EMLSAG00000012048, EMLSAG00000012048-694814 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012048
Unique NameEMLSAG00000012048-694814
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000012048 vs. C. finmarchicus
Match: gi|592886826|gb|GAXK01071549.1| (TSA: Calanus finmarchicus comp459200_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 2.021e-1
Identity = 22/69 (31.88%), Postives = 28/69 (40.58%), Query Frame = 0 
Query:   14 PLANDPFTHTSFKIEHGDGQVSDFDTSISKTEVKFHQKGIP-------GEVLLEDRFYPHVEPFLAFRK 75
            P    PF       E G G    +D+++SK        G P       G  + E   +PHV PFLAF K
Sbjct:  161 PAVESPFLAIKINREQG-GIKYGYDSAVSKQAQNLVVSGPPAEDIGFSGSAIYEQPAFPHVPPFLAFSK 364
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BLAST of EMLSAG00000012048 vs. C. finmarchicus
Match: gi|592818224|gb|GAXK01136344.1| (TSA: Calanus finmarchicus comp1168144_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.111e+0
Identity = 18/63 (28.57%), Postives = 27/63 (42.86%), Query Frame = 0 
Query:   10 VQCYPLANDPFTHTSFKIEHGDGQVSDFDTSISKTEVKFHQKGIPGEVLLEDRFYPHVEPFLA 72
             +C  L  D  +  +  + HG       D    +TE     K  PGE    +RF+PH+E +L 
Sbjct:   52 AECVWLGEDDLSERTESVWHG------VDDLSERTE-----KSWPGEDDQSERFWPHLEDWLG 207
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BLAST of EMLSAG00000012048 vs. C. finmarchicus
Match: gi|592818225|gb|GAXK01136343.1| (TSA: Calanus finmarchicus comp1168144_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.112e+0
Identity = 18/63 (28.57%), Postives = 27/63 (42.86%), Query Frame = 0 
Query:   10 VQCYPLANDPFTHTSFKIEHGDGQVSDFDTSISKTEVKFHQKGIPGEVLLEDRFYPHVEPFLA 72
             +C  L  D  +  +  + HG       D    +TE     K  PGE    +RF+PH+E +L 
Sbjct:   52 AECVWLGEDDLSERTESVWHG------VDDLSERTE-----KSWPGEDDQSERFWPHLEDWLG 207
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BLAST of EMLSAG00000012048 vs. C. finmarchicus
Match: gi|592818226|gb|GAXK01136342.1| (TSA: Calanus finmarchicus comp1168144_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.126e+0
Identity = 18/63 (28.57%), Postives = 27/63 (42.86%), Query Frame = 0 
Query:   10 VQCYPLANDPFTHTSFKIEHGDGQVSDFDTSISKTEVKFHQKGIPGEVLLEDRFYPHVEPFLA 72
             +C  L  D  +  +  + HG       D    +TE     K  PGE    +RF+PH+E +L 
Sbjct:   52 AECVWLGEDDLSERTESVWHG------VDDLSERTE-----KSWPGEDDQSERFWPHLEDWLG 207
[Close]
BLAST of EMLSAG00000012048 vs. C. finmarchicus
Match: gi|592818227|gb|GAXK01136341.1| (TSA: Calanus finmarchicus comp1168144_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.137e+0
Identity = 18/63 (28.57%), Postives = 27/63 (42.86%), Query Frame = 0 
Query:   10 VQCYPLANDPFTHTSFKIEHGDGQVSDFDTSISKTEVKFHQKGIPGEVLLEDRFYPHVEPFLA 72
             +C  L  D  +  +  + HG       D    +TE     K  PGE    +RF+PH+E +L 
Sbjct:   52 AECVWLGEDDLSERTESVWHG------VDDLSERTE-----KSWPGEDDQSERFWPHLEDWLG 207
[Close]
BLAST of EMLSAG00000012048 vs. C. finmarchicus
Match: gi|592818228|gb|GAXK01136340.1| (TSA: Calanus finmarchicus comp1168144_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.149e+0
Identity = 18/63 (28.57%), Postives = 27/63 (42.86%), Query Frame = 0 
Query:   10 VQCYPLANDPFTHTSFKIEHGDGQVSDFDTSISKTEVKFHQKGIPGEVLLEDRFYPHVEPFLA 72
             +C  L  D  +  +  + HG       D    +TE     K  PGE    +RF+PH+E +L 
Sbjct:   52 AECVWLGEDDLSERTESVWHG------VDDLSERTE-----KSWPGEDDQSERFWPHLEDWLG 207
[Close]
BLAST of EMLSAG00000012048 vs. C. finmarchicus
Match: gi|592903259|gb|GAXK01055116.1| (TSA: Calanus finmarchicus comp85756_c1_seq5 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 2.376e+0
Identity = 13/42 (30.95%), Postives = 23/42 (54.76%), Query Frame = 0 
Query:   29 HGDGQVSDFDTSISKTEVKFH-QKGIPGEVLLEDRFYPHVEP 69
             G GQ   ++ S+    ++ H  + + G  +L+DR  PH+EP
Sbjct: 1167 QGAGQAGQWEESLQTDRLRQHLPQAVAGRAVLQDRAGPHMEP 1292
[Close]
BLAST of EMLSAG00000012048 vs. C. finmarchicus
Match: gi|592903260|gb|GAXK01055115.1| (TSA: Calanus finmarchicus comp85756_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 2.379e+0
Identity = 13/42 (30.95%), Postives = 23/42 (54.76%), Query Frame = 0 
Query:   29 HGDGQVSDFDTSISKTEVKFH-QKGIPGEVLLEDRFYPHVEP 69
             G GQ   ++ S+    ++ H  + + G  +L+DR  PH+EP
Sbjct: 1186 QGAGQAGQWEESLQTDRLRQHLPQAVAGRAVLQDRAGPHMEP 1311
[Close]
BLAST of EMLSAG00000012048 vs. C. finmarchicus
Match: gi|592903261|gb|GAXK01055114.1| (TSA: Calanus finmarchicus comp85756_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 2.380e+0
Identity = 13/42 (30.95%), Postives = 23/42 (54.76%), Query Frame = 0 
Query:   29 HGDGQVSDFDTSISKTEVKFH-QKGIPGEVLLEDRFYPHVEP 69
             G GQ   ++ S+    ++ H  + + G  +L+DR  PH+EP
Sbjct: 1167 QGAGQAGQWEESLQTDRLRQHLPQAVAGRAVLQDRAGPHMEP 1292
[Close]
BLAST of EMLSAG00000012048 vs. C. finmarchicus
Match: gi|592903262|gb|GAXK01055113.1| (TSA: Calanus finmarchicus comp85756_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 2.382e+0
Identity = 13/42 (30.95%), Postives = 23/42 (54.76%), Query Frame = 0 
Query:   29 HGDGQVSDFDTSISKTEVKFH-QKGIPGEVLLEDRFYPHVEP 69
             G GQ   ++ S+    ++ H  + + G  +L+DR  PH+EP
Sbjct: 1186 QGAGQAGQWEESLQTDRLRQHLPQAVAGRAVLQDRAGPHMEP 1311
[Close]
BLAST of EMLSAG00000012048 vs. L. salmonis peptides
Match: EMLSAP00000012048 (pep:novel supercontig:LSalAtl2s:LSalAtl2s85:1230541:1233730:-1 gene:EMLSAG00000012048 transcript:EMLSAT00000012048 description:"augustus_masked-LSalAtl2s85-processed-gene-11.1")

HSP 1 Score: 269.24 bits (687), Expect = 1.364e-93
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 
Query:    1 MLLTDNEMEVQCYPLANDPFTHTSFKIEHGDGQVSDFDTSISKTEVKFHQKGIPGEVLLEDRFYPHVEPFLAFRKVNLEDFPSSSSSYLQKSQPVKRRVNIQPQKRIENENDEEEVKTSFESFEDSLTVPN 131
            MLLTDNEMEVQCYPLANDPFTHTSFKIEHGDGQVSDFDTSISKTEVKFHQKGIPGEVLLEDRFYPHVEPFLAFRKVNLEDFPSSSSSYLQKSQPVKRRVNIQPQKRIENENDEEEVKTSFESFEDSLTVPN
Sbjct:    1 MLLTDNEMEVQCYPLANDPFTHTSFKIEHGDGQVSDFDTSISKTEVKFHQKGIPGEVLLEDRFYPHVEPFLAFRKVNLEDFPSSSSSYLQKSQPVKRRVNIQPQKRIENENDEEEVKTSFESFEDSLTVPN 131
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012048 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012048 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 10
Match NameE-valueIdentityDescription
gi|592886826|gb|GAXK01071549.1|2.021e-131.88TSA: Calanus finmarchicus comp459200_c1_seq1 trans... [more]
gi|592818224|gb|GAXK01136344.1|1.111e+028.57TSA: Calanus finmarchicus comp1168144_c0_seq5 tran... [more]
gi|592818225|gb|GAXK01136343.1|1.112e+028.57TSA: Calanus finmarchicus comp1168144_c0_seq4 tran... [more]
gi|592818226|gb|GAXK01136342.1|1.126e+028.57TSA: Calanus finmarchicus comp1168144_c0_seq3 tran... [more]
gi|592818227|gb|GAXK01136341.1|1.137e+028.57TSA: Calanus finmarchicus comp1168144_c0_seq2 tran... [more]
gi|592818228|gb|GAXK01136340.1|1.149e+028.57TSA: Calanus finmarchicus comp1168144_c0_seq1 tran... [more]
gi|592903259|gb|GAXK01055116.1|2.376e+030.95TSA: Calanus finmarchicus comp85756_c1_seq5 transc... [more]
gi|592903260|gb|GAXK01055115.1|2.379e+030.95TSA: Calanus finmarchicus comp85756_c1_seq4 transc... [more]
gi|592903261|gb|GAXK01055114.1|2.380e+030.95TSA: Calanus finmarchicus comp85756_c1_seq3 transc... [more]
gi|592903262|gb|GAXK01055113.1|2.382e+030.95TSA: Calanus finmarchicus comp85756_c1_seq2 transc... [more]
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BLAST of EMLSAG00000012048 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000120481.364e-93100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s85:123054... [more]
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BLAST of EMLSAG00000012048 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012048 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012048 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012048 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s85supercontigLSalAtl2s85:1230541..1233730 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s85-processed-gene-11.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012048 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012048EMLSAT00000012048-707895Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s85:1230541..1233730-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012048-694814 ID=EMLSAG00000012048-694814|Name=EMLSAG00000012048|organism=Lepeophtheirus salmonis|type=gene|length=3190bp|location=Sequence derived from alignment at LSalAtl2s85:1230541..1233730- (Lepeophtheirus salmonis)
ATGTTATTGACTGATAATGAAATGGAAGGTCAGTTATTTGATAAGCCTAA
CATTATTCGTTTGCCAAAGAACGAATGAATACATTTTTATATGAAAGCGC
TTATATATGATTCATCATTGTATAAAAAATCAAGTTTTACAAGAATAGAA
ACCTTTGTTTTGATTAATTTAAACAAAATTGTGAACTATTGCCGAGTTTT
TGAATGTCAAAATGGTACTAACAAATAAAATTATTTAATTTTTTACTGTA
TATCAAAAATAATTATATTTCAGATCGTAATATGTATTAAAATAGTTATT
ACATCCTTGGAAGATCTTATTTTTTCTTAATAAACAGTTAAATTAACTAT
AACAATTGCAAGAATAAGATATTGACAATGCCGTTGCTTCCGGTTTATGA
TACAATTTGTGACGTCATTAAAATTTTTACATTTGAATACAAGAACAAAA
TTTTTTTTTTATGTAATATCTTGAGATATGAGTACCAGTTTTTAAATGCT
TGATTCTGACCCAAAATTTTCATAAATATACAACTTTTTTTAGTACTGGC
TGGKCAAAAGTTGGCGAAAGGGCGCCAAATCCACTACAAGTTAAAAAAAT
TCATAGTTATTTTTTTTTGTAGACTTAAGAGTTCCGTTCAGGAACAAACT
GAACTATACGTCAAGGTACTACTGAATAAAGAAATGGACCCCTTGATGTG
TTTAATTCTCTTTTTCTATTCGTAAAGGAGAAAACCATAATATATCTACA
TGCCTTATGTACTTTTAAAAAACAGGTTGACTCAAAAGAAATTAATTAAC
CGTAAAATATCCTTTGTTTACCGTAACATTGGTTATTAATCCNNNNNNNN
NTGGTTATTAATCCAGAAATAAATATTCTGATGATTTTTCTTTGATTTAT
GACTAGAATAAGTATATTATTATATCTTCAAGGACTTAACACGAACTGCA
TCAACCAGTAGGTGGGTAAAAAATACGGGTATACAAAAAAGGKTATAAAA
GAAGAAAATATCACCCTCAATCATCTAGTATTATCAAAGACCTAGGTGTG
TAAGAGGGAAACTACTTATATATCATATAAAAACTGTAGCAGAATGAAGT
CCTTGGTAAGTTATTTCAATAAAAAAATACTGGTTATTATTTTTTTATTC
ATTTTTATCTTACTATTAGTTGATAAATATTGATAAATTTCTCTGTAAGA
GAAATGAATTGAAACTTTCTTGTAATGATTATCTTCAGGAATCAGAGGAG
CTTTATTTATTTATTGTTACTCTGATTGTAGAAAATTTATTATAAAATTC
AATACACGAGTGTTTCAATTATATCTCCCATTTCACAATTAATATTCTCT
AAATAAAGGTGGAAATTGAATGGAAACAATTGTGTTATAAATATCACAAG
GAATTAAATTTATCAATTTTAATTCAAAGTTATTTTCATTTGTTTCGATG
TTCATTGCACAATCAGGGGCGTACGCAGGGGGCCGGTTGAATGGGCTGTA
GCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTGCAATTTTTTTTACAAAAAGTTTAGCATTTG
AGTTTTTTTTTCCTATAAATTTAATTTTTTATAAATAGGTGGGGATTTTT
GTAATTGTTTTCCAAAAAATTTTGGATTTTTTGAATTTTTTTTTCAAAAA
GTTTAATTTTTGTAAAAAAATTATGGATTTTTTTGAATTTTTTTTAAGAA
TTTATTATATTWAATTTTTTTTCTTCAGAATTTTAATTGTCAGAAAATAT
TTATGAATTTCTTTTTTTTCCAAATAATTTAATTTTTTGTGAATAGCAAT
GGATTTTAAATATTTAATTTTTTGATTTTTTTTTTTTTCTAAAAATCATA
TAATCATGTGTACGGGCCTGACAATTGTTTTCATTCAGCTTTAGTATTTC
ACAACTATTCTAGAAATATAAATTTAAGAAAAAATAGCCTCTAGGCTGTT
AAAAAAAAGAAGGAGACAAAAAAGTATATTTAACCATATGATATATAGAA
TGTTGTTTGTGATATCTATTCCTTCATTTGTATTTTAGACCTTGGGATCA
TTGTTTTTAACTATATCTCTAGTTCAATGCTATCCCCTTGCCAACGATCC
CTTTACTCATACAAGTTTTAAAATTGAGCATGGAGATGGGCAAGTGAGTG
ATTTCGATACATCCATTTCAAAGACTGAGGTAAAATTCCATCAGAAGGGA
ATTCCTGGAGAAGTTTTACTCGAGGATCGATTTTATCCACATGTGGAACC
ATTTTTGGCGTTTAGAAAAGTTAACTTAGAAGATTTTCCATCAAGTTCTT
CTTCCTATCTTCAAAAGTCACAACCTGTTAAAAGAAGAGTTAACATTCAA
CCACAAAAACGGATAGAAAATGAAAATGATGAAGAGGAAGTGAAGACTAG
TTTTGAGTCATTTGAGGATTCATTGACTGTTCCAAATTGA
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