EMLSAT00000008531, EMLSAT00000008531-704378 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000008531
Unique NameEMLSAT00000008531-704378
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: survival, reduced
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
Q F103 UN22_g1732 female
  1. PreAdult2
  2. Adult
 Reduced survival
survival, reduced 		10.06.2014 - 13:35
22.04.2014 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s526supercontigLSalAtl2s526:109566..111701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000008531 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000008531EMLSAG00000008531-691297Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000037899EMLSAE00000037899-746827Lepeophtheirus salmonisexon
EMLSAE00000037900EMLSAE00000037900-746828Lepeophtheirus salmonisexon
EMLSAE00000037901EMLSAE00000037901-746829Lepeophtheirus salmonisexon
EMLSAE00000037902EMLSAE00000037902-746830Lepeophtheirus salmonisexon
EMLSAE00000037903EMLSAE00000037903-746831Lepeophtheirus salmonisexon
EMLSAE00000037904EMLSAE00000037904-746832Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto772392auto772392Lepeophtheirus salmonispolypeptide
EMLSAP00000008531EMLSAP00000008531Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000008531

>EMLSAP00000008531 ID=EMLSAP00000008531|Name=EMLSAP00000008531|organism=Lepeophtheirus salmonis|type=polypeptide|length=585bp
MLLYALDGIKCDVTHASTIYEHHKTSFNTGLRYASHRSHRGSRGAAAKDM
LLSSVPETRSTLSHVPSRDEKCPFVPTFESIIQTRRKQAAKSLVVQVKSK
YSAEELFLTCQSSLGPVDSLHFFSRADSKELSNFYIVEFQEESSIEKALY
SKEGVQFFDYSRKEVDTFIPVRSPFTWLFGGGAKETERDSKSSNTIPNYI
PVTFPLERPSVTELPSFLSDITSLELQILEFERLSNMLDISSRIRFLTCR
QLELCLSGLFGTFVSILPFGSSVNSFGSCDSDLDMVINFSSLEKNDDSAS
QLYFHVKGGFGQRNMSQMYIRILANLLQDIVPGIRNVQSISNARVPILKY
HHQLLNLECDLSASSLSGVFMSELLYLYGEMDSRVRPLVLVIRRWAKEYG
LVTNTRPTKMFTNFTITLLVIFFLQHNHKILPSVDCLRELGDPKELKICS
DGVKRDFLTDISGYQSYLNSQYSLNEDKPTLEALLKDFFDFYGDFDFKGA
TICINSGKIRGPGKDRLNIINPLEPHLNVSANVSLNSISSFQLYCKRTLA
LINANPCFNSLFRGRVSRNLNDLFQTMDSNKKSRK
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mRNA from alignment at LSalAtl2s526:109566..111701-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000008531-704378 ID=EMLSAT00000008531-704378|Name=EMLSAT00000008531|organism=Lepeophtheirus salmonis|type=mRNA|length=2136bp|location=Sequence derived from alignment at LSalAtl2s526:109566..111701- (Lepeophtheirus salmonis)
ATGCTCTTGTATGCTCTAGATGGGATAAAATGTGACGTCACACATGCGTC
CACTATATATGAACATCACAAAACCTCGTATGTTTTGATTCGGCTGGGAT
TCTCCAATCGACAATCTTGGATTGCCAGCTACCAGAACAGTCCGAACAGG
AGCTTGGATTAGAGATTAGTGCGTGGAAGAATCGTATCAAATATGTTCAT
TACAAGATTTAATACAGGACTTCGCTATGCCTCACACCGAAGTCATCGAG
GGTCTCGTGGAGCTGCAGCTAAAGACATGCTCCTCTCGAGTGTGCCAGAG
ACCCGATCTACACTTTCCCATGTCCCTAGTAGGGATGAAAAATGTCCATT
TGTTCCTACATTTGAGTCCATAATTCAAACTAGACGAAAACAAGCTGCTA
AAAGTCTTGTGGTTCAGGTCAAGTCCAAATATTCTGCTGAAGAGCTCTTT
TTAACTTGCCAATCATCTCTCGGACCCGTTGATTCTCTCCATTTTTTTTC
GCGAGCCGATTCCAAGGAACTATCTGTAATTTTAAATTAATTTATATTCC
CATTTGATCTTATTACGTAGAATTATTTATTTCCCTGACTGAATGTTTAG
AATTTCTACATCGTCGAATTCCAAGAGGAGTCATCTATAGAAAAGGCACT
TTATTCCAAAGAAGGCGTTCAGTTTTTCGACTATTCACGCAAAGAAGTTG
ATACTTTTATCCCTGTGAGATCTCCATTTACTTGGCTTTTTGGCGGGGGA
GCCAAGGAAACGGAAAGAGACAGTAAATCCTCTAACACCATACCTAATTA
CATACCAGTCACTTTCCCCCTAGAAAGGCCTTCAGTTACAGAGCTACCTT
CGTTTCTTTCTGACATAACATCTGTAAATAGTATTTTAATCTATCGTTTG
AGCTTATTCTAATATTGTTTTTTCTTATTTAAGCTAGAATTACAAATCTT
AGAATTTGAACGCCTATCGAACATGCTCGATATTTCATCAAGAATACGTT
TTTTAACTTGTCGACAATTAGAACTGTGCCTAAGTGGCCTATTTGGTACA
TTTGTTTCAATACTTCCATTTGGTTCTTCTGTAAATTCATTTGGGTCATG
TGATTCAGACCTTGATATGGTTATTAATTTTTCTAGTCTTGAAAAAAATG
ATGATTCAGCCAGTCAATTGTATTTTCATGTAAAAGGCGGATTCGGACAA
AGGAATATGTCTCAAATGTATATTCGAATACTTGCTAATCTGTTGCAGGA
TATCGTTCCTGGAATTAGGAACGTTCAAAGTATATCAAATGCACGCGTAC
CCATCCTTAAATATCATCACCAACTACTAAATCTTGAATGTGATTTAAGC
GCATCGTCATTGTGATTACTTTTAGAACATTTACTTTTCTACTTTTTTTA
CATATTAGTTCTTATCTTTTAGGTCTGGAGTTTTCATGTCAGAATTACTC
TATTTATATGGAGAAATGGATTCACGAGTAAGGCCCCTCGTACTAGTAAT
ACGACGCTGGGCCAAGGAATACGGTCTTGTCACGAATACTCGACCAACTA
AAATGTTTACTAACTTCACAATCACTCTTCTCGTAATATTTTTCCTTCAG
CATAATCATAAAATTCTTCCGTCTGTGGATTGCTTGCGAGAACTTGGAGG
TTTGATAGTAAAGAATAGTGACATAGTTATCTCCATTTTTGCATATTTTT
AGATCCAAAAGAATTAAAAATTTGTTCGGATGGAGTGAAGAGAGACTTTC
TTACGGATATTAGTGGTTATCAGTCATACCTGAACTCCCAATATAGCCTG
AATGAAGATAAACCTACTCTAGAAGCACTACTCAAAGATTTTTTCGACTT
TTATGGAGATTTTGACTTCAAGGGGGCTACTATATGTATTAATTCTGGCA
AAATACGTGGACCAGGAAAGGACAGGCTTAATATTATCAATCCTTTAGAG
CCTCATTTGAATGTCAGTGCAAATGTGTCATTAAATTCAATCAGCTCTTT
TCAATTATATTGCAAAAGAACGTTAGCTCTCATAAATGCGAATCCGTGCT
TTAACTCTTTATTTCGAGGTCGAGTATCGAGAAACTTGAATGATCTTTTT
CAAACTATGGATTCAAATAAAAAAAGTCGAAAATAA
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