EMLSAG00000012717, EMLSAG00000012717-695483 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000012717 vs. C. finmarchicus
Match: gi|592853947|gb|GAXK01103597.1| (TSA: Calanus finmarchicus comp167879_c0_seq2 transcribed RNA sequence) HSP 1 Score: 41.5874 bits (96), Expect = 7.160e-3 Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 0 Query: 349 SHRSRPHNSTH---ISDHLQEKKEGKKSAIAETIAMMSKMKMEDKE 391 S R+R ST DH EK GK +AI ET AMM+KM++E+KE Sbjct: 1313 SQRARGAPSTRGRPSVDHTHEKAAGKNAAIEETKAMMAKMRLEEKE 1450 HSP 2 Score: 33.4982 bits (75), Expect = 2.227e+0 Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 0 Query: 201 RKDDLIIGSWDEECKERG 218 KDDLIIGSW++EC + G Sbjct: 959 EKDDLIIGSWNDECDKEG 1012
BLAST of EMLSAG00000012717 vs. C. finmarchicus
Match: gi|592853948|gb|GAXK01103596.1| (TSA: Calanus finmarchicus comp167879_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.5874 bits (96), Expect = 7.162e-3 Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 0 Query: 349 SHRSRPHNSTH---ISDHLQEKKEGKKSAIAETIAMMSKMKMEDKE 391 S R+R ST DH EK GK +AI ET AMM+KM++E+KE Sbjct: 1313 SQRARGAPSTRGRPSVDHTHEKAAGKNAAIEETKAMMAKMRLEEKE 1450 HSP 2 Score: 33.4982 bits (75), Expect = 2.227e+0 Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 0 Query: 201 RKDDLIIGSWDEECKERG 218 KDDLIIGSW++EC + G Sbjct: 959 EKDDLIIGSWNDECDKEG 1012
BLAST of EMLSAG00000012717 vs. C. finmarchicus
Match: gi|592947179|gb|GAXK01011374.1| (TSA: Calanus finmarchicus comp22814_c4_seq11 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 5.938e-2 Identity = 17/31 (54.84%), Postives = 25/31 (80.65%), Query Frame = 0 Query: 361 SDHLQEKKEGKKSAIAETIAMMSKMKMEDKE 391 ++ +QEK +GK +AI ET AMM KM++E+KE Sbjct: 5011 AEIIQEKAQGKNAAIEETKAMMLKMRLEEKE 5103
BLAST of EMLSAG00000012717 vs. C. finmarchicus
Match: gi|592947180|gb|GAXK01011373.1| (TSA: Calanus finmarchicus comp22814_c4_seq10 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 5.939e-2 Identity = 17/31 (54.84%), Postives = 25/31 (80.65%), Query Frame = 0 Query: 361 SDHLQEKKEGKKSAIAETIAMMSKMKMEDKE 391 ++ +QEK +GK +AI ET AMM KM++E+KE Sbjct: 5028 AEIIQEKAQGKNAAIEETKAMMLKMRLEEKE 5120
BLAST of EMLSAG00000012717 vs. C. finmarchicus
Match: gi|592947181|gb|GAXK01011372.1| (TSA: Calanus finmarchicus comp22814_c4_seq9 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 5.941e-2 Identity = 17/31 (54.84%), Postives = 25/31 (80.65%), Query Frame = 0 Query: 361 SDHLQEKKEGKKSAIAETIAMMSKMKMEDKE 391 ++ +QEK +GK +AI ET AMM KM++E+KE Sbjct: 5056 AEIIQEKAQGKNAAIEETKAMMLKMRLEEKE 5148
BLAST of EMLSAG00000012717 vs. C. finmarchicus
Match: gi|592947182|gb|GAXK01011371.1| (TSA: Calanus finmarchicus comp22814_c4_seq8 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 5.941e-2 Identity = 17/31 (54.84%), Postives = 25/31 (80.65%), Query Frame = 0 Query: 361 SDHLQEKKEGKKSAIAETIAMMSKMKMEDKE 391 ++ +QEK +GK +AI ET AMM KM++E+KE Sbjct: 5061 AEIIQEKAQGKNAAIEETKAMMLKMRLEEKE 5153
BLAST of EMLSAG00000012717 vs. C. finmarchicus
Match: gi|592947183|gb|GAXK01011370.1| (TSA: Calanus finmarchicus comp22814_c4_seq7 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 5.956e-2 Identity = 17/31 (54.84%), Postives = 25/31 (80.65%), Query Frame = 0 Query: 361 SDHLQEKKEGKKSAIAETIAMMSKMKMEDKE 391 ++ +QEK +GK +AI ET AMM KM++E+KE Sbjct: 5327 AEIIQEKAQGKNAAIEETKAMMLKMRLEEKE 5419
BLAST of EMLSAG00000012717 vs. C. finmarchicus
Match: gi|592947184|gb|GAXK01011369.1| (TSA: Calanus finmarchicus comp22814_c4_seq6 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 5.956e-2 Identity = 17/31 (54.84%), Postives = 25/31 (80.65%), Query Frame = 0 Query: 361 SDHLQEKKEGKKSAIAETIAMMSKMKMEDKE 391 ++ +QEK +GK +AI ET AMM KM++E+KE Sbjct: 5332 AEIIQEKAQGKNAAIEETKAMMLKMRLEEKE 5424
BLAST of EMLSAG00000012717 vs. C. finmarchicus
Match: gi|592947185|gb|GAXK01011368.1| (TSA: Calanus finmarchicus comp22814_c4_seq5 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 5.957e-2 Identity = 17/31 (54.84%), Postives = 25/31 (80.65%), Query Frame = 0 Query: 361 SDHLQEKKEGKKSAIAETIAMMSKMKMEDKE 391 ++ +QEK +GK +AI ET AMM KM++E+KE Sbjct: 5348 AEIIQEKAQGKNAAIEETKAMMLKMRLEEKE 5440
BLAST of EMLSAG00000012717 vs. C. finmarchicus
Match: gi|592947186|gb|GAXK01011367.1| (TSA: Calanus finmarchicus comp22814_c4_seq4 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 5.977e-2 Identity = 17/31 (54.84%), Postives = 25/31 (80.65%), Query Frame = 0 Query: 361 SDHLQEKKEGKKSAIAETIAMMSKMKMEDKE 391 ++ +QEK +GK +AI ET AMM KM++E+KE Sbjct: 5760 AEIIQEKAQGKNAAIEETKAMMLKMRLEEKE 5852
BLAST of EMLSAG00000012717 vs. L. salmonis peptides
Match: EMLSAP00000012717 (pep:novel supercontig:LSalAtl2s:LSalAtl2s965:45558:55453:-1 gene:EMLSAG00000012717 transcript:EMLSAT00000012717 description:"maker-LSalAtl2s965-snap-gene-0.12") HSP 1 Score: 1061.21 bits (2743), Expect = 0.000e+0 Identity = 518/518 (100.00%), Postives = 518/518 (100.00%), Query Frame = 0 Query: 1 MEAAGMGPAPLLAPQQSGLKVMLPGGGVRNSPHYLLLGGAGPGGLDGSGGLSPNGGVPSSLEMSERSWKNVVPGNVLLGPPMLSPDVKNVEEGFQGPLGEFIPLSRVESYPGVASVASVASVGSGNSSQGGNGFAVARSGIHELNGYSPLSPYSPANISCSQAQSSGMGNMGNMLQTMPPRPRPEGGQEQWNVFESGNEIRKDDLIIGSWDEECKERGKPALSQQYHYQQHHSNQQPMNILPPHYNQQFLMQHKMVEDCNGFDDSSNYAAWRNHTPCGRGWNSSSLNNTLNSLSTTHHQSSTRPALNGWQQPFSSNAGRSAARGRGILRGNRSRGSRSNVKFGTENDSSHRSRPHNSTHISDHLQEKKEGKKSAIAETIAMMSKMKMEDKERQVQKQSPDNDSSNSVNVLTENCSNIQYKNSHSRGSRYIKGRGYNCVGQNHINPMNNFLVPIRGIEGFLPFHQSIYTGSYPSNLYRTPFLPPVIPGSNNRGYRNCNNLYRGPPPPIMIAFKQNNISN 518 MEAAGMGPAPLLAPQQSGLKVMLPGGGVRNSPHYLLLGGAGPGGLDGSGGLSPNGGVPSSLEMSERSWKNVVPGNVLLGPPMLSPDVKNVEEGFQGPLGEFIPLSRVESYPGVASVASVASVGSGNSSQGGNGFAVARSGIHELNGYSPLSPYSPANISCSQAQSSGMGNMGNMLQTMPPRPRPEGGQEQWNVFESGNEIRKDDLIIGSWDEECKERGKPALSQQYHYQQHHSNQQPMNILPPHYNQQFLMQHKMVEDCNGFDDSSNYAAWRNHTPCGRGWNSSSLNNTLNSLSTTHHQSSTRPALNGWQQPFSSNAGRSAARGRGILRGNRSRGSRSNVKFGTENDSSHRSRPHNSTHISDHLQEKKEGKKSAIAETIAMMSKMKMEDKERQVQKQSPDNDSSNSVNVLTENCSNIQYKNSHSRGSRYIKGRGYNCVGQNHINPMNNFLVPIRGIEGFLPFHQSIYTGSYPSNLYRTPFLPPVIPGSNNRGYRNCNNLYRGPPPPIMIAFKQNNISN Sbjct: 1 MEAAGMGPAPLLAPQQSGLKVMLPGGGVRNSPHYLLLGGAGPGGLDGSGGLSPNGGVPSSLEMSERSWKNVVPGNVLLGPPMLSPDVKNVEEGFQGPLGEFIPLSRVESYPGVASVASVASVGSGNSSQGGNGFAVARSGIHELNGYSPLSPYSPANISCSQAQSSGMGNMGNMLQTMPPRPRPEGGQEQWNVFESGNEIRKDDLIIGSWDEECKERGKPALSQQYHYQQHHSNQQPMNILPPHYNQQFLMQHKMVEDCNGFDDSSNYAAWRNHTPCGRGWNSSSLNNTLNSLSTTHHQSSTRPALNGWQQPFSSNAGRSAARGRGILRGNRSRGSRSNVKFGTENDSSHRSRPHNSTHISDHLQEKKEGKKSAIAETIAMMSKMKMEDKERQVQKQSPDNDSSNSVNVLTENCSNIQYKNSHSRGSRYIKGRGYNCVGQNHINPMNNFLVPIRGIEGFLPFHQSIYTGSYPSNLYRTPFLPPVIPGSNNRGYRNCNNLYRGPPPPIMIAFKQNNISN 518 The following BLAST results are available for this feature:
BLAST of EMLSAG00000012717 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000012717 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 15
Pagesback to top
BLAST of EMLSAG00000012717 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000012717 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000012717 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000012717 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000012717 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s965:45558..55453- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000012717-695483 ID=EMLSAG00000012717-695483|Name=EMLSAG00000012717|organism=Lepeophtheirus salmonis|type=gene|length=9896bp|location=Sequence derived from alignment at LSalAtl2s965:45558..55453- (Lepeophtheirus salmonis)back to top Add to Basket
|