EMLSAT00000005706, EMLSAT00000005706-701553 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005706
Unique NameEMLSAT00000005706-701553
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
AP F247 EMLSAG00000005706 female
  1. PreAdult2
 No visible phenotype
no visible phenotype 		06.03.2018 - 09:00
10.04.2018 - 09:00
AP F247 T11_5706 female
  1. PreAdult2
  2. Adult
 -Missing-
no visible phenotype 		07.03.2018 - 13:26
10.04.2018 - 00:00
AP F245 T10_8281 female
  1. PreAdult2
  2. Adult
 -Missing-
no visible phenotype 		07.03.2018 - 13:26
10.04.2018 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s309supercontigLSalAtl2s309:39291..41869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005706 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005706EMLSAG00000005706-688472Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000024951EMLSAE00000024951-733879Lepeophtheirus salmonisexon
EMLSAE00000024952EMLSAE00000024952-733880Lepeophtheirus salmonisexon
EMLSAE00000024953EMLSAE00000024953-733881Lepeophtheirus salmonisexon
EMLSAE00000024954EMLSAE00000024954-733882Lepeophtheirus salmonisexon
EMLSAE00000024955EMLSAE00000024955-733883Lepeophtheirus salmonisexon
EMLSAE00000024956EMLSAE00000024956-733884Lepeophtheirus salmonisexon
EMLSAE00000024957EMLSAE00000024957-733885Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto770248auto770248Lepeophtheirus salmonispolypeptide
EMLSAP00000005706EMLSAP00000005706Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005706

>EMLSAP00000005706 ID=EMLSAP00000005706|Name=EMLSAP00000005706|organism=Lepeophtheirus salmonis|type=polypeptide|length=406bp
MTNLKILWSLLFLYGSNIGLLHGIESSLIIVKEKDPLHVSCQGSRPYSIC
KITLPQGTICTIKGGESEKSCEDGAKFDKTDPNACALDIESASSDFNGFY
KCEIITFEDDDGGKATSDAQDIEVIVSTPADVEFDDIYGSVTVIVNKQNN
FTCTAEYGRPVGEFIWRLGEEDEDNAVFFDNESPMNIVKDENSYYKVSQS
FWYNPEIDHNAKNLYCIYNQHDQDGNVIHSTSDHISFDVYYLNEPAAATL
KAKNPRDPSVFMDGKYILDPIINAGDQMYSIGFTISNVTEEDFARTYDVK
ISNRKKHSNDLILSTVHTFDIQTSTAGGSSDTGSSSTVTGIVISIALILL
LITLVTILVMTYMYKKWCFAPKDPHSKPGYDGDVEQPLNDLNDTQIGGSS
IIKPRS
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mRNA from alignment at LSalAtl2s309:39291..41869-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005706-701553 ID=EMLSAT00000005706-701553|Name=EMLSAT00000005706|organism=Lepeophtheirus salmonis|type=mRNA|length=2579bp|location=Sequence derived from alignment at LSalAtl2s309:39291..41869- (Lepeophtheirus salmonis)
ATGACGAATTTGAAAATTCTCTGGTCTCTTCTTTTCCTTTATGGGTCGAA
CATTGGCCTTCTTCATGGAATTGAAAGTTCCTTGATAATTGTGAAAGAAA
AAGATCCTCTACACGTTTCTTGTCAAGGGAGTCGTCCGTAAGTTATTAAT
TATAATTAGCCAAACGTATGATTGCCTCCTTCATTAATTATTATTGGTAT
GCCTCAGATACTCAATATGCAAGATTACCCTCCCGCAAGGAACTATTTGT
ACAATCAAGGGAGGAGAATCCGAGAAAAGTTGTGAGGATGGAGCTAAATT
TGATAAGACGGATCCTAACGCTTGTGCCCTTGATATTGAATCTGCAAGCT
CAGATTTCAACGGATTTTACAAGGTACATTATTTGTATATCACTCGGTTA
TTATGATTTTTTTTTAAATTATTTTATTTTGAATATTAGTGTGAGATTAT
TACATTTGAAGACGATGATGGGGGAAAGGCTACGTCAGATGCCCAAGATA
TTGAAGTAATTGTATCAACGCCTGCTGACGTGGAATTCGATGATATTTAC
GGATCTGTTACTGTTATCGTTAGTAAGTTGTATTCGAAATAATATTATGG
TATTACTTTAGAGATATGTGCAACTTTTTTTCCTAAAATGTCCTTTATAA
TCACGTTACTGTTAGTATGATTCGAAAATTTCAATTTATGAAATGAAACA
CTATAGCAGGTCTGTTCAAATATTATAACCAAATGTCAGGTTAGACAATG
AATAGCTCTGTAAATCTTCCATCCATGTTGCTGAACTATATTGTTTTGTA
CTGGGCTTGGGGCTGAACAACAACATTTAGAAGGTTCGGATTCAGATCCT
AGMCCACAAGTAGAGTAGACTTGCAAGACAATATTGTATTTATCATTTAT
AAAAAAAATAGCCACATAAAAACCTATTAGAGGGCCACATAAGCACAATT
GACCTCTGATAGACATAATTCATTACAATTAATACGTATTATTCTAAATT
TACATAGACAAGCAAAATAATTTCACATGTACTGCCGAATATGGACGCCC
CGTTGGAGAGTTCATTTGGCGACTTGGTGAAGAAGACGAGGACAATGCTG
TATTTTTTGATAACGAATCCCCAATGAATATTGTGAAAGATGAAAATAGT
TATTACAAGGTGTCTCAAGTATGTATATAAATTGGATTATTTGATATATC
CATTGGCCATTCTCTTTCTTCCGACTAATCAAAACCAATGTTTTTTTCTT
ACAGAGCTTTTGGTATAATCCTGAAATTGACCATAATGCGAAAAATCTCT
ACTGCATCTATAATCAACATGATCAAGATGGAAATGTTATTCATAGTACA
AGTGATCATATTTCTTTTGATGTCTACTATTTGAATGAACCTGCAGCAGC
AACTGTTATTCCAAAGGTGGATGTAAGTGATTTGATTGATTTTATACGTT
TATATGCTGCGTAGAAGTTGTAACCAAAAAATTCGATGGAGAATTTAGAG
TACATGTGAGGAGGAATGTACAATATCTGTATWTTCYTTGGATAGAYTAT
CCATTAATGCTATCATTTTGGACTTTTTGTATGAAAACTACTAATGAATA
AGCATTTTGTGACATATTATAAAGTTCAAATGCCCTCATTGACCTAACTC
GTAAATGCATAATAACCATGATAGATTTTAATAAAACAAAATGAAATGAT
AGCACCAATTAATAGTTGGTAATTTTAATGACAAATGTTATATAATTAAA
CAAGGAATTATAAATTGCAACTCGTTTATAATTACAACTTGTACATTACA
CATATTTATATTTGTTCAAATTCAATCACATTTTAAATCCGTTTTTACAC
TTATAATAAAAGCTTGGTGAGGATTTTCATATATCTTACATCTTTGGCTC
ATACCCTAAGCCAAAAATTGAAGACATAATATGGAGAATTAAGGGAACTG
AGGATGTAAACATTGAGGTAATTAATTACTACTCTAAATTAATTATTAAT
TTGAATGCTCATTATTGAATAAAACGCCATATCCTAATAGTTAAAAGCAA
AAAACCCAAGGGATCCATCCGTATTTATGGATGGAAAATATATTTTGGAT
CCAATTATAAATGCTGGAGATCAAATGTATAGCATTGGTTTTACTATTTC
AAACGTTACTGAAGAGGATTTTGCAAGAACTTACGATGTGAAAATTAGTA
ATCGTAAAAAACATTCCAACGATCTTATCCTTTCAACAGTTCACACGTAA
GTAGTCATTTATCTTAAGTGACTTTATTTTTATTTTAATATATGATCATC
TCTTCAAATAGTTTTGACATACAAACGTCAACTGCAGGTGGATCCAGTGA
CACTGGATCATCAAGTACTGTTACAGGGATCGTTATATCCATTGCGCTAA
TTCTTTTGCTCATTACTCTTGTCACGATCCTCGTAATGACTTATATGTAC
AAAAAGTGGTGTTTTGCTCCCAAAGATCCTCATTCCAAGCCAGGGTATGA
TGGAGACGTTGAACAGCCTTTAAATGATTTGAATGATACTCAAATTGGAG
GCTCTTCCATTATCAAACCTAGGTCATAG
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