EMLSAT00000011537, EMLSAT00000011537-707384 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000011537
Unique NameEMLSAT00000011537-707384
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s799supercontigLSalAtl2s799:381305..384324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000011537 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000011537EMLSAG00000011537-694303Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000051558EMLSAE00000051558-760486Lepeophtheirus salmonisexon
EMLSAE00000051559EMLSAE00000051559-760487Lepeophtheirus salmonisexon
EMLSAE00000051560EMLSAE00000051560-760488Lepeophtheirus salmonisexon
EMLSAE00000051561EMLSAE00000051561-760489Lepeophtheirus salmonisexon
EMLSAE00000051562EMLSAE00000051562-760490Lepeophtheirus salmonisexon
EMLSAE00000051563EMLSAE00000051563-760491Lepeophtheirus salmonisexon
EMLSAE00000051564EMLSAE00000051564-760492Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto777083auto777083Lepeophtheirus salmonispolypeptide
EMLSAP00000011537EMLSAP00000011537Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000011537

>EMLSAP00000011537 ID=EMLSAP00000011537|Name=EMLSAP00000011537|organism=Lepeophtheirus salmonis|type=polypeptide|length=481bp
MSFSTDEVNFLVYRYLQEAGFSHSAFVFGQESHVSQSNINGALGLLYVEA
EISTGEDGSERLIDGLSLIDAVMPDVVASRKQQQQXDHKSSPVESVKLED
RQQTASAPSDDHPQQQHPMDIDTNIEIPAEKASVLKGHDSEVFICAWNPM
QDLLASGSGDSTARIWHMEDSQQREIILKHCIHRGGQEVPSNKDVTSLDW
NSSGSLLATGSYDGFARIWSTTGKLEKTLGQHKGPIFALKWNKSGNYILS
AGVDRTTIIWDSQTGNHKQQFAFHSAPALDVDWQTDESFASCSTDKCIHV
CKLGVEKPIKSFYGHTNEVNAIKWDPQGKFLASCSDDMTLKVWCMDKESH
VHDLQAHSKEIYTIKWSCTGPGTNNPNADLVLASASFDSTVRLWDVERGS
CLHXLXRHKEPVYSVAFSPDGKFLASGSFDKCVHIWSTVTGKLVHSYKGT
GGIFEVCWNSRGDKVGASASDGTVFVLDLRR
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mRNA from alignment at LSalAtl2s799:381305..384324+

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000011537-707384 ID=EMLSAT00000011537-707384|Name=EMLSAT00000011537|organism=Lepeophtheirus salmonis|type=mRNA|length=3020bp|location=Sequence derived from alignment at LSalAtl2s799:381305..384324+ (Lepeophtheirus salmonis)
ATGAGTTTTTCAACAGACGAAGTGAATTTTCTAGTGTATCGCTATCTGCA
AGAGGCTGGATTTTCTCATTCCGCCTTTGTGTTTGGTCAGGAGTCTCATG
TATCTCAGAGTAACATCAATGGGGCTCTGGTTCCTCCAAGAGCCCTCATC
TACATAATCCAGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAGGGGTTGAGTGTACAGCGACATGACTACTTGTTGTTTC
AGGGATTGTTGTATGTAGAAGCCGAGATTTCCACGGGCGAGGACGGGAGT
GAGCGTTTAATCGATGGATTGAGTCTCATTGACGCCGTGATGCCGGATGT
TGTTGCTTCTCGCAAGCAGCAGCAGCAGMCTGATCATAAGTCATCTCCCG
TGGAATCTGTGAAACTCGAGGATCGGCAACAAACTGCTTCAGCTCCTTCG
GACGATCATCCACAACAGCAACATCCCATGGACATTGATACGAATATTGA
AATTCCAGCTGAAAAAGCAAGTGTTCTCAAGGGGCATGACTCGGAAGTAT
TTATATGCGCTTGGAACCCTATGCAAGATTTATTGGCCTCTGGTTCTGGG
GACTCCACTGCTAGAATATGGCACATGGAAGATTCTCAACAAAGGGAAAT
AATTCTTAAGCATTGCATTCACCGAGGAGGACAAGAAGTAAGAAAAAGAC
ATGCATATATGTATCTACAAAGTACATTACATCTTCATCTTTGGATCTAG
GTACCTAGCAATAAGGATGTAACATCTCTGGATTGGAATAGTAGTGGGAG
TTTATTAGCCACAGGATCTTATGATGGGTTTGCTAGAATTTGGTCTACAA
CTGGAAAACTGGAAAAAACCTTAGGCCAACACAAGGGTCCTATATTTGCA
TTGAAATGGAATAAAAGTGGAAATTATATTCTAAGTGCAGGTTAGAAGGA
TTTCATCTGTAACCAGATAGACATGAACTCTTCTTTAATATTGACTTTGC
ATTTTAGGAGTGGATCGTACCACCATTATCTGGGATTCGCAAACTGGAAA
TCATAAGCAGCAATTTGCTTTTCATTCTGCTCCTGCGTTAGATGTTGACT
GGCAAACAGATGAGAGTTTTGCATCTTGTTCAACAGATAAATGCATTCAT
GTTTGTAAGTTGGGTGTAGAAAAACCTATTAAGTCCTTTTATGGACATAC
CAATGAGGTAACTAGATTCTTTTATTATTGTTGACTTCTTTGAAAAAAGT
ATTTATTATGACAGGTAAACGCAATCAAATGGGATCCTCAAGGTAAATTT
CTTGCCTCTTGTTCTGATGATATGACATTAAAGGTTTGGTGTATGGATAA
AGAAAGTCATGTACACGATTTACAAGCTCATTCCAAAGAAATTTATACCA
TTAAATGGTCATGTACAGGACCAGGAACAAATAATCCAAATGCAGATCTT
GTATTAGCATCAGCATCATTTGACAGTACCGTTCGTCTATGGGATGTGGA
AAGAGGATCATGTCTTCATKCCTTAAKAAGACATAAAGAACCCGTGTACT
CAGTTGCATTTTCCCCAGATGGAAAGTTTTTAGCCTCTGGCTCCTTTGAC
AAATGTGTACATATATGGTCTACTGTCACAGGCAAGTTAGTACATAGCTA
CAAAGGAACTGGAGGAATTTTCGAGGTGTGCTGGAATTCCCGTGGTGATA
AAGTCGGAGCTTCTGCTTCTGATGGCACTGTATTTGTTTTGGATCTTAGG
CGATGAAATAATTTTTAATCCTTCTATGTATATCGGTTATTCATTCCTAT
ACAACAATCCTCCTTCTTTAAACCTCTTGGAAAACAGTGTTTCCTTATAT
GGCATTTTAAGTGAGCATTAAGATGACTTCTTATGTATCTGTTATGCATA
TCCTTTATATCAATTTCATCTTTTTAAAAAAAAAGACTTATTTACAAAGA
TCTGTAATGTAGCAGTTAAGTTTCTGAACTATTAATTATCGGTAGGTGCA
AGTTATTATTGGATTTTGTGTGGATACATCTAATTTAAAATTCATTTCTC
TCCTCTTCCCCCCTCTCTCAATACCCTCAAAGATTCGACGAGTCTTTTTC
CCTAAGGACGTGAACATATATACCTATAAATATAATCAATTCTCTCTTTT
GGGGACTCCATTGTGTATTGTTATCTTATCTACTTTAAAAAAATGAATAA
ATACTTAAAGTTAGTCTTTCATATAAGCAATATTTTAAAGTAACTCTGCC
ATGCACCATAGAAATCTAGATAATTGGCATTAAGACGGCATTTTTACTTT
CCCCAAATTAGTCATTTTTTCGTTTATAATATATATGAGAGTAAAGTAGG
CCCCGAATATACTGTATTTAACATTTTTTAAATGTCGAACTACAAATTTA
AGCTGAGTTTAATCTTTTTTCACATTTTTTTAGTACTAATTTTTATTCTT
AAGAATGATTTTTAAATAAGAAATTCATTACTCACTACGGATATAGTTTA
ATATGTTTATTTCCAAAGAATATAAYAAGGATCTATGAKAAAAYGMGGGG
GGGGGGGGGNTGTAAAATGACGTCGAWATATTTTAATTTATRTAGAAATC
CATTCATGAGCAATCATTATGTTTAAAAAAATAATATATAAAATGGTCTT
ATATAGCTAAATCCAATGATTTATAATTATTTTAGTAAGTAAGTCCACCA
TAATGAACTTTATTTTCTTCCCTACATAATTTTTATCATAATGCATTATA
ATGAATTACTATCTAAGAAACATAACAACTATACATTTGAAATAATTAAT
TACAATATGGACTCTTCAGCATCAAATTTATTTCCCCGAATGAACCCATC
ATAAAGTGCCTTGAGTACGTATAGCATATACAGATGAAAACCTGTTATTG
GAATATACATATAAGTTATAGTAGATCTGCTTTATTAGGAAATTACAATA
TGTGTAACTTACATGATACG
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