GE +++C+ C +R+ SL++H ++ Sbjct: 795 STLKQHMPVHTGEKKYECDNCHKRFTQSSSLYKHIKA 905 HSP 2 Score: 33.4982 bits (75), Expect = 5.558e-1 Identity = 15/45 (33.33%), Postives = 22/45 (48.89%), Query Frame = 0 Query: 15 EDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHK 59 E + S M +P+ E F+CN+C Y SL+ H R H+ Sbjct: 173 EFPSYSKMNQHLPVHTKEKNFECNICNASYTRSSSLYSHMRQKHQ 307
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Match: gi|592941547|gb|GAXK01017006.1| (TSA: Calanus finmarchicus comp72331_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 5.528e-1 Identity = 16/52 (30.77%), Postives = 28/52 (53.85%), Query Frame = 0 Query: 17 STLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYA--KCL 66 S +++ V + GE F C +C R++ L++HFR +H + A KC+ Sbjct: 3131 SWKTNLSVHLRTHSGERPFSCVLCLNRFRQKAHLYKHFRCSHGHKVAPYKCM 3286
BLAST of EMLSAG00000011617 vs. L. salmonis peptides
Match: EMLSAP00000011617 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552:64646:-1 gene:EMLSAG00000011617 transcript:EMLSAT00000011617 description:"maker-LSalAtl2s802-snap-gene-0.20") HSP 1 Score: 514.612 bits (1324), Expect = 0.000e+0 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 Query: 1 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQEKQFILNDLERLLMNTNDLGGNEIPSATXNLIPRPICKFNFDDENALNEHVQDQHLDHWISRSQNL 248 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQEKQFILNDLERLLMNTNDLGGNEIPSATXNLIPRPICKFNFDDENALNEHVQDQHLDHWISRSQNL Sbjct: 1 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQEKQFILNDLERLLMNTNDLGGNEIPSATXNLIPRPICKFNFDDENALNEHVQDQHLDHWISRSQNL 248
BLAST of EMLSAG00000011617 vs. L. salmonis peptides
Match: EMLSAP00000011618 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392:84519:1 gene:EMLSAG00000011618 transcript:EMLSAT00000011618 description:"augustus_masked-LSalAtl2s802-processed-gene-0.2") HSP 1 Score: 137.117 bits (344), Expect = 1.747e-38 Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = 0 Query: 5 SVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKEN-SLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQ 182 SV Y D+K+ D +LSSMM++ LQ+G++RFDC++CR RYKHHPSLFRHF+ AHKEQY + ++LR +++ER K++G+ Y RRKN+KRN + + NKEN S LP+ + S+ T T+ VP LD K +LP S L C C QQ S+ L QH ECQ Sbjct: 6 SVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPN----------DSIPTQLSNLGTL-VP-LDQ---KYMLPVSNSHYYL-CTNCDQQFPSQQQLDQHGCECQ 168
BLAST of EMLSAG00000011617 vs. L. salmonis peptides
Match: EMLSAP00000005923 (pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246:791300:-1 gene:EMLSAG00000005923 transcript:EMLSAT00000005923 description:"maker-LSalAtl2s31-snap-gene-8.28") HSP 1 Score: 117.472 bits (293), Expect = 1.262e-31 Identity = 56/138 (40.58%), Postives = 91/138 (65.94%), Query Frame = 0 Query: 1 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQV 138 M KK + +LD K+ E + L+S+M+++ L++G+ RFDC++C RYKHH SLFRHF+SAH ++Y + ++LR ++++ER AA G Y RR+N KR +R ++ NKEN TT + ++ E S + + +T+ V Sbjct: 1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKEN--------TTSESVAKEAESPTKSTSKTSTVNV 130 The following BLAST results are available for this feature:
BLAST of EMLSAG00000011617 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000011617 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000011617 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000011617 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000011617 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000011617 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000011617 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s802:54552..64646- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000011617-694383 ID=EMLSAG00000011617-694383|Name=EMLSAG00000011617|organism=Lepeophtheirus salmonis|type=gene|length=10095bp|location=Sequence derived from alignment at LSalAtl2s802:54552..64646- (Lepeophtheirus salmonis)back to top Add to Basket
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