EMLSAT00000002965, EMLSAT00000002965-698812 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000002965
Unique NameEMLSAT00000002965-698812
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
2965 HSP70/HSC70 unknown
  1. Nauplius
 No visible phenotype
-Missing- 		01.01.2017 - 10:03
08.01.2017 - 10:14
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1703supercontigLSalAtl2s1703:50203..51078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000002965 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000002965EMLSAG00000002965-685731Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000013086EMLSAE00000013086-722014Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto770678auto770678Lepeophtheirus salmonispolypeptide
EMLSAP00000002965EMLSAP00000002965Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000002965

>EMLSAP00000002965 ID=EMLSAP00000002965|Name=EMLSAP00000002965|organism=Lepeophtheirus salmonis|type=polypeptide|length=292bp
MDPKKAIGIDLGTTYSCVGVFQHGKVQIIANDQGNRTTPSYVAFTDTEHL
IGDAAKNQESMNPNNTIFDAKRLIGRDFNDDSVQKDKKHWPFEVDNVGGK
PRIRVEYKCESKVFTPEEISAMVLTKMKETAEVYLGNSVSEAVVXVPAFF
NXXXRXATKEAGVISSLNILQIFNEPTAXAIAYGLDKKKGAGRREYNVLI
FDLGGGTLDVSILCIDDGVFEVKSSAGDTHLGGEDFDNRIADHFIMEFKR
KHKKDIAANKRAVRQLRTACERAKITLSSSDQANIEIDSLFE
back to top

mRNA from alignment at LSalAtl2s1703:50203..51078-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000002965-698812 ID=EMLSAT00000002965-698812|Name=EMLSAT00000002965|organism=Lepeophtheirus salmonis|type=mRNA|length=876bp|location=Sequence derived from alignment at LSalAtl2s1703:50203..51078- (Lepeophtheirus salmonis)
ATGGATCCTAAAAAAGCCATTGGAATCGATCTAGGAACAACTTACTCCTG
CGTGGGTGTCTTTCAACACGGGAAGGTGCAAATTATCGCCAATGATCAAG
GAAATAGAACGACCCCTTCCTATGTGGCATTTACGGACACGGAGCATCTC
ATTGGAGACGCCGCCAAGAATCAAGAGTCTATGAATCCAAACAACACCAT
CTTTGACGCCAAGCGACTCATTGGGCGGGACTTTAATGATGACTCAGTTC
AAAAGGATAAGAAGCATTGGCCCTTCGAGGTGGATAACGTTGGGGGCAAG
CCCCGTATCCGAGTGGAGTACAAATGCGAGAGTAAGGTCTTTACTCCCGA
GGAGATCTCTGCCATGGTTCTTACGAAAATGAAGGAAACAGCTGAAGTCT
ATCTTGGCAACAGCGTTTCTGAGGCTGTTGTGMCCGTTCCTGCCTTTTTC
AATGMCYCGMAAAGGMAAGCCACCAAAGAGGCGGGCGTGATTTCCAGCCT
GAATATCCTTCAAATCTTTAATGAGCCCACGGCTGKCGCCATTGCCTATG
GCTTAGACAAAAAGAAAGGAGCTGGAAGAAGGGAATACAATGTACTCATT
TTCGATCTTGGAGGTGGAACCCTTGACGTTTCTATTCTTTGCATCGATGA
TGGTGTTTTTGAAGTCAAGTCCTCTGCTGGGGACACTCACCTTGGGGGTG
AGGACTTTGACAATAGAATAGCGGATCACTTTATCATGGAGTTCAAGCGG
AAGCACAAGAAGGACATTGCTGCTAACAAGAGGGCTGTGAGACAATTGAG
AACCGCTTGTGAAAGAGCAAAGATAACTCTATCCTCCTCTGATCAAGCAA
ACATTGAGATTGATTCCCTATTTGAG
back to top
Add to Basket