EMLSAT00000005221, EMLSAT00000005221-701068 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005221
Unique NameEMLSAT00000005221-701068
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s276supercontigLSalAtl2s276:209809..212602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005221 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005221EMLSAG00000005221-687987Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000022836EMLSAE00000022836-731764Lepeophtheirus salmonisexon
EMLSAE00000022837EMLSAE00000022837-731765Lepeophtheirus salmonisexon
EMLSAE00000022838EMLSAE00000022838-731766Lepeophtheirus salmonisexon
EMLSAE00000022839EMLSAE00000022839-731767Lepeophtheirus salmonisexon
EMLSAE00000022840EMLSAE00000022840-731768Lepeophtheirus salmonisexon
EMLSAE00000022841EMLSAE00000022841-731769Lepeophtheirus salmonisexon
EMLSAE00000022842EMLSAE00000022842-731770Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto774584auto774584Lepeophtheirus salmonispolypeptide
EMLSAP00000005221EMLSAP00000005221Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005221

>EMLSAP00000005221 ID=EMLSAP00000005221|Name=EMLSAP00000005221|organism=Lepeophtheirus salmonis|type=polypeptide|length=669bp
MKNNASDYVEGDLPRDWVAEDWEKNLINFQDEIVTSIDGGMYVFGVGFLL
ILIYSLLVTSDFHPVNQRVMLLLLGFMVIGMAIGSSFGLGFHIGIIYADL
HPIIPFLLLGIGVDDLFIIIKSTDNLSQKEKELPLKERIALVVQHSGVSI
TVTSLTDLVAFLISSTTSIPLLRAFCLSVALGISFLYFFVVTFFIAWYTL
DERRIEEGKAFLWFTKRVHSVPPKKSTWTHNLYKKYYVEYLFAIPSQLIL
GGISLLVFGFGIFGTFNIQQDYDPITYMRQNSYQVKFIEAKNRLYPEFGD
IVDIYVGNIPYWENIQEMKQIDSLVNNCQYVRTGSHSLYWFKHVIDVCES
EGFNCSTEFDFKKAIVFSLALKPFIFADLKLNITILEEFQDFQDLKWHIQ
SSKSTFQYGHLESISVQTKAMDEIILGLEKIIFEDSDFVSPISRSLAFHQ
WTANKVISKELIRNMSLNFACITIVLFMLLANIQLSLIVLFTVAMTITEI
AGFAYFVGLNIEIVTSLELILSVGLVLDYSAHIGVCYTIQKTGSRRERSQ
RALLDMGPAIFSGGFSTFLAFVVLFFNDSYIFTSFCHMLGFGVLFGLWNA
LVFMPLLLSYFGPLTEEELKTVSPXPSVGRVNMAFPCSNSDIAPXXSFQA
FVTSLNMVLLSNPIIMSSS
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mRNA from alignment at LSalAtl2s276:209809..212602-

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005221-701068 ID=EMLSAT00000005221-701068|Name=EMLSAT00000005221|organism=Lepeophtheirus salmonis|type=mRNA|length=2794bp|location=Sequence derived from alignment at LSalAtl2s276:209809..212602- (Lepeophtheirus salmonis)
TTTGGATTTACTCATCAATGAGCCAGAATGGAGTGATAATGGTAAAACAA
TTATTGGTGCAAAAGGGTTTCTCTCAATTTGGCTCATGAAAAACAATGCT
TCAGACTATGTTGAGGGTGATTTACCAAGGGATTGGGTTGCAGAAGATTG
GGAGAAAAATTTAATTAAGTTTTTAACAGATGGAACAGATCATCAACCTA
ACCTGGAAAATGCTTCAAACGACGCCATGGTCTACTCTTTTACAGAGAGA
AGGTAAGCATATCACCATTTGTATAACTTTGTTTGAGCCATAGAGAAAGA
AAAACATAAAAGGGTTCAAGAGAGTTTTATTGGTAGTTCGACAGAATTGA
CCAAAAGTACATATACAATCTATGTGAAGTGTGAAAGGATTCAAATTGAA
ATAAAGAAATATAATTCAAACACAAATATGATTTTTTCTCTTTAGAATAA
CTTTTATATCAGGTGAAGTCAATAGCTCAGTTTATTGGCCTTCTGTCAAT
GGTTTATATATATATAAATACATACTATAGCTTTGTATATTCTTTTTTCA
GCTTTCAAGATGAAATTGTTACATCAATTGATGGTGGAATGTATGTATTT
GGAGTAGGATTTCTTCTCATCCTTATATACTCGTTGTTAGGTAGATAAAT
CAATCACTACCCATTTGTTTTTCATGACTTTTAATTCTCTTACAGTAACC
TCTGACTTCCACCCTGTCAATCAACGAGTCATGTTACTTCTCCTTGGTTT
TATGGTGATTGGAATGGCAATAGGCTCTTCATTTGGTCTTGGCTTTCATA
TTGGAATCATTTACGCAGATCTCCACCCCATCATACCCTTTCTACTCTTG
GGTATTGGTGTAGACGACCTCTTCATCATCATCAAGTCAACAGATAATCT
AAGTCAAAAAGAAAAGGAGTTACCTCTAAAAGAACGAATTGCACTTGTTG
TACAGCATAGTGGGGTGTCAATAACAGTCACATCTCTAACTGATCTTGTG
GCTTTTTTAATTAGTTCTACAACGTCCATTCCTTTATTGAGAGCATTTTG
TCTCTCTGTGGCTCTCGGGATATCTTTTCTCTATTTTTTTGTTGTCACAT
TTTTTATAGCCTGGTATACCTTGGATGAACGTCGAATTGAGGAAGGGAAG
GCTTTTCTATGGTTTACCAAACGTGTACACAGTGTTCCCCCAAAAAAATC
AACATGGACTCATAATTTGTATAAAAAGTATTATGTGGAATATCTTTTTG
CGATACCAAGTCAATTGATTCTTGGAGGAATAAGTTTGTTGGTATTTGGT
TTTGGGATCTTTGGTACATTCAATATTCAACAAGACTATGATCCTATAAC
CTACATGAGACAAAATTCTTACCAAGTTAAATTTATAGAGGCCAAGAATC
GACTTTATCCAGAGTTTGGTGATATTGTTGATATATATGTAGGTAATAAT
ATTGGTATTCATAATTAAATTATTGGTCAGTATGAGTTATTCGTTTGTAA
ATATTGCAGGAAATATTCCATATTGGGAGAATATACAAGAAATGAAACAA
ATTGATAGTCTTGTCAACAATTGTCAATATGTTCGCACAGGATCTCATTC
CCTTTATTGGTTTAAACATGTCATTGATGTCTGTGAAAGTGAAGGCTTCA
ATTGCTCAACAGGTAAGAAGATTTTTAAAATATCCTACTTTAACATTTCT
TAGAAACCTCACAATTTTTTTTCAGAGTTTGATTTTAAAAAGGCCATTGT
GTTTTCCCTAGCACTTAAGCCATTCATTTTTGCTGATTTAAAACTTAATA
TAACTATTTTGGAAGAATTTCAAGATTTTCAAGATTTAAAGTGGCATATT
CAATCTTCAAAAAGTACCTTTCAATATGGTCATTTAGAGAGTATTTCTGT
ACAGACTAAAGCAATGGATGAAATTATTCTGGGTAAGTCTTAAATTTAAG
AGAAAATATTTTTAAATGATATAATAATATTATCATTATTGTTTTTATAA
AGGTCTGGAAAAAATTATTTTTGAGGATTCAGATTTTGTTTCACCGATTT
CTCGATCCCTGGCATTCCATCAATGGACAGCAAACAAGGTATGTCAATAA
AAAATAGTAATTTTAATCGTTATTAATTATTTCATATTTCACTTCTTCAT
AGGTCATATCCAAGGAATTGATTCGGAACATGAGTTTAAACTTTGCCTGC
ATCACAATTGTTCTTTTTATGCTTTTGGCAAACATTCAACTAAGTCTTAT
TGTTCTATTTACTGTTGCAATGACCATTACAGAGATTGCTGGTTTCGCCT
ATTTTGTGGGGTTAAATATTGAAATAGTCACATCCCTGGAATTAATTCTC
AGTGTAGGATTAGTTCTTGATTACTCAGCTCACATAGGTGTATGCTATAC
CATTCAAAAGACTGGTTCGCGAAGAGAAAGAAGTCAAAGAGCCTTGCTTG
ACATGGGCCCAGCTATATTTAGTGGAGGGTTTTCAACCTTCCTTGCCTTT
GTCGTACTGTTCTTCAATGATTCTTACATTTTTACATCATTCTGTCATAT
GTTGGGCTTTGGAGTTCTTTTCGGATTATGGAATGCATTAGTTTTTATGC
CACTTCTTCTTAGCTACTTTGGGCCTCTGACGGAAGAAGAACTAAAAACG
GTATCTCCTMCTCCTTCCGTAGGAAGAGTCAACATGGCATTCCCTTGCAG
TAACTCTGATATAGCTCCTNNNNNNTCGTTCCAAGCCTTTGTCACATCCT
TGAATATGGTATTGCTATCTAACCCCATTATTATGTCTTCATCT
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