EMLSAT00000012954, EMLSAT00000012954-708801 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000012954
Unique NameEMLSAT00000012954-708801
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s98supercontigLSalAtl2s98:1105047..1107802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000012954 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000012954EMLSAG00000012954-695720Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000058192EMLSAE00000058192-767120Lepeophtheirus salmonisexon
EMLSAE00000058193EMLSAE00000058193-767121Lepeophtheirus salmonisexon
EMLSAE00000058194EMLSAE00000058194-767122Lepeophtheirus salmonisexon
EMLSAE00000058195EMLSAE00000058195-767123Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto780425auto780425Lepeophtheirus salmonispolypeptide
EMLSAP00000012954EMLSAP00000012954Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000012954

>EMLSAP00000012954 ID=EMLSAP00000012954|Name=EMLSAP00000012954|organism=Lepeophtheirus salmonis|type=polypeptide|length=406bp
MPPGSPENIRKPFELRFVVSSSTMCRNDHQDILHFQENSDTSNHMSVDDD
DLENQDPSEIVKLEEDSFSHLVAPEDMLVVSKDEGVGEEIISSPHCSYEE
IVHRDDEMISTTGESIDENKILFILTQWTLTLQEVYQERIENENGFKSLP
GTKCVCSRTSSISKELQRLQNRLSEKRYDISINKQQISLYSTEEKELNRI
QTLIKAHVSIQISRPSDETVLEARRLVREIEEPEQYLSALTRNLISIVKD
LLPCGSGRHLTCTEGEHFPQEGTSGVMEQDEEEDMSLLVASMSTSPSKSS
XKXKQAVKTKXPPASPVTSSPSKKPRKVRSISFGGSDSTFESPSPFRVRP
FYKTNNVIDILEKNKKMAKTNGLYQFVLWREALKAEKDRVVHTPSSGKSH
NKRLSX
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mRNA from alignment at LSalAtl2s98:1105047..1107802+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000012954-708801 ID=EMLSAT00000012954-708801|Name=EMLSAT00000012954|organism=Lepeophtheirus salmonis|type=mRNA|length=2756bp|location=Sequence derived from alignment at LSalAtl2s98:1105047..1107802+ (Lepeophtheirus salmonis)
TGAGACTCTGACTGTGATGAATATTGGCGCGGCTTCAGCTCACATATTTC
CTTGTTATGATTTTATTACTCAGTGTTATACATGTAGTTGTTGGAGTAGG
GGGATCGGGCCTCCTTTGCGTCAGTGATTTTATTGTTTGTTTGTGAATTC
GTTCGTTTAGTTTTCAACGTTGAAAACGAAGGATTTTCGTTCGAGTGGTG
TATGAATCCAGTATGTTCCGTTCATTTAAACGTTTTTGCATTGTATATAT
GCGTAAGGAGAGAGTACTTTGAAGGACTCTCTCTTGGGAGTGACTCATGA
CCAGTTTGAAGGAGGTTTACGATTTAAAATTAGAGTGATATTACATTTAC
TATTAAAGGTGGAAGAAGGGAATTATACCACTTGAAAAGTTACTCTTCAA
GATGGAATTAAAGGGTGAAAATCATATTGGTTCTCTAATTATTAGTAGTT
ACGAATTGTCTTTCAAATATTTTATCTTTCTGATTGCGGGAAGAAAGTTG
ATTTTTGTTGTTGTTTGCCAATAGGCAACAACCTGTTGTTCCCTGCTCAT
TTCTNCTCTTCTATTCTTCATTCTAATAGAAATACTCAAATTTCACCCCT
CCTTTGGTTTTCTCTTCGCTTTTTCCCTTCTATATAACGATGAGTACAAT
TACCAAATTTGAATTGTTAATATTCATATTTCTTTGTCTTTTACCAAATG
ATTTTTTGTTCTTTTAGTACCTACTTTTTGAATGAGCCTTTCTTTCTGAT
TGCAACATAATTTAATCCAAGTTGTTCTGACCCTTGCAACTGAATTGTTT
TTTTATTTTTTTTTAATGATAAAGAACTTAAACGGCTTCTTTGGACCGAA
ATAAAGAAAGCTCCCTCCCTATGAATAATCTCTTGCTACACTGTGAAAGC
ATTTAACTTTTTACCTGACTATTATTGCTATTTTCAATTGCTATGATGTT
GAATTGTTTAATTAACAAAGTTATTAAGATGAGATGAATGACTCGTCTAT
AATTTTTTTTTTAATAGTTGAAATGATGATGCCACTATCTTTAACATTAT
TTTAAGTTGTTGTTTTTTCTTGTTATGATTAATGTTTCAATATAATGTAA
TTGTTTGCAGTATTGAAGACATTGAAGGAGGAGTCGTCACACATGCCTCC
GGGATCTCCCGAAAATATACGAAAGCCTTTTGAGTTGAGATTTGTTGTCA
GTAGCAGCACAATGTGTAGAAACGATCATCAAGACATCCTTCACTTTCAA
GAAAACTCAGATACTTCCAATCACATGTCAGTAGATGATGATGACCTCGA
AAATCAGGTACTTGTTCCTCTATTTCTATACCTAGAATTAAGAGTCTTGT
TTTCTTAAAATGGGCATTTTTATTTATGTTTTTTTTTTGTTAAAGTCAAA
AGTGTTTGAATTATTTAACTTTTAAAAATGATTCATTCTAATTAATTGTA
TGCTCAGATCACAGTATAAAACTTTTGTGATTAAAATATTATATATATAA
AAAAAATCTGATCAAAAGACAAAATTTTATTTAATAATGAGTGTTTAGTT
GGGTAGGATTCATGAAGTTGAGACGTCACAGTACTCTACTTCTATTTTCT
ATATACATGAGACTAAATTATCTTTTATCAATTTTTTTAAAGGATCCATC
TGAAATTGTGAAATTAGAAGAAGATTCCTTCTCCCATTTGGTTGCCCCTG
AAGATATGTTGGTTGTCTCGAAAGATGAAGGGGTCGGAGAGGAAATAATA
TCCTCCCCTCATTGTTCCTATGAGGAAATAGTTCATAGAGATGATGAAAT
GATATCCACCACCGGTGAGAGTATTGATGAAAACAAAATATTATTTATAC
TGACTCAGTGGACATTAACGCTTCAAGAAGTGTACCAAGAAAGAATTGAG
AATGAAAATGGTTTCAAAAGCTTACCTGGGACAAAGTGTGTTTGTAGCAG
AACTTCCTCTATCAGCAAAGAGCTGCAACGACTCCAAAATAGACTATCAG
AAAAAAGATATGATATCTCCATTAATAAGCAGCAGATATCTCTGTATTCC
ACTGAAGAGAAGGAGCTAAATAGAATTCAAACTCTCATTAAAGCTCATGT
CTCGATTCAAGTAAGTGGTGACCTATCTCTCAAGTCAAAAAATTTGGATT
TAATTATTTTATCTTCAGATTTCTCGTCCAAGTGACGAAACCGTCCTTGA
AGCACGTCGGTTAGTTCGTGAAATTGAAGAACCTGAACAGTACTTATCTG
CTTTGACACGCAATCTCATCAGTATAGTTAAAGATTTATTACCGTGTGGA
AGTGGTCGCCATTTGACATGCACTGAAGGTGAACATTTCCCTCAAGAGGG
CACTTCAGGTGTGATGGAACAGGATGAGGAAGAAGATATGAGTCTTTTGG
TCGCTTCTATGTCAACTTCTCCATCCAAATCTTCWARAAAGARAAAACAA
GCTGTTAAAACCAAAYCCCCYCCAGCCTCACCAGTAACATCCAGTCCGTC
TAAAAAGCCGAGAAAGGTTCGGTCAATCTCTTTTGGAGGTTCTGATTCGA
CATTTGAAAGTCCATCACCATTCAGAGTTCGTCCATTTTATAAGACTAAT
AATGTCATTGACATTTTGGAAAAAAATAAGAAAATGGCTAAAACAAACGG
GTTATATCAGTTTGTACTATGGCGAGAAGCTTTAAAAGCCGAGAAAGATC
GTGTTGTTCACACMCCCTCATCAGGCAAAAGCCACAACAAACGATTGAGC
NNNTGA
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