EMLSAP00000008556, EMLSAP00000008556 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000008556
Unique NameEMLSAP00000008556
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length1487
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007647RNA polymerase Rpb2, domain 5PFAMPF04567RNA_pol_Rpb2_5coord: 970..1002
e-value: 2.8E-4
score: 20.6
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 597..727
e-value: 3.2E-11
score: 42.8
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 1380..1484
e-value: 6.6E-19
score: 67.8
IPR023395Mitochondrial carrier domainGENE3D1.50.40.10coord: 5..239
e-value: 2.3E-51
score: 173.7
IPR023395Mitochondrial carrier domainSUPERFAMILY103506Mitochondrial carriercoord: 4..239
IPR009674RNA polymerase I, Rpa2 specificPFAMPF06883RNA_pol_Rpa2_4coord: 898..960
e-value: 1.4E-16
score: 60.0
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 313..768
e-value: 5.0E-27
score: 94.0
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6GENE3D2.40.270.10coord: 1079..1094
e-value: 1.5E-57
score: 194.1
coord: 1215..1356
e-value: 1.5E-57
score: 194.1
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6PFAMPF00562RNA_pol_Rpb2_6coord: 1009..1378
e-value: 2.3E-103
score: 345.8
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 787..851
e-value: 5.1E-24
score: 83.6
IPR018108Mitochondrial substrate/solute carrierPFAMPF00153Mito_carrcoord: 181..238
e-value: 5.2E-8
score: 32.3
coord: 86..173
e-value: 2.8E-12
score: 46.0
coord: 5..77
e-value: 1.9E-12
score: 46.6
IPR018108Mitochondrial substrate/solute carrierPROSITEPS50920SOLCARcoord: 5..78
score: 15.262
IPR018108Mitochondrial substrate/solute carrierPROSITEPS50920SOLCARcoord: 85..171
score: 15.391
IPR018108Mitochondrial substrate/solute carrierPROSITEPS50920SOLCARcoord: 180..265
score: 8.44
NoneNo IPR availableGENE3D3.90.1100.10coord: 311..461
e-value: 2.1E-49
score: 168.0
coord: 692..862
e-value: 2.1E-49
score: 168.0
coord: 1004..1078
e-value: 2.1E-49
score: 168.0
NoneNo IPR availablePANTHERPTHR20856:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 279..1487
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 300..517
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 579..1484
NoneNo IPR availableTMHMMTMhelixcoord: 228..250
NoneNo IPR availableTMHMMTMhelixcoord: 7..26
NoneNo IPR availableTMHMMTMhelixcoord: 50..72
IPR014724RNA polymerase Rpb2, OB-foldGENE3D2.40.50.150coord: 1095..1168
e-value: 8.5E-5
score: 22.2
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 279..1487
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 1225..1237

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
KAAS/KEGG2014-05-09
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000008556 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000008556EMLSAT00000008556-704403Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000008556 ID=EMLSAP00000008556|Name=EMLSAP00000008556|organism=Lepeophtheirus salmonis|type=polypeptide|length=1487bp
MADSVPLMVSLLSGGVAGTAVDIALFPLDTIKTRLQSPRGFYASGGFSRI
YAGLGPAALGSAPNAALFFLAYNAVKSTEILQKRHEAFRHAIAASAGEVT
ACLXRXPVEIIKQRRQAFQNVEPSLSSTSIVKKILHSKGFLGLYRGYFTT
VSREVPFSIIQFPLWEYFKHKYALNFNAEASPGVSASFGAVSGGIAAGLT
TPLDVAKTRIMLSDDPSTKRTLVVLRDIFVVNGFRGLFAVAYLLFIYLYY
PQLLQHFKCTWIPVFEKHKMKEKRFKKIVKNFDPTYPKKPSLKNLTSPEW
SIPSANPATEFLGTAHVESFNFATGPGLEMMIQDLEPVEFLVNDQRLSID
IVDAEFRPPEAPEGALGIRCPLVYPGEARQRGTTYKACAIIKVRITLNGV
LQPWILERSLGYLPIMVKSKICNLSNMSPKELVEKGEHPSEWGGYFVIGG
HERLIRMLISTRKNXPIAMCRPSWKNRGKHFSEYGVLLECSKPDLTVTKN
VLHFVTTGSAKYMFSFGRQLFFRARXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXPCVAPLGKTEGNIFQRSAKYMFSFGRQLFFVPV
IMILKCLTERTDADIYAHLIAGTSEDDHYYRSCLKEMLTEPHAEGLFSPE
QIRLYIGKSFKDKLKDALPEWTEDEDICKYLIKYSICIHAKDNEDKFQTI
VFMIKKLFALVQNRCVVEGVDSVMMQEYIILKKAKSENNFEVNALSISNA
INKMSPIAQSFESFLSTGNIPNASSLGLMQNSGISIMAENINRMRYMSHF
RAIHRGSFFQEMRTTEVRALLPDAWGFICPVHTPDGSPCGLLNHFTLNTE
VITHAPDASKVPEVLYDLGVVSVDEGIQGGNGKSVTPSYSVFLNGILMGY
VNGTSQTKEIADKLRILKVRKERGVPRVMEIVLIPYDDDSKLQGQYPGLF
LFTGPARMMRPVINLXADDVEFIGTFEQVFLNICIQPEEAYPGVTTHREL
RPTTFLSNLASLIPLPDFNQSPRNMYQCQMGKQTMATPIHTWHSNSETKI
YRLQTPTSPFFRPVHYDYIKLDEFPMGTNAIVAVISYTGYDMEDAMIINK
SSFERGFCSGSIYKAQFIDLKEISAGRKSYRNTDTCDLYFERNPNRDLSK
HLDADGLPYPGVPLFNGDPLYCYRSRIDDSYVLKKYEGNELAFVDSVKIL
SNDLGTGELTRVSICYRIPRNASVGDKFASRAGQKGICSRKWITEDLPWT
ESGIHPDIIFNPHGFPSRMTIAMMVECMAGKSGAAHGIVHDATPFTFSED
RNNDAIDFFGKQLESAGYNYYGTETMYSGTDGVEMKAEIFFGVIHYQRLR
HMVSDKFQVRSQGAIDQVTRQPIKGRRRGGGVRFGEMERDALLSHGSMFL
LQDRLFHGSDKTRVQICTRCGSLLSPRVSVSKKNTALGGAAVPGKXTCVI
CKKTDQVSELDLPYIFLHLVAQLAGVNIKVRLETTHS
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