EMLSAT00000005061, EMLSAT00000005061-700908 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005061
Unique NameEMLSAT00000005061-700908
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
5061 Opsin unknown
  1. Nauplius
 No visible phenotype
-Missing- 		31.01.2018 - 10:03
07.02.2018 - 10:14
2839/5061/10390 Opsins unknown
  1. Nauplius
 No visible phenotype
-Missing- 		31.01.2018 - 10:03
07.02.2018 - 10:14
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s264supercontigLSalAtl2s264:303145..304233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005061 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005061EMLSAG00000005061-687827Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000022121EMLSAE00000022121-731049Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto776118auto776118Lepeophtheirus salmonispolypeptide
EMLSAP00000005061EMLSAP00000005061Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005061

>EMLSAP00000005061 ID=EMLSAP00000005061|Name=EMLSAP00000005061|organism=Lepeophtheirus salmonis|type=polypeptide|length=362bp
MDDVYYNQYPPGMKMTDGIPEELREVIHSHWDQFSPANPLIAHFFGVMFF
FLWVMNFVGNGLVIFIFSKVKSLRTPSNMFVINLALSDLLMMTTMGPAVT
VNVFMQRYWAWGVFGCKLYGCIGAICGVVSILTMVVIGYDRYNVIVKGLN
GFRISVGKALAIILVIWAYSIAISALALFDIWGGYTVEGLLFTCSYDYLT
DDANNTTYILFTFFFMYVLPMSLVFFFYSSIVKAVWAHEMALKQQAKKMN
VESLRTNVDSNAESAEIRIAKVAVTNVSLWAGIWTPXXLVVLXAVMGSRS
SITPLVSQLPSFIAKTASCLNPMVYAMSHPKYREALMKEVPCLGIEEESM
QETVTTKEPVKA
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mRNA from alignment at LSalAtl2s264:303145..304233+

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005061-700908 ID=EMLSAT00000005061-700908|Name=EMLSAT00000005061|organism=Lepeophtheirus salmonis|type=mRNA|length=1089bp|location=Sequence derived from alignment at LSalAtl2s264:303145..304233+ (Lepeophtheirus salmonis)
ATGGACGATGTCTACTACAACCAATATCCACCAGGTATGAAAATGACAGA
TGGCATCCCTGAGGAACTTCGTGAGGTCATCCATAGCCACTGGGATCAGT
TTTCTCCTGCCAATCCTCTCATTGCTCATTTCTTTGGAGTCATGTTCTTC
TTCCTATGGGTTATGAATTTCGTTGGCAATGGATTGGTTATCTTCATTTT
CTCCAAGGTCAAAAGCTTGAGAACCCCCTCCAACATGTTTGTGATTAATT
TGGCTCTCTCAGATCTACTTATGATGACCACTATGGGACCTGCTGTGACA
GTCAATGTTTTTATGCAGCGCTATTGGGCCTGGGGTGTGTTTGGATGCAA
ATTGTACGGTTGCATTGGAGCTATTTGTGGGGTTGTATCCATCTTGACCA
TGGTTGTGATCGGATATGATCGTTACAATGTCATTGTAAAGGGACTTAAT
GGATTTAGGATCTCTGTTGGAAAGGCATTGGCTATCATTTTGGTTATTTG
GGCTTATTCCATCGCCATCTCAGCTCTTGCACTCTTTGACATTTGGGGAG
GATACACGGTTGAGGGGCTTCTCTTCACTTGTTCCTATGATTACTTGACA
GATGATGCTAACAACACAACCTACATTCTCTTTACCTTTTTCTTCATGTA
CGTTTTACCAATGAGCCTCGTTTTCTTCTTCTACAGCTCAATTGTTAAGG
CTGTCTGGGCTCATGAAATGGCACTCAAACAACAAGCCAAGAAGATGAAT
GTAGAATCCCTTCGAACCAATGTGGACTCAAATGCAGAATCTGCAGAAAT
TCGTATTGCTAAGGTGGCTGTAACTAATGTCTCCCTTTGGGCTGGCATCT
GGACTCCATKCKCCCTAGTTGTTCTCAMGGCCGTCATGGGAAGCCGATCC
TCCATCACTCCTCTCGTAAGTCAACTTCCATCCTTCATTGCTAAAACTGC
ATCATGTTTGAATCCTATGGTGTATGCTATGAGCCATCCTAAATACAGAG
AAGCCCTAATGAAGGAAGTTCCTTGTCTTGGTATCGAAGAGGAGTCCATG
CAGGAAACAGTGACCACCAAGGAACCTGTTAAAGCCTAA
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