EMLSAT00000006302, EMLSAT00000006302-702149 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000006302
Unique NameEMLSAT00000006302-702149
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
D F28 g158_glycin_trans female
  1. PreAdult2
-Missing-
-Missing-
24.08.2012 - 13:22
03.10.2012 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s343supercontigLSalAtl2s343:134544..138553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000006302 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000006302EMLSAG00000006302-689068Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000027501EMLSAE00000027501-736429Lepeophtheirus salmonisexon
EMLSAE00000027502EMLSAE00000027502-736430Lepeophtheirus salmonisexon
EMLSAE00000027503EMLSAE00000027503-736431Lepeophtheirus salmonisexon
EMLSAE00000027504EMLSAE00000027504-736432Lepeophtheirus salmonisexon
EMLSAE00000027505EMLSAE00000027505-736433Lepeophtheirus salmonisexon
EMLSAE00000027506EMLSAE00000027506-736434Lepeophtheirus salmonisexon
EMLSAE00000027507EMLSAE00000027507-736435Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto773002auto773002Lepeophtheirus salmonispolypeptide
EMLSAP00000006302EMLSAP00000006302Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000006302

>EMLSAP00000006302 ID=EMLSAP00000006302|Name=EMLSAP00000006302|organism=Lepeophtheirus salmonis|type=polypeptide|length=1094bp
MSLKPLKDLKPSSKDASSTSSSSSTHQSKNNPSSPERNSPTSTSGGDAHL
LPQGFRSHSSFLIEDILFQRPKLIADLANRSSESSELSKEAPNSSSCSLS
ASGFSKYINDYNQLAAYLSPMGLAAAAXQASAAAGILQQSILHHKHHSPS
GNNNASPTTNSTPPFFLSSSTYYLQGYIKFLSHEYCLILLDLPFSSLFTT
ESGKQCRRRKARTVFSDHQLCGLERRFEAQRYLSTPERVELATALSLSET
QVKTWFQNRRMKHKKYIRKQSELPSSQMIEGNSGSTPIILICSYFFIFVT
HDDLEVKNCDLLEVSPLRGKEGFIISWKMSNDDEGLRPLGQMEENESTLR
DALPMSPLFEKMPPLSRFRCLSDGEDRYSYFSTLPPKQXPEAYSTSSSFQ
YAKGTPKRASSSDRLLSRSLALTSTYTSFDEITLEVEKEACTLPVETSEL
QPSSTLDRKIFPNKYVGSLDSGLGGSSTLQSAPSNSESIFGKSFDDYPMR
TPLGIPDWNDQIYESGNVIQWSNRYDFVIIGLLLGCTLRTLIELPLMALQ
NGGWIFLVIYGLFLVIVGIPLSFLLSALGQYSQRGLVHAWKIVPFFIGIG
SILLCLFFVSAVLDSAVASYALLYVLGSFLKELPWTMCDGDWNNIKDCDR
FDHVRSVSVMSESCIAPESNCTSRSEIHSTALLFWEKFNGFSLESGREVY
YEPRWETFASAGFVWLVIWLISIKNFEFVRKVLYSIVIFFILAFTTYFIR
MSVMEGTGHWNYFGFDYEKCLDYHFWARAAGLAIRTSFASGLPLFLGSRN
FTFYKVHYQTVLLQFLLYLMGILSTLAFCALFAVNKNLVHLKELDYISFT
FVVPSEAFRGAPMNRLWSLLFFALIFSGQLGSVLLFLEGIYTTLEDVGFA
LESKLNYSLKRFIKCTFISICGLICTLVFSTSLGLALYHTIIEYFFGITE
VFIALLTIVSISYIYGLRLWSNALHYMLKTECRIFYSSWLVICPLVILYV
LIVRLSDLKLDNSMELVIAAVQSLLILQIPICAFCKFFYSGINCSRELFV
PSSDWGLRSKRIPXGSMHXTLLLSKRSDKFSRREDIKSNPYSYY
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mRNA from alignment at LSalAtl2s343:134544..138553-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000006302-702149 ID=EMLSAT00000006302-702149|Name=EMLSAT00000006302|organism=Lepeophtheirus salmonis|type=mRNA|length=4010bp|location=Sequence derived from alignment at LSalAtl2s343:134544..138553- (Lepeophtheirus salmonis)
ATGTCTTTGAAACCATTAAAGGATTTAAAGCCTTCATCTAAGGATGCCTC AAGTACTTCATCATCATCCTCTACCCATCAAAGCAAAAATAATCCATCAT CCCCAGAGAGAAACTCACCCACAAGTACTTCAGGTGGAGATGCTCATCTC TTACCACAAGGCTTTAGATCACATTCTTCATTCTTAATAGAGGACATTCT CTTTCAGAGGCCAAAGGTATAATAGCTTCCTCACTCCTTGAATCTTGATT CACATTTTTTTTTAATAGTGAAAACTGCTCCACGAACAAATTTTCTAATT CATTTTTTCCATTTAGCTTATTGCAGACCTTGCTAATCGCTCCTCCGAGT CCTCAGAGCTATCAAAAGAGGCTCCCAACTCTTCTTCATGCTCCCTCTCA GCATCAGGGTTTTCGAAATACATCAACGACTACAATCAATTAGCTGCATA TCTATCMCCCATGGGGCTAGCCGCTGCAGCGKCTCAAGCCTCCGCAGCAG CAGGAATACTTCAGCAGTCAATTCTTCATCATAAACATCATTCTCCATCA GGAAATAACAATGCTTCTCCAACAACAAATTCAACACCTCCATTCTTCTT GTCCTCAAGTACGTATTATTTACAAGGGTACATTAAGTTCCTATCTCATG AGTACTGCCTCATTCTTTTAGATCTCCCATTTTCCTCACTCTTTACGACG GAGAGTGGAAAACAATGTCGGAGGAGAAAGGCTCGTACAGTTTTTTCTGA TCATCAGCTCTGTGGTCTCGAAAGACGATTTGAAGCTCAACGTTATCTCT CCACTCCAGAGCGTGTTGAATTAGCCACGGCTCTAAGTCTTTCTGAAACA CAAGTTAAAACATGGTTTCAAAACAGACGAATGAAACACAAGAAATACAT CAGAAAACAGTCCGAACTCCCTAGCTCACAAATGATTGAAGGGAATTCAG GGTCCACTCCAGTGCATGAAGATGATGAGTCCAATGATGAAGAATCATTT GAAAGAGAAGAGNNNNNNNNNNNNNNNNNNGGTCAAATTCCTTATTTCAT CCTACACACTCCAATACCGCAAATCATAAGTTTGATTCCTCATTTTCGTA TACCTCTTCAAATAATAAAAGTCATTTTAAAGTATCGTCATCCGTGAAGA AAGAAAATCCAAGTTATTAATACTAAAATGTCAATTATACATAAATAATA CATAATATTAAATATAATATATTGAAATCTCAAAAGAAAGTATAAAATTC CATGATTTGATTTGATCTAATATCCTCCTTCTTTGAATTATAGTTCATCT ATGAAATAAATAAAATGTCGAAACAAGATTATCTTGATTTGTTCTTATTT TTTTATCTTTGTCACTCATGATGATCTAGAAGTTAAGAACTGTGATTTAC TTGAAGTCTCTCCCTTGAGAGGAAAAGAAGGGTTTATAATAAGTTGGAAG ATGTCGAATGATGATGAGGGACTCCGGCCCTTAGGACAGATGGAGGAAAA TGAGTCTACCCTGAGGGATGCACTACCCATGTCCCCTCTCTTTGAAAAGA TGCCCCCCTTATCTCGATTTCGGTGTCTCAGTGATGGGGAGGATCGCTAT TCCTATTTCTCCACCCTTCCTCCGAAACAAYCCCCAGAAGCCTATTCTAC GTCCTCTTCTTTTCAATACGCAAAAGGAACTCCTAAAAGAGCCTCTTCCT CGGACCGTTTACTGAGTAGAAGTTTGGCCCTCACCTCCACCTACACCAGC TTTGATGAAATTACACTGGAAGTGGAAAAGGAGGCATGTACTCTCCCTGT GGAGACCTCGGAGCTTCAACCTTCTTCCACTCTTGATAGAAAAATATTTC CAAATAAATATGTCGGATCTTTAGACTCTGGACTAGGGGGATCATCCACT CTTCAGTCTGCACCTAGCAATTCCGAGTCCATATTTGGGAAAAGTTTCGA TGACTATCCAATGAGAACACCTCTGGGTATACCTGATTGGAATGATCAAA TGTATGCAAATTCTCTTTTTTTAGATTATTATATTTGAAACCAAACAATG TAATTTTAGATATGAGAGTGGCAACGTGATACAATGGAGTAATCGCTATG ACTTTGTCATCATAGGACTTCTTCTTGGTTGCACACTTCGAACACTCATT GAGCTTCCTCTAATGGCACTTCAAAATGGGGGATGGATATTTTTAGTTAT ATATGGTTTGTTTTTAGTCATAGTTGGGATTCCTCTCTCCTTCTTGCTAT CTGCATTGGGGCAATACAGTCAGCGAGGCTTAGTCCATGCATGGAAGATC GTTCCTTTTTTTATTGGCATCGGTTCTATACTTCTCTGTCTTTTCTTTGT GAGTGCAGTTTTGGATAGTGCTGTGGCCTCTTATGCTCTTCTCTATGTGT TAGGATCTTTTCTTAAGGTATTATGATATGAAGGATTTATTTTACAATTA TTTTTATCTCTTCAATAAATAGGAACTACCTTGGACAATGTGTGATGGAG ATTGGAACAATATCAAGGATTGTGATCGATTTGATCACGTTCGCAGTGTT TCTGTCATGTCTGAGTCCTGTATTGCTCCTGAAAGTAATTGTACATCTCG CTCCGAAATTCACTCAACTGCTCTTCTCTTTTGGGAAAAATTTAATGGAT TCTCTTTAGAGAGTGGTAGAGAAGTGTATTATGAGCCTCGATGGGAGACC TTTGCTTCAGCAGGATTTGTTTGGCTTGTTATATGGCTGATATCAATCAA GAACTTTGAATTTGTTCGCAAAGTCCTCTACTCTATTGTGATATTTTTTA TACTAGCTTTTACTACATACTTTATTCGAATGAGCGTTATGGAAGGAACA GGTCATTGGAATTATTTTGGATTTGATTATGAGAAATGTCTCGATTATCA CTTTTGGGCTAGAGCGGCTGGATTAGCTATTCGAACATCATTCGCTTCAG GACTTCCTTTGTTCCTTGGATCAAGGAATTTTACTTTTTATAAAGTGCAT TATCAAACGGTTTTACTTCAATTTTTGCTCTATTTAATGGGGATTTTGTC AACTCTTGCATTTTGTGCCTTGTTTGCCGTGAACAAAAATTTGGTGCATT TGAAAGAATTGGACTACATTTCTTTTACATTTGTTGTTCCCTCAGAGGCT TTTAGAGGGGCACCTATGAATCGACTATGGAGCTTATTATTTTTTGCCCT AATATTTTCTGGGCAATTGGGGTCTGTACTCTTATTTTTGGAAGGGATTT ATACGACTCTTGAGGACGTTGGGTTTGCTCTCGAATCTAAATTAAATTAT AGTCTTAAACGATTTATTAAATGTACTTTTATATCAATTTGTGGACTCAT TTGTACTCTAGTCTTTTCCACAAGTTTGGGATTGGCACTTTATCATACCA TAATTGAGTACTTTTTTGGGATAACTGAAGTTTTTATTGCATTATTGACG GTAATTATATGACCAATTAATCTTTAATTCAATTATATTGGTTGTTGTTT TTTTTCCAGATAGTTTCAATCTCTTACATTTATGGACTTCGACTTTGGAG TAATGCTCTTCACTACATGCTTAAAACAGAATGCAGAATATTTTATTCTA GCTGGCTTGTCATTTGTCCACTAGTTATTTTGTACGTTTTGATTGTAAGG CTCTCTGATTTGAAATTGGATAACTCTATGGAGCTCGTCATCGCTGCTGT TCAATCTCTTTTAATCCTTCAGGTTTATTTATTTATTTTTAGCTTATGAT CATTTGTAACTTGAGACTCAGCACACGACTCCCCCTCCCTAATCCTCTTA TCCTTTCAGATTCCTATATGCGCATTCTGCAAATTCTTCTACTCTGGAAT CAATTGCTCGAGGGAACTTTTTGTACCTTCATCTGATTGGGGTCTTCGAT CTAAAAGAATTCCCMCAGGCTCAATGCATGNTACTCTTTTACTCTCTAAA AGATCGGACAAGTTTTCTCGAAGAGAAGACATTAAATCAAATCCTTATTC TTACTATTAA
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