EMLSAP00000008901, EMLSAP00000008901 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000008901
Unique NameEMLSAP00000008901
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length1963
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 1703..1720
score: 30.0
coord: 1624..1640
score: 35.29
coord: 1686..1702
score: 35.29
coord: 1721..1746
score: 30.0
coord: 1665..1686
score: 32.73
NoneNo IPR availableGENE3D2.40.40.20coord: 475..543
e-value: 1.6E-40
score: 136.4
coord: 384..411
e-value: 1.6E-40
score: 136.4
NoneNo IPR availableGENE3D3.30.1490.180coord: 412..473
e-value: 4.7E-28
score: 96.8
NoneNo IPR availablePANTHERPTHR19376:SF14DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNITcoord: 3..1546
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 3..1546
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 10..71
coord: 106..1501
IPR006592RNA polymerase, N-terminalSMARTSM00663RPOLA_Ncoord: 269..572
e-value: 3.1E-194
score: 661.2
IPR007066RNA polymerase Rpb1, domain 3PFAMPF04983RNA_pol_Rpb1_3coord: 547..715
e-value: 3.4E-44
score: 150.2
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 853..1449
e-value: 1.3E-100
score: 336.1
IPR000722RNA polymerase, alpha subunitPFAMPF00623RNA_pol_Rpb1_2coord: 379..542
e-value: 2.4E-68
score: 229.1
IPR007080RNA polymerase Rpb1, domain 1PFAMPF04997RNA_pol_Rpb1_1coord: 14..377
e-value: 1.1E-98
score: 330.4
IPR007075RNA polymerase Rpb1, domain 6PFAMPF04992RNA_pol_Rpb1_6coord: 919..1100
e-value: 5.0E-64
score: 215.3
IPR007073RNA polymerase Rpb1, domain 7PFAMPF04990RNA_pol_Rpb1_7coord: 1187..1321
e-value: 3.1E-52
score: 175.7
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPFAMPF05001RNA_pol_Rpb1_Rcoord: 1628..1638
e-value: 3.8
score: 7.7
coord: 1731..1744
e-value: 0.41
score: 10.7
coord: 1675..1688
e-value: 0.48
score: 10.5
coord: 1759..1772
e-value: 0.046
score: 13.7
coord: 1829..1842
e-value: 0.43
score: 10.7
coord: 1745..1758
e-value: 0.39
score: 10.8
coord: 1703..1716
e-value: 0.47
score: 10.6
coord: 1895..1908
e-value: 0.086
score: 12.8
coord: 1682..1695
e-value: 0.43
score: 10.7
coord: 1661..1674
e-value: 0.46
score: 10.6
coord: 1696..1709
e-value: 0.4
score: 10.8
coord: 1836..1849
e-value: 0.033
score: 14.1
coord: 1815..1827
e-value: 0.45
score: 10.6
coord: 1843..1856
e-value: 0.093
score: 12.7
coord: 1710..1723
e-value: 0.41
score: 10.7
coord: 1850..1863
e-value: 0.35
score: 10.9
coord: 1801..1814
e-value: 1.2
score: 9.2
coord: 1857..1870
e-value: 0.24
score: 11.5
coord: 1689..1702
e-value: 0.46
score: 10.6
coord: 1717..1730
e-value: 0.5
score: 10.5
coord: 1668..1681
e-value: 0.41
score: 10.7
coord: 1787..1799
e-value: 0.24
score: 11.5
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1765..1771
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1908..1914
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1681..1687
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1702..1708
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1870..1876
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1723..1729
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1751..1757
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1737..1743
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1730..1736
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1709..1715
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1807..1813
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1835..1841
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1667..1673
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1842..1848
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1856..1862
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1716..1722
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1688..1694
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1744..1750
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1660..1666
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1901..1907
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1814..1820
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1674..1680
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1821..1827
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1849..1855
IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticPROSITEPS00115RNA_POL_II_REPEATcoord: 1695..1701
IPR007083RNA polymerase Rpb1, domain 4PFAMPF05000RNA_pol_Rpb1_4coord: 743..846
e-value: 1.3E-36
score: 124.4

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
KAAS/KEGG2014-05-09
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000008901 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000008901EMLSAT00000008901-704748Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000008901 ID=EMLSAP00000008901|Name=EMLSAP00000008901|organism=Lepeophtheirus salmonis|type=polypeptide|length=1963bp
MSSIITGDSKAPVKLVKRIQFGILSPEEIRRMSVTEGGIRFPETYEGGRP
KLGGLMDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAGTMTECPGHFGHLELAKXVFHPGFLTKTIKVLRCVCFYCSKLL
VSPTHPKIKEIVMKSKGQPRKRMSHVYDLCKGKNICEGGDEMDTTNPAEG
SKSHGGCGRYQPTIRRVGLELTAEWKHKNEDSQEKKVPLIGEKVHEIFKN
ITDEECYILGMDPKFARPDWMIVSVXPVPPLCVRPAVVMFGSARNQDDLT
HKLADIIKANNELIRNEQAGAAAHIISENIRMLQFHVATFTDNDMPGLPK
AMQKSGRPLKAVKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ
VGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIIRDTGERI
DLRYHPKSSDLHLQCGYKVERHIRDGDLVVFNRQPSLHKMSMMGHKVKVL
PWSTFRMNLSDTSPYNADFDGDEMNLHVPQSMETRAEILNIHLTPRQIIT
PQAXKPVMGIVQDTLTAVRKMTKRDVFLSKEEMMTLVMFLPTWDGKLPIP
AIIKPKPLWTGKQLITLIIPGNTNCMRLHATHPDEETNGPYHWISPGDTR
VLIEHGELVMGILCKKSLGTAAGSLLHVSQLENGHEINGRFYGNIQTVVN
NWLLLEGHSIGIGDTIADPQTYQDIINTIRKAKDEVTEVIQKAHSDELEA
TPGNTLRQTFENKVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGS
DINVSQVIACVGQQNVEGKRIPFGFIKRTLPHFIKDDYGPESRGFVENSY
LAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVCYDG
TVRNAVGQLIQLIYGEDGLAGEXXEFQTLKTISLSNHTFEKKFKFDPTNE
RYVRKLFTDDVLREMVGSPEVVAEIEREWTQLCKDREALRQIFPTGKKNV
VLPCNLERMIWNAQKIFHINKRAPTDLSPLKVITGVRELVKRCVIVRGLD
KLSTQANDNATTLFQCLVRSTLCTKLVSETHRLSEEAFEWLLGEIESKFF
YAQSTPGEMVGAMAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI
INISKKPKAPSLTVFLTGSAARDAEKAKNVLCRLEHTTLKKVTANTAIYY
DPDPQNTFIAEDQEFVNVYYEMPDFDQSRISPWLLRIELDRKRMTDKKLT
MEQISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKDTDEEQADK
MEDDMFLRCIEANMLSDMTLQGLEAISKVYMHLPSTDDKKRMIITEQTGE
FKSIAEWLLETDGTALMRVLSERDVDSIRTTSNDICEIFSALGIEAVRKS
VEKEIFTVFNFYGIYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL
MRCSFEETVDVLMDAASHAEVDPMKGISENIILGQLPRMGTASFDLLLDA
EKCKYGIEIPMNAAGGMMGGPGLFFGSAASPSASMTPGMTPWAAGATPGY
VSAWXPPGSGMTPGGPGFSPSGQSDASGLSPRYSSWSPQPNSPGSPAMSP
YIASPGGMSPSLSPSSPTYAPMSPSLASPTSPGYSPTSGYNVTSPGYSPT
SAYNMSSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPGYSPTSPSYNAASPSXSPASPSYSPSSPQYSPKSPGH
SPQSPSYSPSSPKYSPTSPSYSPTSPNXSPSSPSYSPTSPNYSPTSPTYS
PSSPKYSPSSPKYSPTSPQYSPTSPTSPGYSPTSPQYSPTGNQXSPTSPT
YSPTSPTYSPSSPNYSTSSPTYMPSSPFSPAYSPSYAPTSPTYDVEEDSN
EDKNKKKKKKSSK
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