EMLSAT00000003179, EMLSAT00000003179-699026 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000003179
Unique NameEMLSAT00000003179-699026
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
AP F365 EMLSAG00000003179 female
  1. PreAdult2
 slightly shorter gonade and abdominal segment
-Missing- 		06.03.2018 - 09:00
10.04.2018 - 09:00
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
EMLSAT00000003179 cop + infection Csdc2 both
  1. Nauplius1
  2. Copepodid
 no proper visible phenotype but maybe quicker development than controll
no visible phenotype 		09.05.2018 - 09:00
01.06.2018 - 10:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s176supercontigLSalAtl2s176:378973..380312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000003179 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000003179EMLSAG00000003179-685945Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000013922EMLSAE00000013922-722850Lepeophtheirus salmonisexon
EMLSAE00000013923EMLSAE00000013923-722851Lepeophtheirus salmonisexon
EMLSAE00000013924EMLSAE00000013924-722852Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto777053auto777053Lepeophtheirus salmonispolypeptide
EMLSAP00000003179EMLSAP00000003179Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000003179

>EMLSAP00000003179 ID=EMLSAP00000003179|Name=EMLSAP00000003179|organism=Lepeophtheirus salmonis|type=polypeptide|length=188bp
MESVVSSTTKDMKLNPSTPSPERPSNLXKIPLIRRTRCDSCSENVLSSTX
TTPGIIAESRDPPETYGTRRTRTESTAGKIVENLHEGIVKYFCRSRGFGF
ITPNKPINDNKEFFMHISDIEGEYVPRRDDQVKFKVCPIPPRFEKFQAVQ
VRIINFTPEVHHKWDVPETPEELQEEEDAVNAAQHYDV
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mRNA from alignment at LSalAtl2s176:378973..380312+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000003179-699026 ID=EMLSAT00000003179-699026|Name=EMLSAT00000003179|organism=Lepeophtheirus salmonis|type=mRNA|length=1340bp|location=Sequence derived from alignment at LSalAtl2s176:378973..380312+ (Lepeophtheirus salmonis)
GAATTCAAAACAACGTGCCCTAAGAAGTGCGTAAAAGTTGCGTACAATCT
GATATTATATTCGTTCTCATTCCGTGTTCACCATTTCTTGCTTTTAAGAT
GGAGAGTGTCGTGAGTTCGACTACCAAGGATATGAAGCTCAACCCAAGCA
CCCCATCCCCAGAACGGCCCTCAAATCTCATSAAGATTCCACTCATTCGA
AGAACACGCTGCGATTCATGCTCCGAGAATGTACTCAGCTCCACTKCGAC
CACTCCTGGAATCATTGCGGAGTCCCGTGACCCACCAGAGACCTATGGTA
CAAGGCGTACACGGACAGAGTCCACAGCGGGGAAGATTGTGGAGAATTTG
CATGAGGGAATTGTCAAATATTTCTGTCGATCCAGGGGGTTCGGATTCAT
CACACCCAATAAAGTAAACATTCCCCTCCCCCCCGCCAACCCCAGGCCTT
ATTCATTAGCATTGTAAGATTGTGTACTTATCCAATCCTCTTCCTCCTTT
TTCAGCCCATTAATGATAACAAAGAGTTCTTCATGCATATTTCTGACATT
GAAGGAGAGTACGTGCCTCGACGAGACGATCAAGTCAAGTTCAAAGTTTG
TCCTATCCCTCCACGATTTGAAAAGTTTCAAGCTGTTCAAGTACGAATAA
TTAATTTTACTCCAGAAGTGCATCACAAATGGGATGTTCCTGAGACTCCA
GAGGAACTGCAAGAGGAAGAAGATGCTGTGAACGCCGCGCAACACTATGA
TGTTTAAAGATGGTGATGATGATGATTACATAAAATAACAGAAATCTCTT
CTAATTACTAATCCATATTATTTTATATACACATTCTTTATTCATTAATT
ATATATTTAAAAAAACAACCGAATACTTAATAAAACACATTGGATTTTAT
TCTAGTAACATTCAATGTGGATTCCATTGTCGTCTTATATCAAAAGTATA
ATATATATATCAATCATATGATGTATTTTTGATTTTATACACAAGTCCTG
ACTTGCGCTTCAACATGCTTATTGCTTTGATGTCATCCGAGTATGTAATG
TCTTCATAATTAATATATCGATTTTCATAATATTGTATGAAGTGGTGTTG
CATATTATGTAAAAAGGAATTACTTGCATCACTTTGATTTGATAATATTA
TGTAAAAGCTTAATAATGATGTGCTAATACACTTTATATCAAATACCATT
CTCTATCAATTATATCTTTAAAGGTTATTGATTTGATCAAGCATATTCAT
ACTTACTTAATTGTATTATATTATAAATTCACACAAATATAGGTATATAG
TAAATACTTACCTATTCAATATTTATCTACAAATAATAAA
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